{"id":"https://openalex.org/W4393905722","doi":"https://doi.org/10.1093/bib/bbae133","title":"ConvNeXt-MHC: improving MHC\u2013peptide affinity prediction by structure-derived degenerate coding and the ConvNeXt model","display_name":"ConvNeXt-MHC: improving MHC\u2013peptide affinity prediction by structure-derived degenerate coding and the ConvNeXt model","publication_year":2024,"publication_date":"2024-03-27","ids":{"openalex":"https://openalex.org/W4393905722","doi":"https://doi.org/10.1093/bib/bbae133","pmid":"https://pubmed.ncbi.nlm.nih.gov/38561979"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae133","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae133","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae133/57132323/bbae133.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae133/57132323/bbae133.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100350625","display_name":"Le Zhang","orcid":"https://orcid.org/0000-0002-3708-1727"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Le Zhang","raw_affiliation_strings":["College of Computer Science, Sichuan University , Chengdu 610065 , China"],"raw_orcid":"https://orcid.org/0000-0002-3708-1727","affiliations":[{"raw_affiliation_string":"College of Computer Science, Sichuan University , Chengdu 610065 , China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114056696","display_name":"Wenkai Song","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenkai Song","raw_affiliation_strings":["College of Computer Science, Sichuan University , Chengdu 610065 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science, Sichuan University , Chengdu 610065 , China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047617047","display_name":"Tinghao Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210097777","display_name":"China General Nuclear Power Corporation (China)","ror":"https://ror.org/00fpj7t66","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210097777"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tinghao Zhu","raw_affiliation_strings":["College of Computer Science, Sichuan University , Chengdu 610065 , China","Nuclear Power Institute of China , Chengdu 610213 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science, Sichuan University , Chengdu 610065 , China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Nuclear Power Institute of China , Chengdu 610213 , China","institution_ids":["https://openalex.org/I4210097777"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088854393","display_name":"Yang Liu","orcid":"https://orcid.org/0000-0002-2517-9436"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Liu","raw_affiliation_strings":["Center of Growth , Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, , No. 29 Wangjiang Road, Chengdu 610065 , China","Sichuan University , Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, , No. 29 Wangjiang Road, Chengdu 610065 , China","Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, No. 29 Wangjiang Road, Chengdu 610065, China"],"raw_orcid":"https://orcid.org/0000-0002-2517-9436","affiliations":[{"raw_affiliation_string":"Center of Growth , Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, , No. 29 Wangjiang Road, Chengdu 610065 , China","institution_ids":["https://openalex.org/I1327237609"]},{"raw_affiliation_string":"Sichuan University , Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, , No. 29 Wangjiang Road, Chengdu 610065 , China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, No. 29 Wangjiang Road, Chengdu 610065, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100344463","display_name":"Wei Chen","orcid":"https://orcid.org/0000-0002-6857-7696"},"institutions":[{"id":"https://openalex.org/I53411278","display_name":"Chengdu University of Traditional Chinese Medicine","ror":"https://ror.org/00pcrz470","country_code":"CN","type":"education","lineage":["https://openalex.org/I53411278"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Chen","raw_affiliation_strings":["Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine , Chengdu 611137 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine , Chengdu 611137 , China","institution_ids":["https://openalex.org/I53411278"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045938742","display_name":"Yang Cao","orcid":"https://orcid.org/0000-0002-1925-2123"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yang Cao","raw_affiliation_strings":["Center of Growth , Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, , No. 29 Wangjiang Road, Chengdu 610065 , China","Sichuan University , Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, , No. 29 Wangjiang Road, Chengdu 610065 , China","Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, No. 29 Wangjiang Road, Chengdu 610065, China"],"raw_orcid":"https://orcid.org/0000-0002-1925-2123","affiliations":[{"raw_affiliation_string":"Center of Growth , Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, , No. 29 Wangjiang Road, Chengdu 610065 , China","institution_ids":["https://openalex.org/I1327237609"]},{"raw_affiliation_string":"Sichuan University , Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, , No. 29 Wangjiang Road, Chengdu 610065 , China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, No. 29 Wangjiang Road, Chengdu 610065, China","institution_ids":["https://openalex.org/I24185976"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5045938742"],"corresponding_institution_ids":["https://openalex.org/I1327237609","https://openalex.org/I24185976"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":3.7853,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.93945173,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"25","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.6378324031829834},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.5533315539360046},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5348687767982483},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5109555125236511},{"id":"https://openalex.org/keywords/degenerate-energy-levels","display_name":"Degenerate energy levels","score":0.47094500064849854},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3421470522880554},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29749608039855957},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.21760010719299316},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20509636402130127},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1609698235988617},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.08361804485321045},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.06179925799369812}],"concepts":[{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.6378324031829834},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.5533315539360046},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5348687767982483},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5109555125236511},{"id":"https://openalex.org/C72319582","wikidata":"https://www.wikidata.org/wiki/Q584304","display_name":"Degenerate energy levels","level":2,"score":0.47094500064849854},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3421470522880554},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29749608039855957},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.21760010719299316},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20509636402130127},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1609698235988617},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.08361804485321045},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.06179925799369812},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae133","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae133","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae133/57132323/bbae133.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38561979","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38561979","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10985285","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10985285","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10985285/pdf/bbae133.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae133","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae133","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae133/57132323/bbae133.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2813597990","display_name":null,"funder_award_id":"62372316","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G310919419","display_name":null,"funder_award_id":"2020\u00a0M673221","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G5598991704","display_name":null,"funder_award_id":"81973243","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6419393087","display_name":null,"funder_award_id":"2020SCU12056","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G6851554750","display_name":null,"funder_award_id":"2018ZX10201002","funder_id":"https://openalex.org/F4320329860","funder_display_name":"National Science and Technology Major Project"},{"id":"https://openalex.org/G8291280291","display_name":null,"funder_award_id":"2021YFF1201200","funder_id":"https://openalex.org/F4320329860","funder_display_name":"National Science and Technology Major Project"}],"funders":[{"id":"https://openalex.org/F4320320698","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320322990","display_name":"Sichuan University","ror":"https://ror.org/011ashp19"},{"id":"https://openalex.org/F4320327639","display_name":"Centre Scientifique et Technique du B\u00e2timent","ror":"https://ror.org/02fsd1928"},{"id":"https://openalex.org/F4320329860","display_name":"National Science and Technology Major Project","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4393905722.pdf","grobid_xml":"https://content.openalex.org/works/W4393905722.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W1558421445","https://openalex.org/W1989179819","https://openalex.org/W1995134802","https://openalex.org/W2073621589","https://openalex.org/W2099500226","https://openalex.org/W2101772322","https://openalex.org/W2110694683","https://openalex.org/W2114970943","https://openalex.org/W2115280552","https://openalex.org/W2120399005","https://openalex.org/W2130479394","https://openalex.org/W2134182833","https://openalex.org/W2142739377","https://openalex.org/W2159767366","https://openalex.org/W2168688111","https://openalex.org/W2169628767","https://openalex.org/W2271914738","https://openalex.org/W2552513321","https://openalex.org/W2553949798","https://openalex.org/W2582438798","https://openalex.org/W2597129987","https://openalex.org/W2741742659","https://openalex.org/W2743893844","https://openalex.org/W2804097979","https://openalex.org/W2898389621","https://openalex.org/W2904711643","https://openalex.org/W2908403765","https://openalex.org/W2949949116","https://openalex.org/W2953065444","https://openalex.org/W2953333557","https://openalex.org/W2959124424","https://openalex.org/W2964632707","https://openalex.org/W2967717440","https://openalex.org/W2971621113","https://openalex.org/W2983176158","https://openalex.org/W2995389725","https://openalex.org/W3012349226","https://openalex.org/W3024570138","https://openalex.org/W3038053523","https://openalex.org/W3042452836","https://openalex.org/W3042910002","https://openalex.org/W3111171798","https://openalex.org/W3154502365","https://openalex.org/W3162675410","https://openalex.org/W3166730506","https://openalex.org/W3170417268","https://openalex.org/W3185043261","https://openalex.org/W3210196405","https://openalex.org/W4220655797","https://openalex.org/W4225726690","https://openalex.org/W4234797714","https://openalex.org/W4296195795","https://openalex.org/W4307972748","https://openalex.org/W4309026856","https://openalex.org/W4367550252","https://openalex.org/W4372256568","https://openalex.org/W4384934897","https://openalex.org/W4385210846","https://openalex.org/W4386463919","https://openalex.org/W4402776467","https://openalex.org/W6765069029","https://openalex.org/W6795100359"],"related_works":["https://openalex.org/W2353039109","https://openalex.org/W4315588385","https://openalex.org/W2061564118","https://openalex.org/W3124638673","https://openalex.org/W2066153363","https://openalex.org/W2900100504","https://openalex.org/W2146196898","https://openalex.org/W4318566977","https://openalex.org/W4254898719","https://openalex.org/W2891730302"],"abstract_inverted_index":{"Peptide":[0],"binding":[1,36,85],"to":[2,63,70,93],"major":[3],"histocompatibility":[4],"complex":[5],"(MHC)":[6],"proteins":[7],"plays":[8],"a":[9,30,60,80,89,147],"critical":[10],"role":[11],"in":[12,42,122,136,141],"T-cell":[13],"recognition":[14],"and":[15,98,102,158],"the":[16,19,43,51,66,72,107,137,142],"specificity":[17],"of":[18,35,45,53,74,124,139],"immune":[20],"response.":[21],"Experimental":[22],"validation":[23],"such":[24,49],"peptides":[25,37],"is":[26,38,59],"extremely":[27],"resource-intensive.":[28],"As":[29],"result,":[31],"accurate":[32],"computational":[33],"prediction":[34,68],"highly":[39],"important,":[40],"particularly":[41],"context":[44],"cancer":[46],"immunotherapy":[47],"applications,":[48],"as":[50],"identification":[52],"neoantigens.":[54],"In":[55],"recent":[56],"years,":[57],"there":[58],"significant":[61],"need":[62],"continually":[64],"improve":[65],"existing":[67],"methods":[69,97,105,121],"meet":[71],"demands":[73],"this":[75],"field.":[76],"We":[77,126,145],"developed":[78],"ConvNeXt-MHC,":[79],"method":[81],"for":[82],"predicting":[83],"MHC-I-peptide":[84],"affinity.":[86],"It":[87],"introduces":[88],"degenerate":[90],"encoding":[91],"approach":[92],"enhance":[94],"well-established":[95],"panspecific":[96],"integrates":[99],"transfer":[100],"learning":[101,104,110],"semi-supervised":[103],"into":[106],"cutting-edge":[108],"deep":[109],"framework":[111],"ConvNeXt.":[112],"Comprehensive":[113],"benchmark":[114],"results":[115],"demonstrate":[116],"that":[117,128],"ConvNeXt-MHC":[118,129],"outperforms":[119],"state-of-the-art":[120],"terms":[123],"accuracy.":[125],"expect":[127],"will":[130],"help":[131],"us":[132],"foster":[133],"new":[134],"discoveries":[135],"field":[138],"immunoinformatics":[140],"distant":[143],"future.":[144],"constructed":[146],"user-friendly":[148],"website":[149],"at":[150],"http://www.combio-lezhang.online/predict/,":[151],"where":[152],"users":[153],"can":[154],"access":[155],"our":[156],"data":[157],"application.":[159]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
