{"id":"https://openalex.org/W4394749617","doi":"https://doi.org/10.1093/bib/bbae127","title":"MS-BACL: enhancing metabolic stability prediction through bond graph augmentation and contrastive learning","display_name":"MS-BACL: enhancing metabolic stability prediction through bond graph augmentation and contrastive learning","publication_year":2024,"publication_date":"2024-03-27","ids":{"openalex":"https://openalex.org/W4394749617","doi":"https://doi.org/10.1093/bib/bbae127","pmid":"https://pubmed.ncbi.nlm.nih.gov/38555479"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae127","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae127","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae127/57109116/bbae127.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae127/57109116/bbae127.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100453453","display_name":"Tao Wang","orcid":"https://orcid.org/0000-0002-0202-0174"},"institutions":[{"id":"https://openalex.org/I146620803","display_name":"Wenzhou University","ror":"https://ror.org/020hxh324","country_code":"CN","type":"education","lineage":["https://openalex.org/I146620803"]},{"id":"https://openalex.org/I4400573270","display_name":"Wenzhou University of Technology","ror":"https://ror.org/03dd7qj98","country_code":null,"type":"education","lineage":["https://openalex.org/I4400573270"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tao Wang","raw_affiliation_strings":["School of Data Science and Artificial Intelligence, Wenzhou University of Technology , 325000, Wenzhou , China"],"affiliations":[{"raw_affiliation_string":"School of Data Science and Artificial Intelligence, Wenzhou University of Technology , 325000, Wenzhou , China","institution_ids":["https://openalex.org/I146620803","https://openalex.org/I4400573270"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100680995","display_name":"Zhen Li","orcid":"https://orcid.org/0000-0001-5093-4221"},"institutions":[{"id":"https://openalex.org/I37987034","display_name":"Guangzhou University","ror":"https://ror.org/05ar8rn06","country_code":"CN","type":"education","lineage":["https://openalex.org/I37987034"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen Li","raw_affiliation_strings":["Institute of Computational Science and Technology, Guangzhou University , 510006, Guangzhou , China"],"affiliations":[{"raw_affiliation_string":"Institute of Computational Science and Technology, Guangzhou University , 510006, Guangzhou , China","institution_ids":["https://openalex.org/I37987034"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004683765","display_name":"Linlin Zhuo","orcid":null},"institutions":[{"id":"https://openalex.org/I146620803","display_name":"Wenzhou University","ror":"https://ror.org/020hxh324","country_code":"CN","type":"education","lineage":["https://openalex.org/I146620803"]},{"id":"https://openalex.org/I4400573270","display_name":"Wenzhou University of Technology","ror":"https://ror.org/03dd7qj98","country_code":null,"type":"education","lineage":["https://openalex.org/I4400573270"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Linlin Zhuo","raw_affiliation_strings":["School of Data Science and Artificial Intelligence, Wenzhou University of Technology , 325000, Wenzhou , China"],"affiliations":[{"raw_affiliation_string":"School of Data Science and Artificial Intelligence, Wenzhou University of Technology , 325000, Wenzhou , China","institution_ids":["https://openalex.org/I146620803","https://openalex.org/I4400573270"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100405151","display_name":"Yifan Chen","orcid":"https://orcid.org/0000-0003-1353-7192"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yifan Chen","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University , 410012, Changsha , China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University , 410012, Changsha , China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044283271","display_name":"Xiangzheng Fu","orcid":"https://orcid.org/0000-0001-6840-2573"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangzheng Fu","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University , 410012, Changsha , China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University , 410012, Changsha , China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017426085","display_name":"Quan Zou","orcid":"https://orcid.org/0000-0001-6406-1142"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Quan Zou","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China , 611730, Chengdu , China"],"affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China , 611730, Chengdu , China","institution_ids":["https://openalex.org/I150229711"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100453453"],"corresponding_institution_ids":["https://openalex.org/I146620803","https://openalex.org/I4400573270"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":8.4646,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.98151496,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"25","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.972000002861023,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6707961559295654},{"id":"https://openalex.org/keywords/bond-graph","display_name":"Bond graph","score":0.6536877751350403},{"id":"https://openalex.org/keywords/molecular-graph","display_name":"Molecular graph","score":0.6121516227722168},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.6109366416931152},{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.5491558909416199},{"id":"https://openalex.org/keywords/metabolic-stability","display_name":"Metabolic stability","score":0.4854746162891388},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.4676133394241333},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.45236653089523315},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37950390577316284},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35473188757896423},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3316539525985718},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.31403329968452454},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11922621726989746}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6707961559295654},{"id":"https://openalex.org/C187593909","wikidata":"https://www.wikidata.org/wiki/Q838024","display_name":"Bond graph","level":2,"score":0.6536877751350403},{"id":"https://openalex.org/C2780022179","wikidata":"https://www.wikidata.org/wiki/Q1986794","display_name":"Molecular graph","level":3,"score":0.6121516227722168},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.6109366416931152},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.5491558909416199},{"id":"https://openalex.org/C2991874392","wikidata":"https://www.wikidata.org/wiki/Q1124842","display_name":"Metabolic stability","level":3,"score":0.4854746162891388},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.4676133394241333},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.45236653089523315},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37950390577316284},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35473188757896423},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3316539525985718},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.31403329968452454},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11922621726989746},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C202751555","wikidata":"https://www.wikidata.org/wiki/Q221681","display_name":"In vitro","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae127","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae127","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae127/57109116/bbae127.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38555479","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38555479","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10981768","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10981768","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10981768/pdf/bbae127.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae127","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae127","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae127/57109116/bbae127.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7099999785423279,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G6945085629","display_name":null,"funder_award_id":"62002111","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7437023825","display_name":null,"funder_award_id":"62302339","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4394749617.pdf","grobid_xml":"https://content.openalex.org/works/W4394749617.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1968235034","https://openalex.org/W2069457036","https://openalex.org/W2093882311","https://openalex.org/W2113656727","https://openalex.org/W2144465276","https://openalex.org/W2156445661","https://openalex.org/W2179414561","https://openalex.org/W2794474109","https://openalex.org/W2900090807","https://openalex.org/W2910665987","https://openalex.org/W2949066401","https://openalex.org/W2968734407","https://openalex.org/W2981132553","https://openalex.org/W3022708367","https://openalex.org/W3023096250","https://openalex.org/W3031018767","https://openalex.org/W3110901318","https://openalex.org/W3195569805","https://openalex.org/W3199903253","https://openalex.org/W3202939305","https://openalex.org/W3209142261","https://openalex.org/W4293581802","https://openalex.org/W4294286981","https://openalex.org/W4385774226","https://openalex.org/W6754929296","https://openalex.org/W6770717842","https://openalex.org/W6777434492","https://openalex.org/W6778232124"],"related_works":["https://openalex.org/W3009669764","https://openalex.org/W1958094387","https://openalex.org/W2032170356","https://openalex.org/W2614520266","https://openalex.org/W2371731813","https://openalex.org/W2358330211","https://openalex.org/W2628002430","https://openalex.org/W2013842271","https://openalex.org/W2808877228","https://openalex.org/W4394749617"],"abstract_inverted_index":{"The":[0],"code":[1],"and":[2],"data":[3],"are":[4],"publicly":[5],"available":[6],"at":[7],"https://github.com/taowang11/MS.":[8]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":8}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
