{"id":"https://openalex.org/W4394764026","doi":"https://doi.org/10.1093/bib/bbae117","title":"Advances in phage\u2013host interaction prediction: <i>in silico</i> method enhances the development of phage therapies","display_name":"Advances in phage\u2013host interaction prediction: <i>in silico</i> method enhances the development of phage therapies","publication_year":2024,"publication_date":"2024-03-27","ids":{"openalex":"https://openalex.org/W4394764026","doi":"https://doi.org/10.1093/bib/bbae117","pmid":"https://pubmed.ncbi.nlm.nih.gov/38555471"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae117","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae117","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae117/57108865/bbae117.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae117/57108865/bbae117.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101335864","display_name":"Wanchun Nie","orcid":null},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wanchun Nie","raw_affiliation_strings":["School of Health Science and Engineering, University of Shanghai for Science and Technology , Shanghai, 200093 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology , Shanghai, 200093 , China","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001448536","display_name":"Tianyi Qiu","orcid":null},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210127074","display_name":"Zhongshan Hospital","ror":"https://ror.org/032x22645","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210127074"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tianyi Qiu","raw_affiliation_strings":["Fudan University , Zhongshan Hospital; Intelligent Medicine Institute, , Shanghai, 200032 , China","Institute of Clinical Science , Zhongshan Hospital; Intelligent Medicine Institute, , Shanghai, 200032 , China","Shanghai Institute of Infectious Disease and Biosecurity, Fudan University , Shanghai, 200032 , China"],"raw_orcid":"https://orcid.org/0000-0001-6897-3923","affiliations":[{"raw_affiliation_string":"Fudan University , Zhongshan Hospital; Intelligent Medicine Institute, , Shanghai, 200032 , China","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4210127074"]},{"raw_affiliation_string":"Institute of Clinical Science , Zhongshan Hospital; Intelligent Medicine Institute, , Shanghai, 200032 , China","institution_ids":["https://openalex.org/I4210127074"]},{"raw_affiliation_string":"Shanghai Institute of Infectious Disease and Biosecurity, Fudan University , Shanghai, 200032 , China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048899906","display_name":"Yiwen Wei","orcid":"https://orcid.org/0000-0002-8216-6156"},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiwen Wei","raw_affiliation_strings":["School of Health Science and Engineering, University of Shanghai for Science and Technology , Shanghai, 200093 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology , Shanghai, 200093 , China","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100669037","display_name":"Hao Ding","orcid":"https://orcid.org/0000-0001-8456-8311"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210127074","display_name":"Zhongshan Hospital","ror":"https://ror.org/032x22645","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210127074"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Ding","raw_affiliation_strings":["Fudan University , Zhongshan Hospital; Intelligent Medicine Institute, , Shanghai, 200032 , China","Institute of Clinical Science , Zhongshan Hospital; Intelligent Medicine Institute, , Shanghai, 200032 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fudan University , Zhongshan Hospital; Intelligent Medicine Institute, , Shanghai, 200032 , China","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4210127074"]},{"raw_affiliation_string":"Institute of Clinical Science , Zhongshan Hospital; Intelligent Medicine Institute, , Shanghai, 200032 , China","institution_ids":["https://openalex.org/I4210127074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100521411","display_name":"Zhixiang Guo","orcid":"https://orcid.org/0009-0006-1987-2660"},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhixiang Guo","raw_affiliation_strings":["School of Health Science and Engineering, University of Shanghai for Science and Technology , Shanghai, 200093 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology , Shanghai, 200093 , China","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061840111","display_name":"Jingxuan Qiu","orcid":"https://orcid.org/0000-0001-8420-4593"},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingxuan Qiu","raw_affiliation_strings":["School of Health Science and Engineering, University of Shanghai for Science and Technology , Shanghai, 200093 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology , Shanghai, 200093 , China","institution_ids":["https://openalex.org/I148128674"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5101335864"],"corresponding_institution_ids":["https://openalex.org/I148128674"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":11.0462,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.98686526,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"25","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9793999791145325,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.8377185463905334},{"id":"https://openalex.org/keywords/phage-therapy","display_name":"Phage therapy","score":0.672295331954956},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6717124581336975},{"id":"https://openalex.org/keywords/bacteriophage","display_name":"Bacteriophage","score":0.6601510047912598},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.47932636737823486},{"id":"https://openalex.org/keywords/phage-typing","display_name":"Phage typing","score":0.4746057391166687},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.46021923422813416},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.45473629236221313},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41028547286987305},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.36986857652664185},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11771270632743835},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.11228084564208984},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06415233016014099}],"concepts":[{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.8377185463905334},{"id":"https://openalex.org/C2779256223","wikidata":"https://www.wikidata.org/wiki/Q611870","display_name":"Phage therapy","level":5,"score":0.672295331954956},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6717124581336975},{"id":"https://openalex.org/C2776441376","wikidata":"https://www.wikidata.org/wiki/Q165028","display_name":"Bacteriophage","level":4,"score":0.6601510047912598},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.47932636737823486},{"id":"https://openalex.org/C57326107","wikidata":"https://www.wikidata.org/wiki/Q4244196","display_name":"Phage typing","level":3,"score":0.4746057391166687},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.46021923422813416},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.45473629236221313},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41028547286987305},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.36986857652664185},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11771270632743835},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.11228084564208984},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06415233016014099},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000071059","descriptor_name":"Phage Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071059","descriptor_name":"Phage Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071059","descriptor_name":"Phage Therapy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000071059","descriptor_name":"Phage Therapy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000071059","descriptor_name":"Phage Therapy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000071059","descriptor_name":"Phage Therapy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":false},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae117","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae117","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae117/57108865/bbae117.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38555471","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38555471","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10981677","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10981677","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10981677/pdf/bbae117.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae117","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae117","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae117/57108865/bbae117.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7195728837","display_name":null,"funder_award_id":"32000470","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7496197155","display_name":null,"funder_award_id":"2022YFF1101100","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7861401651","display_name":null,"funder_award_id":"2022YFF1101100","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G906612804","display_name":null,"funder_award_id":"32370697","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4394764026.pdf","grobid_xml":"https://content.openalex.org/works/W4394764026.grobid-xml"},"referenced_works_count":97,"referenced_works":["https://openalex.org/W24553703","https://openalex.org/W1563631267","https://openalex.org/W1972708645","https://openalex.org/W1978447041","https://openalex.org/W1988102426","https://openalex.org/W2008351731","https://openalex.org/W2019197162","https://openalex.org/W2024014229","https://openalex.org/W2035396875","https://openalex.org/W2044390539","https://openalex.org/W2047032063","https://openalex.org/W2047943475","https://openalex.org/W2054246318","https://openalex.org/W2055043387","https://openalex.org/W2055585753","https://openalex.org/W2055666215","https://openalex.org/W2065171017","https://openalex.org/W2076048958","https://openalex.org/W2087715897","https://openalex.org/W2089695344","https://openalex.org/W2093882865","https://openalex.org/W2096128575","https://openalex.org/W2096525273","https://openalex.org/W2098386120","https://openalex.org/W2100228443","https://openalex.org/W2119859604","https://openalex.org/W2122954888","https://openalex.org/W2124166542","https://openalex.org/W2126142701","https://openalex.org/W2128769815","https://openalex.org/W2130652100","https://openalex.org/W2140490100","https://openalex.org/W2148630429","https://openalex.org/W2155368965","https://openalex.org/W2159482845","https://openalex.org/W2159954944","https://openalex.org/W2169244146","https://openalex.org/W2194181707","https://openalex.org/W2245444176","https://openalex.org/W2290559225","https://openalex.org/W2291003811","https://openalex.org/W2296574808","https://openalex.org/W2345960958","https://openalex.org/W2399809721","https://openalex.org/W2559100382","https://openalex.org/W2594385802","https://openalex.org/W2734399491","https://openalex.org/W2766750388","https://openalex.org/W2769959144","https://openalex.org/W2791956910","https://openalex.org/W2792803089","https://openalex.org/W2895726097","https://openalex.org/W2901212243","https://openalex.org/W2907683291","https://openalex.org/W2911362701","https://openalex.org/W2912510147","https://openalex.org/W2913095190","https://openalex.org/W2924638868","https://openalex.org/W2982889862","https://openalex.org/W2990632561","https://openalex.org/W2995081665","https://openalex.org/W3017680297","https://openalex.org/W3032757820","https://openalex.org/W3051688178","https://openalex.org/W3086081693","https://openalex.org/W3095583226","https://openalex.org/W3102245668","https://openalex.org/W3112490583","https://openalex.org/W3118981004","https://openalex.org/W3122809531","https://openalex.org/W3130434115","https://openalex.org/W3134954922","https://openalex.org/W3147885797","https://openalex.org/W3173126360","https://openalex.org/W3196522895","https://openalex.org/W3215755691","https://openalex.org/W4210795196","https://openalex.org/W4239634997","https://openalex.org/W4239871258","https://openalex.org/W4293456291","https://openalex.org/W4294216483","https://openalex.org/W4296373993","https://openalex.org/W4300479868","https://openalex.org/W4360618759","https://openalex.org/W4360994011","https://openalex.org/W4366772967","https://openalex.org/W4376890981","https://openalex.org/W4377157591","https://openalex.org/W4378378017","https://openalex.org/W4380050682","https://openalex.org/W4380885377","https://openalex.org/W4385212722","https://openalex.org/W4391766310","https://openalex.org/W6600995781","https://openalex.org/W6797259356","https://openalex.org/W6842209503","https://openalex.org/W6860890910"],"related_works":["https://openalex.org/W2497163605","https://openalex.org/W4231940808","https://openalex.org/W2381754483","https://openalex.org/W4321372285","https://openalex.org/W2353804589","https://openalex.org/W3124373844","https://openalex.org/W4287616759","https://openalex.org/W3197010382","https://openalex.org/W2063400035","https://openalex.org/W2981490961"],"abstract_inverted_index":{"Phages":[0],"can":[1],"specifically":[2],"recognize":[3],"and":[4,18,22,34,74,99,107,111,122,139],"kill":[5],"bacteria,":[6,41],"which":[7,130],"lead":[8],"to":[9,67,79,132],"important":[10],"application":[11,120],"value":[12],"of":[13,24,31,38,49,113,126,136,142],"bacteriophage":[14],"in":[15,61,100,104],"bacterial":[16,26],"identification":[17],"typing,":[19],"livestock":[20],"aquaculture":[21],"treatment":[23],"human":[25],"infection.":[27],"Considering":[28],"the":[29,35,109,119,133,140],"variety":[30],"human-infected":[32],"bacteria":[33],"continuous":[36],"discovery":[37],"numerous":[39],"pathogenic":[40],"screening":[42],"suitable":[43],"therapeutic":[44],"phages":[45],"that":[46],"are":[47,72],"capable":[48],"infecting":[50],"pathogens":[51],"from":[52],"massive":[53],"phage":[54,62,144],"databases":[55,98],"has":[56],"been":[57],"a":[58,84],"principal":[59],"step":[60],"therapy":[63],"design.":[64],"Experimental":[65],"methods":[66,92,106],"identify":[68],"phage-host":[69],"interaction":[70],"(PHI)":[71],"time-consuming":[73],"expensive;":[75],"high-throughput":[76],"computational":[77,127],"method":[78],"predict":[80],"PHI":[81],"is":[82],"therefore":[83],"potential":[85],"substitute.":[86],"Here,":[87],"we":[88,117],"systemically":[89],"review":[90],"bioinformatic":[91],"for":[93],"predicting":[94],"PHI,":[95],"introduce":[96],"reference":[97],"silico":[101],"models":[102,138],"applied":[103],"these":[105],"highlight":[108],"strengths":[110],"challenges":[112],"current":[114],"tools.":[115],"Finally,":[116],"discuss":[118],"scope":[121],"future":[123],"research":[124],"direction":[125],"prediction":[128,137],"methods,":[129],"contribute":[131],"performance":[134],"improvement":[135],"development":[141],"personalized":[143],"therapy.":[145]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":6}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2024-04-13T00:00:00"}
