{"id":"https://openalex.org/W4394766978","doi":"https://doi.org/10.1093/bib/bbae120","title":"Benchmarking digital PCR partition classification methods with empirical and simulated duplex data","display_name":"Benchmarking digital PCR partition classification methods with empirical and simulated duplex data","publication_year":2024,"publication_date":"2024-03-27","ids":{"openalex":"https://openalex.org/W4394766978","doi":"https://doi.org/10.1093/bib/bbae120","pmid":"https://pubmed.ncbi.nlm.nih.gov/38555473"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae120","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae120","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbae120","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100394238","display_name":"Yao Chen","orcid":"https://orcid.org/0000-0001-8172-3996"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]},{"id":"https://openalex.org/I2802330208","display_name":"Statistics Belgium","ror":"https://ror.org/0246a9012","country_code":"BE","type":"government","lineage":["https://openalex.org/I2802330208","https://openalex.org/I4210095879"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I878454856","display_name":"Hasselt University","ror":"https://ror.org/04nbhqj75","country_code":"BE","type":"education","lineage":["https://openalex.org/I878454856"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Yao Chen","raw_affiliation_strings":["Department of Applied Mathematics , Computer Science and Statistics, , Belgium","Department of Morphology , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","Ghent University , Computer Science and Statistics, , Belgium","Ghent University , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","Ghent University Digital PCR Consortium, Ghent University , Belgium","Department of Applied Mathematics, Computer Science and Statistics at Ghent University,","Department of Applied Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium","Professor of Biostatistics at Hasselt University, Guest Professor at the Faculty of Sciences at Ghent University and Honorary Professor at the"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics , Computer Science and Statistics, , Belgium","institution_ids":["https://openalex.org/I2802330208"]},{"raw_affiliation_string":"Department of Morphology , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","institution_ids":[]},{"raw_affiliation_string":"Ghent University , Computer Science and Statistics, , Belgium","institution_ids":["https://openalex.org/I2802330208","https://openalex.org/I32597200"]},{"raw_affiliation_string":"Ghent University , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Ghent University Digital PCR Consortium, Ghent University , Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics at Ghent University,","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Professor of Biostatistics at Hasselt University, Guest Professor at the Faculty of Sciences at Ghent University and Honorary Professor at the","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I878454856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006530143","display_name":"Ward De Spiegelaere","orcid":"https://orcid.org/0000-0003-2097-8439"},"institutions":[{"id":"https://openalex.org/I204824540","display_name":"University of Wollongong","ror":"https://ror.org/00jtmb277","country_code":"AU","type":"education","lineage":["https://openalex.org/I204824540"]},{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I878454856","display_name":"Hasselt University","ror":"https://ror.org/04nbhqj75","country_code":"BE","type":"education","lineage":["https://openalex.org/I878454856"]}],"countries":["AU","BE"],"is_corresponding":false,"raw_author_name":"Ward De Spiegelaere","raw_affiliation_strings":["Department of Morphology , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","Ghent University , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","Ghent University Digital PCR Consortium, Ghent University , Belgium","Department of Applied Mathematics, Computer Science and Statistics at Ghent University,","Department of Applied Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium","Professor of Biostatistics at Hasselt University, Guest Professor at the Faculty of Sciences at Ghent University and Honorary Professor at the","University of Wollongong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Morphology , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","institution_ids":[]},{"raw_affiliation_string":"Ghent University , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Ghent University Digital PCR Consortium, Ghent University , Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics at Ghent University,","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Professor of Biostatistics at Hasselt University, Guest Professor at the Faculty of Sciences at Ghent University and Honorary Professor at the","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I878454856"]},{"raw_affiliation_string":"University of Wollongong","institution_ids":["https://openalex.org/I204824540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008147896","display_name":"Wim Trypsteen","orcid":"https://orcid.org/0000-0001-9066-4932"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I878454856","display_name":"Hasselt University","ror":"https://ror.org/04nbhqj75","country_code":"BE","type":"education","lineage":["https://openalex.org/I878454856"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Wim Trypsteen","raw_affiliation_strings":["Department of Internal Medicine, Ghent University and University Hospital , Belgium","Department of Morphology , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","Ghent University , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","Ghent University Digital PCR Consortium, Ghent University , Belgium","Department of Applied Mathematics, Computer Science and Statistics at Ghent University,","Department of Applied Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium","Professor of Biostatistics at Hasselt University, Guest Professor at the Faculty of Sciences at Ghent University and Honorary Professor at the"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine, Ghent University and University Hospital , Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Department of Morphology , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","institution_ids":[]},{"raw_affiliation_string":"Ghent University , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Ghent University Digital PCR Consortium, Ghent University , Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics at Ghent University,","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Professor of Biostatistics at Hasselt University, Guest Professor at the Faculty of Sciences at Ghent University and Honorary Professor at the","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I878454856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050561183","display_name":"David Gleerup","orcid":"https://orcid.org/0000-0003-0409-0763"},"institutions":[{"id":"https://openalex.org/I204824540","display_name":"University of Wollongong","ror":"https://ror.org/00jtmb277","country_code":"AU","type":"education","lineage":["https://openalex.org/I204824540"]},{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I878454856","display_name":"Hasselt University","ror":"https://ror.org/04nbhqj75","country_code":"BE","type":"education","lineage":["https://openalex.org/I878454856"]}],"countries":["AU","BE"],"is_corresponding":false,"raw_author_name":"David Gleerup","raw_affiliation_strings":["Department of Morphology , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","Ghent University , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","Ghent University Digital PCR Consortium, Ghent University , Belgium","Department of Applied Mathematics, Computer Science and Statistics at Ghent University,","Department of Applied Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium","Professor of Biostatistics at Hasselt University, Guest Professor at the Faculty of Sciences at Ghent University and Honorary Professor at the","University of Wollongong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Morphology , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","institution_ids":[]},{"raw_affiliation_string":"Ghent University , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Ghent University Digital PCR Consortium, Ghent University , Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics at Ghent University,","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Professor of Biostatistics at Hasselt University, Guest Professor at the Faculty of Sciences at Ghent University and Honorary Professor at the","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I878454856"]},{"raw_affiliation_string":"University of Wollongong","institution_ids":["https://openalex.org/I204824540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086580140","display_name":"Jo Vandesompele","orcid":"https://orcid.org/0000-0001-6274-0184"},"institutions":[{"id":"https://openalex.org/I204824540","display_name":"University of Wollongong","ror":"https://ror.org/00jtmb277","country_code":"AU","type":"education","lineage":["https://openalex.org/I204824540"]},{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210118715","display_name":"Cancer Research Institute Ghent","ror":"https://ror.org/02afm7029","country_code":"BE","type":"facility","lineage":["https://openalex.org/I4210118715"]},{"id":"https://openalex.org/I878454856","display_name":"Hasselt University","ror":"https://ror.org/04nbhqj75","country_code":"BE","type":"education","lineage":["https://openalex.org/I878454856"]}],"countries":["AU","BE"],"is_corresponding":false,"raw_author_name":"Jo Vandesompele","raw_affiliation_strings":["Cancer Research Institute Ghent (CRIG), Ghent University and University Hospital , Belgium","Department of Biomolecular Medicine, Ghent University and University Hospital , Belgium","Ghent University Digital PCR Consortium, Ghent University , Belgium","Pxlence , Belgium","Department of Applied Mathematics, Computer Science and Statistics at Ghent University,","Department of Applied Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium","Professor of Biostatistics at Hasselt University, Guest Professor at the Faculty of Sciences at Ghent University and Honorary Professor at the","University of Wollongong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research Institute Ghent (CRIG), Ghent University and University Hospital , Belgium","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I4210118715"]},{"raw_affiliation_string":"Department of Biomolecular Medicine, Ghent University and University Hospital , Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Ghent University Digital PCR Consortium, Ghent University , Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Pxlence , Belgium","institution_ids":[]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics at Ghent University,","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Professor of Biostatistics at Hasselt University, Guest Professor at the Faculty of Sciences at Ghent University and Honorary Professor at the","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I878454856"]},{"raw_affiliation_string":"University of Wollongong","institution_ids":["https://openalex.org/I204824540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090509443","display_name":"Antoon Lievens","orcid":null},"institutions":[{"id":"https://openalex.org/I204824540","display_name":"University of Wollongong","ror":"https://ror.org/00jtmb277","country_code":"AU","type":"education","lineage":["https://openalex.org/I204824540"]},{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I878454856","display_name":"Hasselt University","ror":"https://ror.org/04nbhqj75","country_code":"BE","type":"education","lineage":["https://openalex.org/I878454856"]}],"countries":["AU","BE"],"is_corresponding":false,"raw_author_name":"Antoon Lievens","raw_affiliation_strings":["Ghent University Digital PCR Consortium, Ghent University , Belgium","Department of Applied Mathematics, Computer Science and Statistics at Ghent University,","Department of Applied Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium","Professor of Biostatistics at Hasselt University, Guest Professor at the Faculty of Sciences at Ghent University and Honorary Professor at the","University of Wollongong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ghent University Digital PCR Consortium, Ghent University , Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics at Ghent University,","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Professor of Biostatistics at Hasselt University, Guest Professor at the Faculty of Sciences at Ghent University and Honorary Professor at the","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I878454856"]},{"raw_affiliation_string":"University of Wollongong","institution_ids":["https://openalex.org/I204824540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069979334","display_name":"Matthijs Vynck","orcid":"https://orcid.org/0000-0001-9875-385X"},"institutions":[{"id":"https://openalex.org/I204824540","display_name":"University of Wollongong","ror":"https://ror.org/00jtmb277","country_code":"AU","type":"education","lineage":["https://openalex.org/I204824540"]},{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I878454856","display_name":"Hasselt University","ror":"https://ror.org/04nbhqj75","country_code":"BE","type":"education","lineage":["https://openalex.org/I878454856"]}],"countries":["AU","BE"],"is_corresponding":false,"raw_author_name":"Matthijs Vynck","raw_affiliation_strings":["Department of Morphology , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","Ghent University , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","Ghent University Digital PCR Consortium, Ghent University , Belgium","Department of Applied Mathematics, Computer Science and Statistics at Ghent University,","Department of Applied Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium","Professor of Biostatistics at Hasselt University, Guest Professor at the Faculty of Sciences at Ghent University and Honorary Professor at the","University of Wollongong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Morphology , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","institution_ids":[]},{"raw_affiliation_string":"Ghent University , Imaging, Orthopedics, Rehabilitation and Nutrition, , Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Ghent University Digital PCR Consortium, Ghent University , Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics at Ghent University,","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Professor of Biostatistics at Hasselt University, Guest Professor at the Faculty of Sciences at Ghent University and Honorary Professor at the","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I878454856"]},{"raw_affiliation_string":"University of Wollongong","institution_ids":["https://openalex.org/I204824540"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091491978","display_name":"Olivier Thas","orcid":"https://orcid.org/0000-0001-6442-4089"},"institutions":[{"id":"https://openalex.org/I1324605556","display_name":"Australian Bureau of Statistics","ror":"https://ror.org/00ve6e186","country_code":"AU","type":"government","lineage":["https://openalex.org/I1280568170","https://openalex.org/I1324605556","https://openalex.org/I2801453606"]},{"id":"https://openalex.org/I204824540","display_name":"University of Wollongong","ror":"https://ror.org/00jtmb277","country_code":"AU","type":"education","lineage":["https://openalex.org/I204824540"]},{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]},{"id":"https://openalex.org/I2802330208","display_name":"Statistics Belgium","ror":"https://ror.org/0246a9012","country_code":"BE","type":"government","lineage":["https://openalex.org/I2802330208","https://openalex.org/I4210095879"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I878454856","display_name":"Hasselt University","ror":"https://ror.org/04nbhqj75","country_code":"BE","type":"education","lineage":["https://openalex.org/I878454856"]}],"countries":["AU","BE"],"is_corresponding":true,"raw_author_name":"Olivier Thas","raw_affiliation_strings":["Department of Applied Mathematics , Computer Science and Statistics, , Belgium","Ghent University , Computer Science and Statistics, , Belgium","Ghent University Digital PCR Consortium, Ghent University , Belgium","Hasselt University , Data Science Institute, , Belgium","I-BioStat , Data Science Institute, , Belgium","National Institute for Applied Statistics Research Australia (NIASRA), University of Wollongong , Australia","Department of Applied Mathematics, Computer Science and Statistics at Ghent University,","Department of Applied Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium","Professor of Biostatistics at Hasselt University, Guest Professor at the Faculty of Sciences at Ghent University and Honorary Professor at the"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics , Computer Science and Statistics, , Belgium","institution_ids":["https://openalex.org/I2802330208"]},{"raw_affiliation_string":"Ghent University , Computer Science and Statistics, , Belgium","institution_ids":["https://openalex.org/I2802330208","https://openalex.org/I32597200"]},{"raw_affiliation_string":"Ghent University Digital PCR Consortium, Ghent University , Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Hasselt University , Data Science Institute, , Belgium","institution_ids":["https://openalex.org/I878454856"]},{"raw_affiliation_string":"I-BioStat , Data Science Institute, , Belgium","institution_ids":["https://openalex.org/I2802330208"]},{"raw_affiliation_string":"National Institute for Applied Statistics Research Australia (NIASRA), University of Wollongong , Australia","institution_ids":["https://openalex.org/I1324605556","https://openalex.org/I204824540"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics at Ghent University,","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Professor of Biostatistics at Hasselt University, Guest Professor at the Faculty of Sciences at Ghent University and Honorary Professor at the","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I878454856"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5091491978"],"corresponding_institution_ids":["https://openalex.org/I1324605556","https://openalex.org/I204824540","https://openalex.org/I2801227569","https://openalex.org/I2802330208","https://openalex.org/I32597200","https://openalex.org/I878454856"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.1309,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.75714979,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"25","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11901","display_name":"Bayesian Methods and Mixture Models","score":0.9700000286102295,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9605000019073486,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7646603584289551},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7469490766525269},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5345804691314697},{"id":"https://openalex.org/keywords/estimator","display_name":"Estimator","score":0.4713411033153534},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3757002055644989},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3703354597091675},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18085184693336487},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.09911686182022095}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7646603584289551},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7469490766525269},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5345804691314697},{"id":"https://openalex.org/C185429906","wikidata":"https://www.wikidata.org/wiki/Q1130160","display_name":"Estimator","level":2,"score":0.4713411033153534},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3757002055644989},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3703354597091675},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18085184693336487},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.09911686182022095}],"mesh":[{"descriptor_ui":"D000073890","descriptor_name":"Liquid Biopsy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073890","descriptor_name":"Liquid Biopsy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073890","descriptor_name":"Liquid Biopsy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073890","descriptor_name":"Liquid Biopsy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073890","descriptor_name":"Liquid Biopsy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbae120","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae120","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38555473","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38555473","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:archive.ugent.be:01HVGJ2RWPSRPCGSC2RVFK4WYA","is_oa":true,"landing_page_url":"https://biblio.ugent.be/publication/01HVGJ2RWPSRPCGSC2RVFK4WYA","pdf_url":"https://biblio.ugent.be/publication/01HVGJ2RWPSRPCGSC2RVFK4WYA/file/01HVGJ4RAGF1SN1DJ1P0KEJRA3.pdf","source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1477-4054","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:documentserver.uhasselt.be:1942/42855","is_oa":true,"landing_page_url":"http://hdl.handle.net/1942/42855","pdf_url":"https://documentserver.uhasselt.be//bitstream/1942/42855/1/Benchmarking%20digital%20PCR%20partition%20classification%20methods%20with%20empirical%20and%20simulated%20duplex%20data.pdf","source":{"id":"https://openalex.org/S4306401926","display_name":"Document Server@UHasselt (UHasselt)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I878454856","host_organization_name":"Hasselt University","host_organization_lineage":["https://openalex.org/I878454856"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10981767","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10981767","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae120","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae120","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","score":0.550000011920929,"id":"https://metadata.un.org/sdg/12"}],"awards":[{"id":"https://openalex.org/G2625359547","display_name":null,"funder_award_id":"01IO0420","funder_id":"https://openalex.org/F4320322603","funder_display_name":"Universiteit Gent"},{"id":"https://openalex.org/G7156510455","display_name":null,"funder_award_id":"01IO0420","funder_id":"https://openalex.org/F4320335227","funder_display_name":"Bijzonder Onderzoeksfonds UGent"}],"funders":[{"id":"https://openalex.org/F4320322603","display_name":"Universiteit Gent","ror":"https://ror.org/00cv9y106"},{"id":"https://openalex.org/F4320335227","display_name":"Bijzonder Onderzoeksfonds UGent","ror":"https://ror.org/00cv9y106"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1495929194","https://openalex.org/W1540596182","https://openalex.org/W1818937361","https://openalex.org/W1982914322","https://openalex.org/W1991645955","https://openalex.org/W1993835819","https://openalex.org/W2009474665","https://openalex.org/W2064543601","https://openalex.org/W2069323107","https://openalex.org/W2071356118","https://openalex.org/W2087932775","https://openalex.org/W2099066165","https://openalex.org/W2101038583","https://openalex.org/W2106536306","https://openalex.org/W2137170837","https://openalex.org/W2150593711","https://openalex.org/W2159132736","https://openalex.org/W2165255548","https://openalex.org/W2508263135","https://openalex.org/W2582743722","https://openalex.org/W2765686399","https://openalex.org/W2793622104","https://openalex.org/W2911228036","https://openalex.org/W3022128292","https://openalex.org/W3160185070","https://openalex.org/W3212238494","https://openalex.org/W4225407832","https://openalex.org/W4235169531","https://openalex.org/W4250310729","https://openalex.org/W4366742425","https://openalex.org/W4383033131","https://openalex.org/W4386765308","https://openalex.org/W6632267817","https://openalex.org/W6637131181","https://openalex.org/W6683501972"],"related_works":["https://openalex.org/W4287880334","https://openalex.org/W4366700029","https://openalex.org/W4285230481","https://openalex.org/W4385769873","https://openalex.org/W2015759683","https://openalex.org/W4281634296","https://openalex.org/W4319161863","https://openalex.org/W2371687270","https://openalex.org/W2033914206","https://openalex.org/W2042327336"],"abstract_inverted_index":{"Digital":[0],"PCR":[1],"(dPCR)":[2],"is":[3,40,122,203],"a":[4,112,125,129,134,174],"highly":[5],"accurate":[6],"technique":[7],"for":[8,65,102,115,196],"the":[9,47,50,94,139,162,177,185],"quantification":[10],"of":[11,29,33,46,49,89,96,128,141,143,148,179],"target":[12,51],"nucleic":[13],"acid(s).":[14],"It":[15],"has":[16],"shown":[17],"great":[18],"potential":[19],"in":[20,156],"clinical":[21],"applications,":[22],"like":[23],"tumor":[24],"liquid":[25],"biopsy":[26],"and":[27,67,72,99,133,146,165,193],"validation":[28],"biomarkers.":[30],"Accurate":[31],"classification":[32],"partitions":[34,149],"based":[35,123],"on":[36,69,85,124],"end-point":[37],"fluorescence":[38],"intensities":[39],"crucial":[41],"to":[42,62],"avoid":[43],"biased":[44],"estimators":[45],"concentration":[48],"molecules.":[52],"We":[53],"have":[54,110],"evaluated":[55,79],"many":[56],"clustering":[57,90,198],"methods,":[58,91,98],"from":[59],"general-purpose":[60],"methods":[61,64],"specific":[63],"dPCR":[66,118,157,181],"flowcytometry,":[68],"both":[70],"simulated":[71,187],"real-life":[73],"data.":[74,119,158],"Clustering":[75],"method":[76,114,121,202],"performance":[77],"was":[78],"by":[80],"simulating":[81,116],"various":[82],"scenarios.":[83],"Based":[84],"our":[86],"extensive":[87],"comparison":[88],"we":[92,109],"describe":[93],"limits":[95],"these":[97],"formulate":[100],"guidelines":[101],"choosing":[103],"an":[104,206],"appropriate":[105],"method.":[106],"In":[107],"addition,":[108],"developed":[111],"novel":[113],"realistic":[117],"The":[120,200],"mixture":[126],"distribution":[127],"Poisson":[130],"point":[131],"process":[132],"skew-$t$":[135],"distribution,":[136],"which":[137],"enables":[138],"generation":[140],"irregularities":[142],"cluster":[144],"shapes":[145],"randomness":[147],"between":[150],"clusters":[151],"('rain')":[152],"as":[153,173,191,205],"commonly":[154],"observed":[155],"Users":[159],"can":[160,189],"fine-tune":[161],"model":[163],"parameters":[164],"generate":[166],"labeled":[167,186],"datasets,":[168],"using":[169],"their":[170],"own":[171],"data":[172,182,188,195],"template.":[175],"Besides,":[176],"database":[178],"experimental":[180],"augmented":[183],"with":[184],"serve":[190],"training":[192],"testing":[194],"new":[197],"methods.":[199],"simulation":[201],"available":[204],"R":[207],"Shiny":[208],"app.":[209]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
