{"id":"https://openalex.org/W4393100310","doi":"https://doi.org/10.1093/bib/bbae107","title":"pathMap: a path-based mapping tool for long noisy reads with high sensitivity","display_name":"pathMap: a path-based mapping tool for long noisy reads with high sensitivity","publication_year":2024,"publication_date":"2024-01-22","ids":{"openalex":"https://openalex.org/W4393100310","doi":"https://doi.org/10.1093/bib/bbae107","pmid":"https://pubmed.ncbi.nlm.nih.gov/38517696"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae107","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae107","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae107/57011660/bbae107.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae107/57011660/bbae107.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071217704","display_name":"Ze\u2010Gang Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I2799293361","display_name":"Baoji University of Arts and Sciences","ror":"https://ror.org/05nx0xs09","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799293361"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Ze-Gang Wei","raw_affiliation_strings":["Division of Biomedical Engineering , Department of Computer Science and Department of Mechanical Engineering, , Saskatoon, SK S7N 5A9 , Canada","School of Physics and Opto-Electronics Technology, Baoji University of Arts and Sciences , Baoji, 721016 , China","University of Saskatchewan , Department of Computer Science and Department of Mechanical Engineering, , Saskatoon, SK S7N 5A9 , Canada","Division of Biomedical Engineering, Department of Computer Science and Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, SK S7N 5A9, Canada"],"raw_orcid":"https://orcid.org/0000-0002-0261-0529","affiliations":[{"raw_affiliation_string":"Division of Biomedical Engineering , Department of Computer Science and Department of Mechanical Engineering, , Saskatoon, SK S7N 5A9 , Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"School of Physics and Opto-Electronics Technology, Baoji University of Arts and Sciences , Baoji, 721016 , China","institution_ids":["https://openalex.org/I2799293361"]},{"raw_affiliation_string":"University of Saskatchewan , Department of Computer Science and Department of Mechanical Engineering, , Saskatoon, SK S7N 5A9 , Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"Division of Biomedical Engineering, Department of Computer Science and Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, SK S7N 5A9, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100356745","display_name":"Xiaodan Zhang","orcid":"https://orcid.org/0000-0001-8192-0666"},"institutions":[{"id":"https://openalex.org/I2799293361","display_name":"Baoji University of Arts and Sciences","ror":"https://ror.org/05nx0xs09","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799293361"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao-Dan Zhang","raw_affiliation_strings":["School of Physics and Opto-Electronics Technology, Baoji University of Arts and Sciences , Baoji, 721016 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Physics and Opto-Electronics Technology, Baoji University of Arts and Sciences , Baoji, 721016 , China","institution_ids":["https://openalex.org/I2799293361"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039095505","display_name":"Xing-Guo Fan","orcid":null},"institutions":[{"id":"https://openalex.org/I2799293361","display_name":"Baoji University of Arts and Sciences","ror":"https://ror.org/05nx0xs09","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799293361"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xing-Guo Fan","raw_affiliation_strings":["School of Physics and Opto-Electronics Technology, Baoji University of Arts and Sciences , Baoji, 721016 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Physics and Opto-Electronics Technology, Baoji University of Arts and Sciences , Baoji, 721016 , China","institution_ids":["https://openalex.org/I2799293361"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109662705","display_name":"Yu Qian","orcid":"https://orcid.org/0000-0002-1926-6218"},"institutions":[{"id":"https://openalex.org/I2799293361","display_name":"Baoji University of Arts and Sciences","ror":"https://ror.org/05nx0xs09","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799293361"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yu Qian","raw_affiliation_strings":["School of Physics and Opto-Electronics Technology, Baoji University of Arts and Sciences , Baoji, 721016 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Physics and Opto-Electronics Technology, Baoji University of Arts and Sciences , Baoji, 721016 , China","institution_ids":["https://openalex.org/I2799293361"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115602474","display_name":"Fei Liu","orcid":"https://orcid.org/0000-0003-1175-4070"},"institutions":[{"id":"https://openalex.org/I2799293361","display_name":"Baoji University of Arts and Sciences","ror":"https://ror.org/05nx0xs09","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799293361"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fei Liu","raw_affiliation_strings":["School of Physics and Opto-Electronics Technology, Baoji University of Arts and Sciences , Baoji, 721016 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Physics and Opto-Electronics Technology, Baoji University of Arts and Sciences , Baoji, 721016 , China","institution_ids":["https://openalex.org/I2799293361"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["Division of Biomedical Engineering , Department of Computer Science and Department of Mechanical Engineering, , Saskatoon, SK S7N 5A9 , Canada","University of Saskatchewan , Department of Computer Science and Department of Mechanical Engineering, , Saskatoon, SK S7N 5A9 , Canada","Division of Biomedical Engineering, Department of Computer Science and Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, SK S7N 5A9, Canada"],"raw_orcid":"https://orcid.org/0000-0002-4593-9332","affiliations":[{"raw_affiliation_string":"Division of Biomedical Engineering , Department of Computer Science and Department of Mechanical Engineering, , Saskatoon, SK S7N 5A9 , Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"University of Saskatchewan , Department of Computer Science and Department of Mechanical Engineering, , Saskatoon, SK S7N 5A9 , Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"Division of Biomedical Engineering, Department of Computer Science and Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, SK S7N 5A9, Canada","institution_ids":["https://openalex.org/I32625721"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5091157395","https://openalex.org/A5109662705"],"corresponding_institution_ids":["https://openalex.org/I2799293361","https://openalex.org/I32625721"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03886073,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"25","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/minion","display_name":"Minion","score":0.862932026386261},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6849295496940613},{"id":"https://openalex.org/keywords/chaining","display_name":"Chaining","score":0.6035277843475342},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.5667495131492615},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5653772354125977},{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"Nanopore sequencing","score":0.5424590110778809},{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.5134583115577698},{"id":"https://openalex.org/keywords/directed-acyclic-graph","display_name":"Directed acyclic graph","score":0.4770369231700897},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4108082354068756},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3690239191055298},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3274582624435425},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.29172733426094055},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.21959367394447327},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20380160212516785},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.18064993619918823},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.180644690990448},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0970483124256134}],"concepts":[{"id":"https://openalex.org/C2779927696","wikidata":"https://www.wikidata.org/wiki/Q6865654","display_name":"Minion","level":5,"score":0.862932026386261},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6849295496940613},{"id":"https://openalex.org/C49020025","wikidata":"https://www.wikidata.org/wiki/Q1059099","display_name":"Chaining","level":2,"score":0.6035277843475342},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.5667495131492615},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5653772354125977},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.5424590110778809},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.5134583115577698},{"id":"https://openalex.org/C74197172","wikidata":"https://www.wikidata.org/wiki/Q1195339","display_name":"Directed acyclic graph","level":2,"score":0.4770369231700897},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4108082354068756},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3690239191055298},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3274582624435425},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.29172733426094055},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.21959367394447327},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20380160212516785},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.18064993619918823},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.180644690990448},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0970483124256134},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000081414","descriptor_name":"Nanopore Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081414","descriptor_name":"Nanopore Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081414","descriptor_name":"Nanopore Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081414","descriptor_name":"Nanopore Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081414","descriptor_name":"Nanopore Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbae107","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae107","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae107/57011660/bbae107.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38517696","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38517696","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbae107","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae107","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae107/57011660/bbae107.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6800000071525574,"id":"https://metadata.un.org/sdg/14","display_name":"Life below water"}],"awards":[{"id":"https://openalex.org/G3406353416","display_name":null,"funder_award_id":"23JK0287","funder_id":"https://openalex.org/F4320325627","funder_display_name":"Education Department of Shaanxi Province"},{"id":"https://openalex.org/G589144820","display_name":null,"funder_award_id":"202108615064","funder_id":"https://openalex.org/F4320322725","funder_display_name":"China Scholarship Council"}],"funders":[{"id":"https://openalex.org/F4320321448","display_name":"Baoji University of Arts And Sciences","ror":"https://ror.org/05nx0xs09"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320325627","display_name":"Education Department of Shaanxi Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4393100310.pdf"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1987760161","https://openalex.org/W1991003805","https://openalex.org/W2025648894","https://openalex.org/W2026861756","https://openalex.org/W2137759177","https://openalex.org/W2146005104","https://openalex.org/W2166694026","https://openalex.org/W2191136822","https://openalex.org/W2194172909","https://openalex.org/W2337261418","https://openalex.org/W2432520134","https://openalex.org/W2521004200","https://openalex.org/W2521124250","https://openalex.org/W2604364312","https://openalex.org/W2607937729","https://openalex.org/W2789843538","https://openalex.org/W2804477062","https://openalex.org/W2810425915","https://openalex.org/W2921129204","https://openalex.org/W2950121474","https://openalex.org/W3011696475","https://openalex.org/W3034581902","https://openalex.org/W3046401484","https://openalex.org/W3047578107","https://openalex.org/W3088711112","https://openalex.org/W3134592937","https://openalex.org/W3137029520","https://openalex.org/W3162575686","https://openalex.org/W3193844559","https://openalex.org/W3195146045","https://openalex.org/W4200611247","https://openalex.org/W4210851756","https://openalex.org/W4225293672","https://openalex.org/W4226228670","https://openalex.org/W4229025888","https://openalex.org/W4321479723","https://openalex.org/W4324116459","https://openalex.org/W4360594764","https://openalex.org/W4379054112","https://openalex.org/W4394666350","https://openalex.org/W6674561012","https://openalex.org/W6791877899","https://openalex.org/W6850060711"],"related_works":["https://openalex.org/W2002723386","https://openalex.org/W2749851556","https://openalex.org/W2765793069","https://openalex.org/W2550586733","https://openalex.org/W4200050032","https://openalex.org/W2515795842","https://openalex.org/W2324462508","https://openalex.org/W3121387483","https://openalex.org/W2951181326","https://openalex.org/W2607669908"],"abstract_inverted_index":{"With":[0],"the":[1,9,26,49,86,99,112,118,122,159,174,184],"rapid":[2],"development":[3],"of":[4,25,161,181,213],"single-molecule":[5],"sequencing":[6,193],"(SMS)":[7],"technologies,":[8],"output":[10],"read":[11],"length":[12],"is":[13,23,35,74,199],"continuously":[14],"increasing.":[15],"Mapping":[16,33],"such":[17,143],"reads":[18,80],"onto":[19],"a":[20,37,68,90,107],"reference":[21,50],"genome":[22],"one":[24],"most":[27],"fundamental":[28],"tasks":[29],"in":[30,98,111,121],"sequence":[31,203],"analysis.":[32,61],"sensitivity":[34,42,176],"becoming":[36],"major":[38],"concern":[39],"since":[40],"high":[41,82,129],"can":[43,131],"detect":[44],"more":[45,53,125,167,200,206],"aligned":[46,54],"regions":[47],"on":[48,150],"and":[51,135,146,152,172,179,190,205,210],"obtain":[52],"bases,":[55],"which":[56],"are":[57],"useful":[58],"for":[59,77,187],"downstream":[60],"In":[62,196],"this":[63],"study,":[64],"we":[65],"present":[66],"pathMap,":[67],"novel":[69],"k-mer":[70,101],"graph-based":[71],"mapper":[72,186],"that":[73,156],"specifically":[75],"designed":[76],"mapping":[78,141,175],"SMS":[79],"with":[81,128],"sensitivity.":[83],"By":[84],"viewing":[85],"alignment":[87],"chain":[88],"as":[89,93,96,106,144],"path":[91,108,120],"containing":[92],"many":[94],"anchors":[95],"possible":[97],"matched":[100],"graph,":[102],"pathMap":[103,115,157,198],"treats":[104],"chaining":[105],"selection":[109],"problem":[110],"directed":[113],"graph.":[114],"iteratively":[116],"searches":[117],"longest":[119],"remaining":[123],"nodes;":[124],"candidate":[126],"chains":[127,163],"quality":[130],"be":[132],"effectively":[133],"detected":[134],"aligned.":[136],"Compared":[137],"to":[138,202,208],"other":[139],"state-of-the-art":[140],"methods":[142],"minimap2":[145],"Winnowmap2,":[147],"experiment":[148],"results":[149],"simulated":[151],"real-life":[153],"datasets":[154],"demonstrate":[155],"obtains":[158],"number":[160],"mapped":[162],"at":[164],"least":[165],"11.50%":[166],"than":[168],"its":[169],"closest":[170],"competitor":[171],"increases":[173],"by":[177],"17.28%":[178],"13.84%":[180],"bases":[182],"over":[183],"next-best":[185],"Pacific":[188],"Biosciences":[189],"Oxford":[191],"Nanopore":[192],"data,":[194],"respectively.":[195],"addition,":[197],"robust":[201],"errors":[204],"sensitive":[207],"species-":[209],"strain-specific":[211],"identification":[212],"pathogens":[214],"using":[215],"MinION":[216],"reads.":[217]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
