{"id":"https://openalex.org/W4396849244","doi":"https://doi.org/10.1093/bib/bbae162","title":"A comprehensive review of protein-centric predictors for biomolecular interactions: from proteins to nucleic acids and beyond","display_name":"A comprehensive review of protein-centric predictors for biomolecular interactions: from proteins to nucleic acids and beyond","publication_year":2024,"publication_date":"2024-03-27","ids":{"openalex":"https://openalex.org/W4396849244","doi":"https://doi.org/10.1093/bib/bbae162","pmid":"https://pubmed.ncbi.nlm.nih.gov/38739759"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae162","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae162","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae162/57554105/bbae162.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae162/57554105/bbae162.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112925021","display_name":"Pengzhen Jia","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pengzhen Jia","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , 932 Lushan Road(S), Changsha 410083 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 Lushan Road(S), Changsha 410083 , China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032947862","display_name":"Fuhao Zhang","orcid":"https://orcid.org/0000-0002-5339-0714"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fuhao Zhang","raw_affiliation_strings":["College of Information Engineering, Northwest A&F University , No. 3 Taicheng Road, Yangling, Shaanxi 712100 , China","School of Computer Science and Engineering, Central South University , 932 Lushan Road(S), Changsha 410083 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Northwest A&F University , No. 3 Taicheng Road, Yangling, Shaanxi 712100 , China","institution_ids":["https://openalex.org/I89652312"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 Lushan Road(S), Changsha 410083 , China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101352447","display_name":"Chaojin Wu","orcid":"https://orcid.org/0009-0009-0638-2437"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chaojin Wu","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , 932 Lushan Road(S), Changsha 410083 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 Lushan Road(S), Changsha 410083 , China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , 932 Lushan Road(S), Changsha 410083 , China"],"raw_orcid":"https://orcid.org/0000-0002-0188-1394","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 Lushan Road(S), Changsha 410083 , China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100719013"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.4989,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.81484445,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"25","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nucleic-acid","display_name":"Nucleic acid","score":0.8030821084976196},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5798677206039429},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41045257449150085},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3808983564376831},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33987703919410706},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25153279304504395},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2410660684108734}],"concepts":[{"id":"https://openalex.org/C24107716","wikidata":"https://www.wikidata.org/wiki/Q123619","display_name":"Nucleic acid","level":2,"score":0.8030821084976196},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5798677206039429},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41045257449150085},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3808983564376831},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33987703919410706},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25153279304504395},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2410660684108734}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae162","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae162","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae162/57554105/bbae162.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38739759","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38739759","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11089422","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11089422","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11089422/pdf/bbae162.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae162","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae162","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae162/57554105/bbae162.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8663586063","display_name":null,"funder_award_id":"62225209","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4396849244.pdf"},"referenced_works_count":241,"referenced_works":["https://openalex.org/W878378145","https://openalex.org/W1030883578","https://openalex.org/W1483099488","https://openalex.org/W1490161904","https://openalex.org/W1491553314","https://openalex.org/W1543773936","https://openalex.org/W1578097198","https://openalex.org/W1901968134","https://openalex.org/W1924414119","https://openalex.org/W1925336368","https://openalex.org/W1969156759","https://openalex.org/W1969842170","https://openalex.org/W1971722050","https://openalex.org/W1971894358","https://openalex.org/W1978987398","https://openalex.org/W1981095206","https://openalex.org/W1982267716","https://openalex.org/W1983142511","https://openalex.org/W1983259744","https://openalex.org/W1984580598","https://openalex.org/W1985919127","https://openalex.org/W1992176190","https://openalex.org/W1992326565","https://openalex.org/W2000036186","https://openalex.org/W2000093524","https://openalex.org/W2005604222","https://openalex.org/W2008708467","https://openalex.org/W2009664421","https://openalex.org/W2009672036","https://openalex.org/W2010468965","https://openalex.org/W2011340259","https://openalex.org/W2012834844","https://openalex.org/W2013616490","https://openalex.org/W2017230497","https://openalex.org/W2018661561","https://openalex.org/W2028042062","https://openalex.org/W2031198583","https://openalex.org/W2038670706","https://openalex.org/W2043638247","https://openalex.org/W2044523575","https://openalex.org/W2053257505","https://openalex.org/W2056169996","https://openalex.org/W2061103929","https://openalex.org/W2062296203","https://openalex.org/W2062606245","https://openalex.org/W2071286719","https://openalex.org/W2073229442","https://openalex.org/W2073798474","https://openalex.org/W2076052898","https://openalex.org/W2076911240","https://openalex.org/W2089716128","https://openalex.org/W2092123736","https://openalex.org/W2094148990","https://openalex.org/W2094173044","https://openalex.org/W2096986143","https://openalex.org/W2097694646","https://openalex.org/W2100124066","https://openalex.org/W2102245393","https://openalex.org/W2103148772","https://openalex.org/W2103485392","https://openalex.org/W2103505761","https://openalex.org/W2104785011","https://openalex.org/W2104812418","https://openalex.org/W2107340752","https://openalex.org/W2108134720","https://openalex.org/W2109444605","https://openalex.org/W2111249383","https://openalex.org/W2112832917","https://openalex.org/W2113424035","https://openalex.org/W2116139800","https://openalex.org/W2116498086","https://openalex.org/W2118713799","https://openalex.org/W2119493141","https://openalex.org/W2119583098","https://openalex.org/W2119948329","https://openalex.org/W2120744225","https://openalex.org/W2122137509","https://openalex.org/W2122304792","https://openalex.org/W2122863289","https://openalex.org/W2122901524","https://openalex.org/W2126103104","https://openalex.org/W2126592262","https://openalex.org/W2128533758","https://openalex.org/W2128569423","https://openalex.org/W2128607518","https://openalex.org/W2131474431","https://openalex.org/W2136637035","https://openalex.org/W2138248108","https://openalex.org/W2138769522","https://openalex.org/W2140538197","https://openalex.org/W2140883620","https://openalex.org/W2141627824","https://openalex.org/W2142529984","https://openalex.org/W2145023212","https://openalex.org/W2149997286","https://openalex.org/W2150119157","https://openalex.org/W2151412657","https://openalex.org/W2152116196","https://openalex.org/W2152705149","https://openalex.org/W2152856869","https://openalex.org/W2155194485","https://openalex.org/W2155320925","https://openalex.org/W2157807259","https://openalex.org/W2157892451","https://openalex.org/W2158508001","https://openalex.org/W2158714788","https://openalex.org/W2162392441","https://openalex.org/W2167884443","https://openalex.org/W2168055922","https://openalex.org/W2183050958","https://openalex.org/W2183923653","https://openalex.org/W2192578595","https://openalex.org/W2223549968","https://openalex.org/W2260093441","https://openalex.org/W2264362083","https://openalex.org/W2280888683","https://openalex.org/W2411478524","https://openalex.org/W2411557417","https://openalex.org/W2470414691","https://openalex.org/W2472103865","https://openalex.org/W2474188283","https://openalex.org/W2531919408","https://openalex.org/W2554651637","https://openalex.org/W2570083522","https://openalex.org/W2582176104","https://openalex.org/W2600989574","https://openalex.org/W2616246685","https://openalex.org/W2617750324","https://openalex.org/W2618265628","https://openalex.org/W2722005050","https://openalex.org/W2751476207","https://openalex.org/W2757108520","https://openalex.org/W2766234610","https://openalex.org/W2767891136","https://openalex.org/W2772865572","https://openalex.org/W2774453250","https://openalex.org/W2785269871","https://openalex.org/W2804549231","https://openalex.org/W2808043011","https://openalex.org/W2883467144","https://openalex.org/W2884055093","https://openalex.org/W2885015404","https://openalex.org/W2885583144","https://openalex.org/W2890911678","https://openalex.org/W2892720054","https://openalex.org/W2898210859","https://openalex.org/W2900569176","https://openalex.org/W2907063321","https://openalex.org/W2908450496","https://openalex.org/W2909686100","https://openalex.org/W2910201141","https://openalex.org/W2917858269","https://openalex.org/W2933350524","https://openalex.org/W2944679105","https://openalex.org/W2949301320","https://openalex.org/W2950389803","https://openalex.org/W2950742983","https://openalex.org/W2951937481","https://openalex.org/W2955690154","https://openalex.org/W2957436444","https://openalex.org/W2971405760","https://openalex.org/W2984633739","https://openalex.org/W2992752586","https://openalex.org/W2995420950","https://openalex.org/W2995450701","https://openalex.org/W2997708032","https://openalex.org/W2998259324","https://openalex.org/W3007077815","https://openalex.org/W3009202743","https://openalex.org/W3013976849","https://openalex.org/W3015074824","https://openalex.org/W3035792491","https://openalex.org/W3036648540","https://openalex.org/W3080498684","https://openalex.org/W3086768476","https://openalex.org/W3093053585","https://openalex.org/W3121281384","https://openalex.org/W3123012027","https://openalex.org/W3126876258","https://openalex.org/W3128687311","https://openalex.org/W3133178585","https://openalex.org/W3134084134","https://openalex.org/W3135883064","https://openalex.org/W3142241514","https://openalex.org/W3151148247","https://openalex.org/W3157397027","https://openalex.org/W3162519132","https://openalex.org/W3177500196","https://openalex.org/W3177828909","https://openalex.org/W3180564238","https://openalex.org/W3190553616","https://openalex.org/W3196030482","https://openalex.org/W3197696221","https://openalex.org/W3199468887","https://openalex.org/W3199607358","https://openalex.org/W3207643490","https://openalex.org/W3209369100","https://openalex.org/W3212342036","https://openalex.org/W3214870576","https://openalex.org/W4200540728","https://openalex.org/W4205171481","https://openalex.org/W4206247924","https://openalex.org/W4210262283","https://openalex.org/W4213041764","https://openalex.org/W4213072029","https://openalex.org/W4220788456","https://openalex.org/W4220821501","https://openalex.org/W4220824576","https://openalex.org/W4225833995","https://openalex.org/W4229031603","https://openalex.org/W4231059664","https://openalex.org/W4238372608","https://openalex.org/W4255594044","https://openalex.org/W4281294164","https://openalex.org/W4281557145","https://openalex.org/W4281750795","https://openalex.org/W4282931170","https://openalex.org/W4283011532","https://openalex.org/W4284680380","https://openalex.org/W4288690996","https://openalex.org/W4289764781","https://openalex.org/W4290712920","https://openalex.org/W4293374003","https://openalex.org/W4295136587","https://openalex.org/W4307180312","https://openalex.org/W4309506674","https://openalex.org/W4309728499","https://openalex.org/W4311494581","https://openalex.org/W4313557376","https://openalex.org/W4315620715","https://openalex.org/W4327559507","https://openalex.org/W4366085055","https://openalex.org/W4377968189","https://openalex.org/W4381486253","https://openalex.org/W4386703040","https://openalex.org/W6640102280","https://openalex.org/W6655254337","https://openalex.org/W6696048330","https://openalex.org/W6732748968","https://openalex.org/W6766917467","https://openalex.org/W6850230809"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W4391375266","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W1976181487","https://openalex.org/W1986764834"],"abstract_inverted_index":{"Proteins":[0],"interact":[1],"with":[2],"diverse":[3],"ligands":[4,96],"to":[5,28,72,146],"perform":[6],"a":[7,79,105],"large":[8],"number":[9],"of":[10,22,31,37,51,57,82,108,113],"biological":[11,42],"functions,":[12],"such":[13],"as":[14,159],"gene":[15],"expression":[16],"and":[17,34,46,94,154],"signal":[18],"transduction.":[19],"Accurate":[20],"identification":[21],"these":[23],"protein-ligand":[24,74,85],"interactions":[25],"is":[26,60,144],"crucial":[27],"the":[29,35,49,63,109],"understanding":[30],"molecular":[32],"mechanisms":[33],"development":[36,50],"new":[38,160],"drugs.":[39],"However,":[40],"traditional":[41],"experiments":[43],"are":[44,157],"time-consuming":[45],"expensive.":[47],"With":[48],"high-throughput":[52],"technologies,":[53],"an":[54],"increasing":[55],"amount":[56],"protein":[58,133],"data":[59],"available.":[61],"In":[62],"past":[64],"decades,":[65],"many":[66],"computational":[67],"methods":[68,129],"have":[69,102],"been":[70],"developed":[71],"predict":[73],"interactions.":[75,100],"Here,":[76],"we":[77],"review":[78],"comprehensive":[80,106],"set":[81],"over":[83],"160":[84],"interaction":[86],"predictors,":[87],"which":[88],"cover":[89],"protein-protein,":[90],"protein-nucleic":[91],"acid,":[92],"protein-peptide":[93],"protein-other":[95],"(nucleotide,":[97],"heme,":[98],"ion)":[99],"We":[101],"carried":[103],"out":[104],"analysis":[107],"above":[110],"four":[111],"types":[112],"predictors":[114],"from":[115],"several":[116],"significant":[117,140],"perspectives,":[118],"including":[119],"their":[120],"inputs,":[121],"feature":[122],"profiles,":[123],"models,":[124],"availability,":[125],"etc.":[126],"The":[127,139],"current":[128],"primarily":[130],"rely":[131],"on":[132],"sequences,":[134],"especially":[135],"utilizing":[136],"evolutionary":[137],"information.":[138],"improvement":[141],"in":[142],"predictions":[143],"attributed":[145],"deep":[147],"learning":[148],"methods.":[149],"Additionally,":[150],"sequence-based":[151],"pretrained":[152],"models":[153],"structure-based":[155],"approaches":[156],"emerging":[158],"trends.":[161]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":5}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
