{"id":"https://openalex.org/W4392393183","doi":"https://doi.org/10.1093/bib/bbae064","title":"RNAdvisor: a comprehensive benchmarking tool for the measure and prediction of RNA structural model quality","display_name":"RNAdvisor: a comprehensive benchmarking tool for the measure and prediction of RNA structural model quality","publication_year":2024,"publication_date":"2024-01-22","ids":{"openalex":"https://openalex.org/W4392393183","doi":"https://doi.org/10.1093/bib/bbae064","pmid":"https://pubmed.ncbi.nlm.nih.gov/38436560"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae064","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae064/56822364/bbae064.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae064/56822364/bbae064.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101658860","display_name":"Cl\u00e9ment Bernard","orcid":"https://orcid.org/0009-0003-0117-9823"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Clement Bernard","raw_affiliation_strings":["IBISC , Univ Evry, , 91020 Evry-Courcouronnes , France","Universit\u00e9 Paris Saclay , Univ Evry, , 91020 Evry-Courcouronnes , France"],"raw_orcid":"https://orcid.org/0009-0003-0117-9823","affiliations":[{"raw_affiliation_string":"IBISC , Univ Evry, , 91020 Evry-Courcouronnes , France","institution_ids":["https://openalex.org/I4210107733"]},{"raw_affiliation_string":"Universit\u00e9 Paris Saclay , Univ Evry, , 91020 Evry-Courcouronnes , France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055433325","display_name":"Guillaume Postic","orcid":"https://orcid.org/0000-0002-0380-0092"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Postic","raw_affiliation_strings":["IBISC , Univ Evry, , 91020 Evry-Courcouronnes , France","Universit\u00e9 Paris Saclay , Univ Evry, , 91020 Evry-Courcouronnes , France"],"raw_orcid":"https://orcid.org/0000-0002-0380-0092","affiliations":[{"raw_affiliation_string":"IBISC , Univ Evry, , 91020 Evry-Courcouronnes , France","institution_ids":["https://openalex.org/I4210107733"]},{"raw_affiliation_string":"Universit\u00e9 Paris Saclay , Univ Evry, , 91020 Evry-Courcouronnes , France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000557257","display_name":"Sahar Ghannay","orcid":"https://orcid.org/0000-0002-7531-2522"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4387152856","display_name":"Laboratoire Interdisciplinaire des Sciences du Num\u00e9rique","ror":"https://ror.org/00rd81916","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4387152856"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sahar Ghannay","raw_affiliation_strings":["LISN - CNRS/Universit\u00e9 Paris-Saclay , France, 91400 Orsay , France"],"raw_orcid":"https://orcid.org/0000-0002-7531-2522","affiliations":[{"raw_affiliation_string":"LISN - CNRS/Universit\u00e9 Paris-Saclay , France, 91400 Orsay , France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4387152856"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091493314","display_name":"Fariza Tahi","orcid":"https://orcid.org/0000-0002-3975-5668"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Fariza Tahi","raw_affiliation_strings":["IBISC , Univ Evry, , 91020 Evry-Courcouronnes , France","Universit\u00e9 Paris Saclay , Univ Evry, , 91020 Evry-Courcouronnes , France"],"raw_orcid":"https://orcid.org/0000-0002-3975-5668","affiliations":[{"raw_affiliation_string":"IBISC , Univ Evry, , 91020 Evry-Courcouronnes , France","institution_ids":["https://openalex.org/I4210107733"]},{"raw_affiliation_string":"Universit\u00e9 Paris Saclay , Univ Evry, , 91020 Evry-Courcouronnes , France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5091493314"],"corresponding_institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.9756,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.86078074,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"25","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.8368936777114868},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7524706125259399},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.7002704739570618},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.6126483082771301},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5825759172439575},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5813567042350769},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.49747827649116516},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4544012248516083},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4190811216831207},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4101461172103882},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35713717341423035},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08571210503578186}],"concepts":[{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.8368936777114868},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7524706125259399},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.7002704739570618},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.6126483082771301},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5825759172439575},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5813567042350769},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.49747827649116516},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4544012248516083},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4190811216831207},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4101461172103882},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35713717341423035},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08571210503578186},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D008961","descriptor_name":"Models, Structural","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008961","descriptor_name":"Models, Structural","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008961","descriptor_name":"Models, Structural","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008961","descriptor_name":"Models, Structural","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008961","descriptor_name":"Models, Structural","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008961","descriptor_name":"Models, Structural","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbae064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae064","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae064/56822364/bbae064.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38436560","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38436560","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10939302","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10939302","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10939302/pdf/bbae064.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-04508073v1","is_oa":false,"landing_page_url":"https://univ-evry.hal.science/hal-04508073","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in Bioinformatics, 2024, 25 (2), pp.bbae064. &#x27E8;10.1093/bib/bbae064&#x27E9;","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae064","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae064/56822364/bbae064.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions","score":0.6000000238418579}],"awards":[{"id":"https://openalex.org/G3024506935","display_name":"Idex Paris-Saclay","funder_award_id":"ANR-11-IDEX-0003","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5209393470","display_name":"Data Science, Artificial Intelligence and Society","funder_award_id":"ANR-17-CONV-0003","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5242322233","display_name":null,"funder_award_id":"ANR-20-THIA-0013-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5452207638","display_name":"Universit\u00e9 Paris-Saclay Doctoral Programme in Artificial Intelligence","funder_award_id":"ANR-20-THIA-0013","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5724863866","display_name":null,"funder_award_id":"AD011014250","funder_id":"https://openalex.org/F4320326256","funder_display_name":"Grand \u00c9quipement National De Calcul Intensif"},{"id":"https://openalex.org/G6803667113","display_name":null,"funder_award_id":"ANR-17","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320326256","display_name":"Grand \u00c9quipement National De Calcul Intensif","ror":"https://ror.org/0010d1q40"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4392393183.pdf"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W1966343698","https://openalex.org/W1976961172","https://openalex.org/W1989777815","https://openalex.org/W1999613945","https://openalex.org/W2017838368","https://openalex.org/W2035091896","https://openalex.org/W2065283382","https://openalex.org/W2077064224","https://openalex.org/W2103589755","https://openalex.org/W2103894153","https://openalex.org/W2113267464","https://openalex.org/W2117451312","https://openalex.org/W2119896557","https://openalex.org/W2122339645","https://openalex.org/W2122774834","https://openalex.org/W2125677968","https://openalex.org/W2135300233","https://openalex.org/W2136295476","https://openalex.org/W2137736208","https://openalex.org/W2140454691","https://openalex.org/W2140673705","https://openalex.org/W2161151688","https://openalex.org/W2161776897","https://openalex.org/W2163141523","https://openalex.org/W2171706075","https://openalex.org/W2296335794","https://openalex.org/W2341963847","https://openalex.org/W2426496582","https://openalex.org/W2902320679","https://openalex.org/W2937399220","https://openalex.org/W2969715383","https://openalex.org/W2981540061","https://openalex.org/W3034567160","https://openalex.org/W3104468196","https://openalex.org/W3106154480","https://openalex.org/W3126546267","https://openalex.org/W3177828909","https://openalex.org/W3195820203","https://openalex.org/W3210418329","https://openalex.org/W3213615006","https://openalex.org/W4241935390","https://openalex.org/W4280512579","https://openalex.org/W4323037252","https://openalex.org/W4327550249","https://openalex.org/W6680905086","https://openalex.org/W6697144307"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2000169967","https://openalex.org/W3081644756"],"abstract_inverted_index":{"RNA":[0,29,117],"is":[1,14,20,31,42,96,182],"a":[2,40,76,138,171],"complex":[3,48],"macromolecule":[4],"that":[5,17,142],"plays":[6],"central":[7],"roles":[8],"in":[9],"the":[10,34,47,71,82,146,186],"cell.":[11],"While":[12],"it":[13,121],"well":[15,163],"known":[16,77],"its":[18,24,104],"structure":[19,41,112,119],"directly":[21],"related":[22],"to":[23,58,69,110,115,125],"functions,":[25],"understanding":[26,111],"and":[27,78,86,92,106,144,151,170],"predicting":[28],"structures":[30,74],"challenging.":[32],"Assessing":[33],"real":[35],"or":[36],"predictive":[37],"quality":[38,61,68],"of":[39,52,73,148,173],"also":[43],"at":[44,66],"stake":[45],"with":[46],"3D":[49,118],"possible":[50],"conformations":[51],"RNAs.":[53],"Metrics":[54],"have":[55,89],"been":[56,90],"developed":[57,100,136],"measure":[59],"model":[60],"while":[62],"scoring":[63,87,130,152,168],"functions":[64,88,169],"aim":[65],"assigning":[67],"guide":[70],"discrimination":[72],"without":[75],"solved":[79],"reference.":[80],"Throughout":[81],"years,":[83],"many":[84],"metrics":[85,128,150],"developed,":[91],"no":[93],"unique":[94],"assessment":[95,101],"used":[97],"nowadays.":[98],"Each":[99],"method":[102],"has":[103],"specificity":[105],"might":[107],"be":[108,123],"complementary":[109],"quality.":[113],"Therefore,":[114],"evaluate":[116],"predictions,":[120],"would":[122],"important":[124],"calculate":[126],"different":[127],"and/or":[129],"functions.":[131,153],"For":[132],"this":[133,155],"purpose,":[134],"we":[135,157,175],"RNAdvisor,":[137],"comprehensive":[139],"automated":[140],"software":[141],"integrates":[143],"enhances":[145],"accessibility":[147],"existing":[149,166],"In":[154],"paper,":[156],"present":[158],"our":[159],"RNAdvisor":[160],"tool,":[161],"as":[162,164],"state-of-the-art":[165],"metrics,":[167],"set":[172],"benchmarks":[174],"conducted":[176],"for":[177],"evaluating":[178],"them.":[179],"Source":[180],"code":[181],"freely":[183],"available":[184],"on":[185],"EvryRNA":[187],"platform:":[188],"https://evryrna.ibisc.univ-evry.fr.":[189]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
