{"id":"https://openalex.org/W4394761846","doi":"https://doi.org/10.1093/bib/bbae119","title":"A microbial knowledge graph-based deep learning model for predicting candidate microbes for target hosts","display_name":"A microbial knowledge graph-based deep learning model for predicting candidate microbes for target hosts","publication_year":2024,"publication_date":"2024-03-27","ids":{"openalex":"https://openalex.org/W4394761846","doi":"https://doi.org/10.1093/bib/bbae119","pmid":"https://pubmed.ncbi.nlm.nih.gov/38555472"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae119","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae119","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbae119","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064538645","display_name":"Jie Pan","orcid":"https://orcid.org/0000-0002-4993-298X"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Pan","raw_affiliation_strings":["College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China"],"raw_orcid":"https://orcid.org/0000-0002-4993-298X","affiliations":[{"raw_affiliation_string":"College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I1327237609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004255982","display_name":"Zhen Zhang","orcid":"https://orcid.org/0000-0001-7253-0076"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen Zhang","raw_affiliation_strings":["College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I1327237609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100349375","display_name":"Ying Li","orcid":"https://orcid.org/0000-0001-5479-9119"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Li","raw_affiliation_strings":["College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I1327237609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078383462","display_name":"Jiaoyang Yu","orcid":"https://orcid.org/0000-0001-8004-9952"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiaoyang Yu","raw_affiliation_strings":["College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I1327237609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhuhong You","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710129 , China"],"raw_orcid":"https://orcid.org/0000-0003-1266-2696","affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710129 , China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083925831","display_name":"Chenyu Li","orcid":"https://orcid.org/0000-0001-7434-6571"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenyu Li","raw_affiliation_strings":["College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I1327237609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054299720","display_name":"Shixu Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shixu Wang","raw_affiliation_strings":["College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I1327237609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089479809","display_name":"Minghui Zhu","orcid":"https://orcid.org/0000-0003-2251-1496"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Minghui Zhu","raw_affiliation_strings":["College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I1327237609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089828358","display_name":"Fengzhi Ren","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fengzhi Ren","raw_affiliation_strings":["National Microbial Medicine Engineering & Research Center , Shijiazhuang 050015, Hebei , China","North China Pharmaceutical Group , Shijiazhuang 050015, Hebei , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Microbial Medicine Engineering & Research Center , Shijiazhuang 050015, Hebei , China","institution_ids":[]},{"raw_affiliation_string":"North China Pharmaceutical Group , Shijiazhuang 050015, Hebei , China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100763261","display_name":"Xuexia Zhang","orcid":"https://orcid.org/0000-0002-5031-8936"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xuexia Zhang","raw_affiliation_strings":["National Microbial Medicine Engineering & Research Center , Shijiazhuang 050015, Hebei , China","North China Pharmaceutical Group , Shijiazhuang 050015, Hebei , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Microbial Medicine Engineering & Research Center , Shijiazhuang 050015, Hebei , China","institution_ids":[]},{"raw_affiliation_string":"North China Pharmaceutical Group , Shijiazhuang 050015, Hebei , China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100834640","display_name":"Yanmei Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanmei Sun","raw_affiliation_strings":["College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I1327237609"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100340278","display_name":"Shiwei Wang","orcid":"https://orcid.org/0000-0001-8890-9080"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shiwei Wang","raw_affiliation_strings":["College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I1327237609"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.6795,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.83342616,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"25","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9575999975204468,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.7507765293121338},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5948894023895264},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5099481344223022},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5026214122772217},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.4885910153388977},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.48455777764320374},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.48149240016937256},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4305609464645386},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.42530545592308044},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3173421621322632},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.23576194047927856},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19240176677703857},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13453930616378784},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09678798913955688}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7507765293121338},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5948894023895264},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5099481344223022},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5026214122772217},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.4885910153388977},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48455777764320374},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.48149240016937256},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4305609464645386},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.42530545592308044},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3173421621322632},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.23576194047927856},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19240176677703857},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13453930616378784},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09678798913955688}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae119","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae119","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38555472","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38555472","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10981679","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10981679","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10981679/pdf/bbae119.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae119","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae119","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.4000000059604645}],"awards":[{"id":"https://openalex.org/G3639475604","display_name":null,"funder_award_id":"62325308","funder_id":"https://openalex.org/F4320336125","funder_display_name":"National Science Fund for Distinguished Young Scholars"},{"id":"https://openalex.org/G4434243277","display_name":null,"funder_award_id":"2022FY101100","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7882737384","display_name":null,"funder_award_id":"62325308","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8247529839","display_name":"\u94dc\u7eff\u5047\u5355\u80de\u83cc\u80de\u5916\u591a\u7cd6Psl\u548c\u7b2c\u4e8c\u4fe1\u4f7fc-di-GMP\u4ea4\u4e92\u8c03\u63a7\u7684\u5206\u5b50\u673a\u7406","funder_award_id":"31770152","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8748380971","display_name":null,"funder_award_id":"32170114","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320336125","display_name":"National Science Fund for Distinguished Young Scholars","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":70,"referenced_works":["https://openalex.org/W168564468","https://openalex.org/W1529533208","https://openalex.org/W1888005072","https://openalex.org/W1931590386","https://openalex.org/W2066937690","https://openalex.org/W2082538292","https://openalex.org/W2097308346","https://openalex.org/W2124463526","https://openalex.org/W2127795553","https://openalex.org/W2131415145","https://openalex.org/W2131571251","https://openalex.org/W2131858707","https://openalex.org/W2147637673","https://openalex.org/W2154851992","https://openalex.org/W2165253681","https://openalex.org/W2168637722","https://openalex.org/W2170747616","https://openalex.org/W2195485567","https://openalex.org/W2272509401","https://openalex.org/W2465613542","https://openalex.org/W2560674852","https://openalex.org/W2595195543","https://openalex.org/W2604165577","https://openalex.org/W2604314403","https://openalex.org/W2765950793","https://openalex.org/W2789926271","https://openalex.org/W2806512480","https://openalex.org/W2900531459","https://openalex.org/W2936781144","https://openalex.org/W2945623882","https://openalex.org/W2963012943","https://openalex.org/W2963514026","https://openalex.org/W2963775979","https://openalex.org/W2990632561","https://openalex.org/W2997837621","https://openalex.org/W2998220730","https://openalex.org/W3005298035","https://openalex.org/W3027773295","https://openalex.org/W3048846953","https://openalex.org/W3081689004","https://openalex.org/W3104097132","https://openalex.org/W3125745788","https://openalex.org/W3134084134","https://openalex.org/W3136918052","https://openalex.org/W3152335982","https://openalex.org/W3171405144","https://openalex.org/W3174714560","https://openalex.org/W3185942550","https://openalex.org/W3202488381","https://openalex.org/W3209678692","https://openalex.org/W3212898937","https://openalex.org/W4205161829","https://openalex.org/W4205203149","https://openalex.org/W4205209099","https://openalex.org/W4206958745","https://openalex.org/W4211248483","https://openalex.org/W4214618313","https://openalex.org/W4221010696","https://openalex.org/W4234552385","https://openalex.org/W4285188807","https://openalex.org/W4309506674","https://openalex.org/W4380885377","https://openalex.org/W4387242011","https://openalex.org/W6678830454","https://openalex.org/W6679713772","https://openalex.org/W6761272735","https://openalex.org/W6770209639","https://openalex.org/W6783134696","https://openalex.org/W6805282568","https://openalex.org/W6805457623"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W4388282505","https://openalex.org/W3198631238","https://openalex.org/W3139084279"],"abstract_inverted_index":{"Predicting":[0],"interactions":[1,42],"between":[2,28],"microbes":[3,29,110],"and":[4,13,16,25,30,81,125,175,178,190],"hosts":[5,31],"plays":[6],"critical":[7],"roles":[8],"in":[9,87,168],"microbiome":[10],"population":[11],"genetics":[12],"microbial":[14,64,93,101],"ecology":[15],"evolution.":[17],"How":[18],"to":[19,77,96,107,140,158,193,223],"systematically":[20],"characterize":[21],"the":[22,58,78,142,148,160,166,173,196,209],"sophisticated":[23],"mechanisms":[24],"signal":[26],"interplay":[27],"is":[32,156],"a":[33,98,118,135,182],"significant":[34],"challenge":[35],"for":[36,63,111,188,232],"global":[37,143,176],"health":[38],"risks.":[39],"Identifying":[40],"microbe-host":[41],"(MHIs)":[43],"can":[44,204],"not":[45],"only":[46],"provide":[47],"helpful":[48],"insights":[49],"into":[50,181],"their":[51,129],"fundamental":[52],"regulatory":[53],"mechanisms,":[54],"but":[55],"also":[56,216],"facilitate":[57],"development":[59],"of":[60,83,147],"targeted":[61],"therapies":[62],"infections.":[65],"In":[66],"recent":[67],"years,":[68],"computational":[69],"methods":[70],"have":[71],"become":[72],"an":[73],"appealing":[74],"alternative":[75],"due":[76],"high":[79],"risk":[80],"cost":[82],"wet-lab":[84],"experiments.":[85],"Therefore,":[86],"this":[88],"study,":[89],"we":[90,171,215],"utilized":[91],"rich":[92],"metagenomic":[94],"information":[95,146,164,177],"construct":[97],"novel":[99],"heterogeneous":[100],"network":[102,186],"(HMN)-based":[103],"model":[104,203],"named":[105],"KGVHI":[106,115,133,227],"predict":[108],"candidate":[109],"target":[112],"hosts.":[113],"Specifically,":[114],"first":[116],"built":[117],"HMN":[119],"by":[120],"integrating":[121],"human":[122],"proteins,":[123],"viruses":[124],"pathogenic":[126,219],"bacteria":[127,220],"with":[128],"biological":[130,162],"attributes.":[131],"Then":[132],"adopted":[134],"knowledge":[136],"graph":[137],"embedding":[138],"strategy":[139],"capture":[141],"topological":[144],"structure":[145],"whole":[149],"network.":[150],"A":[151],"natural":[152],"language":[153],"processing":[154],"algorithm":[155],"used":[157],"extract":[159],"local":[161,174],"attribute":[163],"from":[165],"nodes":[167],"HMN.":[169],"Finally,":[170],"combined":[172],"fed":[179],"it":[180],"blended":[183],"deep":[184],"neural":[185],"(DNN)":[187],"training":[189],"prediction.":[191],"Compared":[192],"state-of-the-art":[194],"methods,":[195],"comprehensive":[197],"experimental":[198],"results":[199,207],"show":[200],"that":[201,226],"our":[202],"obtain":[205],"excellent":[206,229],"on":[208],"corresponding":[210],"three":[211],"MHI":[212,234],"datasets.":[213],"Furthermore,":[214],"conducted":[217],"two":[218],"case":[221],"studies":[222],"further":[224],"indicate":[225],"has":[228],"predictive":[230],"capabilities":[231],"potential":[233],"pairs.":[235]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
