{"id":"https://openalex.org/W4394014753","doi":"https://doi.org/10.1093/bib/bbae145","title":"A new paradigm for applying deep learning to protein\u2013ligand interaction prediction","display_name":"A new paradigm for applying deep learning to protein\u2013ligand interaction prediction","publication_year":2024,"publication_date":"2024-03-24","ids":{"openalex":"https://openalex.org/W4394014753","doi":"https://doi.org/10.1093/bib/bbae145","pmid":"https://pubmed.ncbi.nlm.nih.gov/38581420"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae145","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae145","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae145/57165950/bbae145.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae145/57165950/bbae145.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101519736","display_name":"Zechen Wang","orcid":"https://orcid.org/0000-0003-4554-133X"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zechen Wang","raw_affiliation_strings":["School of Physics, Shandong University , South Shanda Road, 250100 Shandong , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Physics, Shandong University , South Shanda Road, 250100 Shandong , China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100371324","display_name":"Sheng Wang","orcid":"https://orcid.org/0000-0003-4210-1670"},"institutions":[{"id":"https://openalex.org/I4210159344","display_name":"Viva Biotech (China)","ror":"https://ror.org/05p50vw42","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210159344"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sheng Wang","raw_affiliation_strings":["Shanghai Zelixir Biotech , Xiangke Road, 200030, Shanghai , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Zelixir Biotech , Xiangke Road, 200030, Shanghai , China","institution_ids":["https://openalex.org/I4210159344"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100356521","display_name":"Yangyang Li","orcid":"https://orcid.org/0000-0003-4469-0659"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yangyang Li","raw_affiliation_strings":["School of Physics, Shandong University , South Shanda Road, 250100 Shandong , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Physics, Shandong University , South Shanda Road, 250100 Shandong , China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008112425","display_name":"Jingjing Guo","orcid":"https://orcid.org/0000-0002-4632-4364"},"institutions":[{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Jingjing Guo","raw_affiliation_strings":["Centre in Artificial Intelligence Driven Drug Discovery , Faculty of Applied Sciences, , Rua de Lu\u00eds Gonzaga Gomes, Macao , China","Macao Polytechnic University , Faculty of Applied Sciences, , Rua de Lu\u00eds Gonzaga Gomes, Macao , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre in Artificial Intelligence Driven Drug Discovery , Faculty of Applied Sciences, , Rua de Lu\u00eds Gonzaga Gomes, Macao , China","institution_ids":[]},{"raw_affiliation_string":"Macao Polytechnic University , Faculty of Applied Sciences, , Rua de Lu\u00eds Gonzaga Gomes, Macao , China","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037823825","display_name":"Yanjie Wei","orcid":"https://orcid.org/0000-0002-4791-7540"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanjie Wei","raw_affiliation_strings":["Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences , Xueyuan Road 1068, Shenzhen, 518055 Guang Dong , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences , Xueyuan Road 1068, Shenzhen, 518055 Guang Dong , China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071286986","display_name":"Yuguang Mu","orcid":"https://orcid.org/0000-0002-2499-026X"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Yuguang Mu","raw_affiliation_strings":["School of Biological Sciences, Nanyang Technological University , Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, Nanyang Technological University , Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029472602","display_name":"Liangzhen Zheng","orcid":"https://orcid.org/0000-0003-1179-2106"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]},{"id":"https://openalex.org/I4210159344","display_name":"Viva Biotech (China)","ror":"https://ror.org/05p50vw42","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210159344"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Liangzhen Zheng","raw_affiliation_strings":["Shanghai Zelixir Biotech , Xiangke Road, 200030, Shanghai , China","Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences , Xueyuan Road 1068, Shenzhen, 518055 Guang Dong , China"],"raw_orcid":"https://orcid.org/0000-0003-1179-2106","affiliations":[{"raw_affiliation_string":"Shanghai Zelixir Biotech , Xiangke Road, 200030, Shanghai , China","institution_ids":["https://openalex.org/I4210159344"]},{"raw_affiliation_string":"Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences , Xueyuan Road 1068, Shenzhen, 518055 Guang Dong , China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007365792","display_name":"Weifeng Li","orcid":"https://orcid.org/0000-0002-0244-2908"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Weifeng Li","raw_affiliation_strings":["School of Physics, Shandong University , South Shanda Road, 250100 Shandong , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Physics, Shandong University , South Shanda Road, 250100 Shandong , China","institution_ids":["https://openalex.org/I154099455"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5007365792","https://openalex.org/A5029472602"],"corresponding_institution_ids":["https://openalex.org/I154099455","https://openalex.org/I19820366","https://openalex.org/I4210145761","https://openalex.org/I4210159344"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":7.7168,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.97976227,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"25","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6063504815101624},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5955469608306885},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5926536917686462},{"id":"https://openalex.org/keywords/paradigm-shift","display_name":"Paradigm shift","score":0.4400224983692169},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.4172332286834717},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3664425015449524},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.23157605528831482},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.137298583984375},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.07186442613601685},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.06703582406044006},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.06667405366897583},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.049452394247055054}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6063504815101624},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5955469608306885},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5926536917686462},{"id":"https://openalex.org/C43540301","wikidata":"https://www.wikidata.org/wiki/Q689971","display_name":"Paradigm shift","level":2,"score":0.4400224983692169},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.4172332286834717},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3664425015449524},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.23157605528831482},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.137298583984375},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.07186442613601685},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.06703582406044006},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.06667405366897583},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.049452394247055054}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbae145","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae145","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae145/57165950/bbae145.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38581420","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38581420","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10998640","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10998640","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10998640/pdf/bbae145.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:dr.ntu.edu.sg:10356/180048","is_oa":true,"landing_page_url":"https://hdl.handle.net/10356/180048","pdf_url":null,"source":{"id":"https://openalex.org/S4306402609","display_name":"DR-NTU (Nanyang Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172675005","host_organization_name":"Nanyang Technological University","host_organization_lineage":["https://openalex.org/I172675005"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae145","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae145","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae145/57165950/bbae145.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1597517502","display_name":null,"funder_award_id":"YDZX2022089","funder_id":"https://openalex.org/F4320338074","funder_display_name":"Government of Shandong Province"},{"id":"https://openalex.org/G2810253274","display_name":null,"funder_award_id":"Y2021101","funder_id":"https://openalex.org/F4320335892","funder_display_name":"Youth Innovation Promotion Association"},{"id":"https://openalex.org/G4009424769","display_name":null,"funder_award_id":"62272449","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6591655030","display_name":null,"funder_award_id":"2023YFA0915500","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G840821475","display_name":null,"funder_award_id":"ZR2020JQ04","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G8680350317","display_name":null,"funder_award_id":"RG97/22","funder_id":"https://openalex.org/F4320320751","funder_display_name":"Ministry of Education - Singapore"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320311026","display_name":"Shandong University","ror":"https://ror.org/0207yh398"},{"id":"https://openalex.org/F4320320751","display_name":"Ministry of Education - Singapore","ror":"https://ror.org/01kcva023"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322724","display_name":"Ministry of Education, India","ror":"https://ror.org/048xjjh50"},{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335892","display_name":"Youth Innovation Promotion Association","ror":null},{"id":"https://openalex.org/F4320338074","display_name":"Government of Shandong Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4394014753.pdf"},"referenced_works_count":84,"referenced_works":["https://openalex.org/W1653739410","https://openalex.org/W1854810044","https://openalex.org/W1950993160","https://openalex.org/W1968319881","https://openalex.org/W1968642986","https://openalex.org/W1975447903","https://openalex.org/W2000574754","https://openalex.org/W2000864931","https://openalex.org/W2023095911","https://openalex.org/W2030286884","https://openalex.org/W2038542598","https://openalex.org/W2053717624","https://openalex.org/W2072785961","https://openalex.org/W2074267393","https://openalex.org/W2092285329","https://openalex.org/W2094395502","https://openalex.org/W2134967712","https://openalex.org/W2148512505","https://openalex.org/W2180898434","https://openalex.org/W2202155158","https://openalex.org/W2266013672","https://openalex.org/W2325034207","https://openalex.org/W2559890467","https://openalex.org/W2611735159","https://openalex.org/W2781821160","https://openalex.org/W2784213390","https://openalex.org/W2790808809","https://openalex.org/W2795068716","https://openalex.org/W2800892557","https://openalex.org/W2898391595","https://openalex.org/W2902812092","https://openalex.org/W2921473648","https://openalex.org/W2943893168","https://openalex.org/W2951676304","https://openalex.org/W2971801381","https://openalex.org/W2972485984","https://openalex.org/W2974531988","https://openalex.org/W2982145277","https://openalex.org/W2985816842","https://openalex.org/W2985881898","https://openalex.org/W3012012790","https://openalex.org/W3026986333","https://openalex.org/W3030018498","https://openalex.org/W3081528324","https://openalex.org/W3094492244","https://openalex.org/W3098189759","https://openalex.org/W3157078379","https://openalex.org/W3162155458","https://openalex.org/W3168430821","https://openalex.org/W3177828909","https://openalex.org/W3203135092","https://openalex.org/W3206116522","https://openalex.org/W3208261418","https://openalex.org/W3209909976","https://openalex.org/W3216686093","https://openalex.org/W4206078729","https://openalex.org/W4210716706","https://openalex.org/W4280538744","https://openalex.org/W4282835253","https://openalex.org/W4283013935","https://openalex.org/W4289518623","https://openalex.org/W4295547865","https://openalex.org/W4302307901","https://openalex.org/W4311048978","https://openalex.org/W4313551409","https://openalex.org/W4315927151","https://openalex.org/W4362720950","https://openalex.org/W4366226601","https://openalex.org/W4366465619","https://openalex.org/W4380739447","https://openalex.org/W4383099422","https://openalex.org/W4383373262","https://openalex.org/W4386046621","https://openalex.org/W6640688408","https://openalex.org/W6674110019","https://openalex.org/W6730295966","https://openalex.org/W6735840763","https://openalex.org/W6749904121","https://openalex.org/W6759208606","https://openalex.org/W6796417832","https://openalex.org/W6796560204","https://openalex.org/W6803429348","https://openalex.org/W6846033198","https://openalex.org/W6849451960"],"related_works":["https://openalex.org/W2731899572","https://openalex.org/W3215138031","https://openalex.org/W4321369474","https://openalex.org/W3009238340","https://openalex.org/W4360585206","https://openalex.org/W4285208911","https://openalex.org/W3082895349","https://openalex.org/W4213079790","https://openalex.org/W2248239756","https://openalex.org/W4323565446"],"abstract_inverted_index":{"Protein-ligand":[0],"interaction":[1],"prediction":[2,98,194],"presents":[3,188],"a":[4,58,189],"significant":[5],"challenge":[6],"in":[7,47],"drug":[8],"design.":[9],"Numerous":[10],"machine":[11],"learning":[12,15],"and":[13,28,81,127,139,148,179],"deep":[14],"(DL)":[16],"models":[17,36],"have":[18],"been":[19],"developed":[20],"to":[21,199],"accurately":[22],"identify":[23],"docking":[24,79,118],"poses":[25,80],"of":[26,66,78,89,92,114,159,173,195,202],"ligands":[27],"active":[29],"compounds":[30],"against":[31],"specific":[32],"targets.":[33],"However,":[34],"current":[35],"often":[37],"suffer":[38],"from":[39],"inadequate":[40],"accuracy":[41],"or":[42],"lack":[43],"practical":[44],"physical":[45],"significance":[46],"their":[48],"scoring":[49],"systems.":[50],"In":[51],"this":[52,203],"research":[53],"paper,":[54],"we":[55,135,168],"introduce":[56],"IGModel,":[57],"novel":[59,190],"approach":[60],"that":[61,102],"utilizes":[62],"the":[63,73,82,86,90,96,103,112,123,170,200],"geometric":[64],"information":[65],"protein-ligand":[67,174,196],"complexes":[68],"as":[69],"input":[70],"for":[71,192],"predicting":[72],"root":[74],"mean":[75],"square":[76],"deviation":[77],"binding":[83,93],"strength":[84],"(pKd,":[85],"negative":[87],"value":[88],"logarithm":[91],"affinity)":[94],"within":[95],"same":[97],"framework.":[99],"This":[100,186],"ensures":[101],"output":[104],"scores":[105],"carry":[106],"intuitive":[107],"meaning.":[108],"We":[109],"extensively":[110],"evaluate":[111],"performance":[113,158],"IGModel":[115,160,178,206],"on":[116,144,161],"various":[117],"power":[119],"test":[120,146],"sets,":[121],"including":[122],"CASF-2016":[124],"benchmark,":[125],"PDBbind-CrossDocked-Core":[126],"DISCO":[128],"set,":[129],"consistently":[130],"achieving":[131],"state-of-the-art":[132],"accuracies.":[133],"Furthermore,":[134],"assess":[136],"IGModel's":[137],"generalizability":[138],"robustness":[140],"by":[141,154,177],"evaluating":[142],"it":[143],"unbiased":[145],"sets":[147,149,163],"containing":[150],"target":[151],"structures":[152],"generated":[153],"AlphaFold2.":[155],"The":[156,205],"exceptional":[157],"these":[162],"demonstrates":[164],"its":[165],"efficacy.":[166],"Additionally,":[167],"visualize":[169],"latent":[171],"space":[172],"interactions":[175],"encoded":[176],"conduct":[180],"interpretability":[181],"analysis,":[182],"providing":[183],"valuable":[184],"insights.":[185],"study":[187],"framework":[191],"DL-based":[193],"interactions,":[197],"contributing":[198],"advancement":[201],"field.":[204],"is":[207],"available":[208],"at":[209],"GitHub":[210],"repository":[211],"https://github.com/zchwang/IGModel.":[212]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":6}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
