{"id":"https://openalex.org/W4392112924","doi":"https://doi.org/10.1093/bib/bbae050","title":"A comprehensive computational benchmark for evaluating deep learning-based protein function prediction approaches","display_name":"A comprehensive computational benchmark for evaluating deep learning-based protein function prediction approaches","publication_year":2024,"publication_date":"2024-01-22","ids":{"openalex":"https://openalex.org/W4392112924","doi":"https://doi.org/10.1093/bib/bbae050","pmid":"https://pubmed.ncbi.nlm.nih.gov/38388682"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae050","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae050/56742374/bbae050.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae050/56742374/bbae050.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101589261","display_name":"Wenkang Wang","orcid":"https://orcid.org/0009-0001-9930-5853"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenkang Wang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , 932 South Lushan Road, Yuelu District, Changsha 410083 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 South Lushan Road, Yuelu District, Changsha 410083 , China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092389559","display_name":"Yunyan Shuai","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunyan Shuai","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , 932 South Lushan Road, Yuelu District, Changsha 410083 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 South Lushan Road, Yuelu District, Changsha 410083 , China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100965806","display_name":"Qiurong Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiurong Yang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , 932 South Lushan Road, Yuelu District, Changsha 410083 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 South Lushan Road, Yuelu District, Changsha 410083 , China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032947862","display_name":"Fuhao Zhang","orcid":"https://orcid.org/0000-0002-5339-0714"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fuhao Zhang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , 932 South Lushan Road, Yuelu District, Changsha 410083 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 South Lushan Road, Yuelu District, Changsha 410083 , China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033885404","display_name":"Min Zeng","orcid":"https://orcid.org/0000-0002-1726-0955"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Zeng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , 932 South Lushan Road, Yuelu District, Changsha 410083 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 South Lushan Road, Yuelu District, Changsha 410083 , China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , 932 South Lushan Road, Yuelu District, Changsha 410083 , China"],"raw_orcid":"https://orcid.org/0000-0002-0188-1394","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 South Lushan Road, Yuelu District, Changsha 410083 , China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100719013"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.8662,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.84845171,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"25","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8276349306106567},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7741702795028687},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.5785834789276123},{"id":"https://openalex.org/keywords/pace","display_name":"Pace","score":0.5412994623184204},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.50295490026474},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4990510940551758},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.4432772696018219},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4074312448501587},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3657730221748352}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8276349306106567},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7741702795028687},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.5785834789276123},{"id":"https://openalex.org/C2777526511","wikidata":"https://www.wikidata.org/wiki/Q691543","display_name":"Pace","level":2,"score":0.5412994623184204},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.50295490026474},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4990510940551758},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.4432772696018219},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4074312448501587},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3657730221748352},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae050","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae050/56742374/bbae050.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38388682","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38388682","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10883809","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10883809","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10883809/pdf/bbae050.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae050","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae050/56742374/bbae050.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3328780670","display_name":null,"funder_award_id":"61728211","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4043378463","display_name":null,"funder_award_id":"61832019","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8210156615","display_name":null,"funder_award_id":"61622213","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8215791582","display_name":null,"funder_award_id":"G20190018001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321514","display_name":"Central South University","ror":"https://ror.org/00f1zfq44"},{"id":"https://openalex.org/F4320335769","display_name":"Graduate Research and Innovation Projects of Jiangsu Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4392112924.pdf"},"referenced_works_count":67,"referenced_works":["https://openalex.org/W1810943226","https://openalex.org/W1985086849","https://openalex.org/W1989511016","https://openalex.org/W2012034410","https://openalex.org/W2054878850","https://openalex.org/W2070789802","https://openalex.org/W2079735306","https://openalex.org/W2101291993","https://openalex.org/W2101626488","https://openalex.org/W2103017472","https://openalex.org/W2153929049","https://openalex.org/W2154851992","https://openalex.org/W2167786318","https://openalex.org/W2252523470","https://openalex.org/W2319227129","https://openalex.org/W2472351724","https://openalex.org/W2535702297","https://openalex.org/W2565516711","https://openalex.org/W2586452838","https://openalex.org/W2615066396","https://openalex.org/W2620998958","https://openalex.org/W2807567459","https://openalex.org/W2900629010","https://openalex.org/W2907492528","https://openalex.org/W2919115771","https://openalex.org/W2951282333","https://openalex.org/W2951731136","https://openalex.org/W2964015378","https://openalex.org/W2965778154","https://openalex.org/W2966590054","https://openalex.org/W2989608901","https://openalex.org/W2991321419","https://openalex.org/W3003053789","https://openalex.org/W3104097132","https://openalex.org/W3107527779","https://openalex.org/W3126817587","https://openalex.org/W3136918052","https://openalex.org/W3137270128","https://openalex.org/W3141892660","https://openalex.org/W3143063265","https://openalex.org/W3146944767","https://openalex.org/W3163965514","https://openalex.org/W3164046276","https://openalex.org/W3165795318","https://openalex.org/W3177828909","https://openalex.org/W3179436811","https://openalex.org/W4200166788","https://openalex.org/W4210257598","https://openalex.org/W4220952154","https://openalex.org/W4225687252","https://openalex.org/W4236358448","https://openalex.org/W4297733535","https://openalex.org/W4307698996","https://openalex.org/W4310295335","https://openalex.org/W4312097792","https://openalex.org/W4366163632","https://openalex.org/W4367052125","https://openalex.org/W4382998933","https://openalex.org/W4385245566","https://openalex.org/W6638273328","https://openalex.org/W6664411780","https://openalex.org/W6679775712","https://openalex.org/W6726873649","https://openalex.org/W6739901393","https://openalex.org/W6760385162","https://openalex.org/W6792246581","https://openalex.org/W6847014021"],"related_works":["https://openalex.org/W2386723501","https://openalex.org/W2387879414","https://openalex.org/W2390304029","https://openalex.org/W2354923724","https://openalex.org/W2146830340","https://openalex.org/W2377101853","https://openalex.org/W2362180844","https://openalex.org/W1482441085","https://openalex.org/W2966858528","https://openalex.org/W2151687600"],"abstract_inverted_index":{"Proteins":[0],"play":[1],"an":[2],"important":[3],"role":[4],"in":[5],"life":[6,29],"activities":[7],"and":[8,30,123,134,142,160,202],"are":[9],"the":[10,25,45,52,65,84,103,131,136,162,172,185],"basic":[11],"units":[12],"for":[13,23,34,108,178,189],"performing":[14],"functions.":[15],"Accurately":[16],"annotating":[17],"functions":[18,71],"to":[19,41,67,83,92,101,120,183],"proteins":[20],"is":[21,90],"crucial":[22],"understanding":[24],"intricate":[26],"mechanisms":[27],"of":[28,48,54,61,86,97,105,164,194],"developing":[31],"effective":[32],"treatments":[33],"complex":[35],"diseases.":[36],"Traditional":[37],"biological":[38,62],"experiments":[39],"struggle":[40],"keep":[42],"pace":[43],"with":[44],"growing":[46],"number":[47],"known":[49],"proteins.":[50],"With":[51],"development":[53],"high-throughput":[55],"sequencing":[56],"technology,":[57],"a":[58,94,116,151],"wide":[59],"variety":[60],"data":[63,122,137],"provides":[64],"possibility":[66],"accurately":[68],"predict":[69],"protein":[70],"by":[72],"computational":[73,77,99,126,146],"methods.":[74,127,147],"Consequently,":[75],"many":[76],"methods":[78,100,166],"have":[79],"been":[80],"proposed.":[81],"Due":[82],"diversity":[85],"application":[87,158],"scenarios,":[88,180],"it":[89],"necessary":[91],"conduct":[93],"comprehensive":[95,117,153],"evaluation":[96,154],"these":[98,168,195],"determine":[102],"suitability":[104],"each":[106],"algorithm":[107],"specific":[109,191],"cases.":[110],"In":[111],"this":[112],"study,":[113],"we":[114,140,149,174],"present":[115],"benchmark,":[118],"BeProf,":[119],"process":[121],"evaluate":[124,161],"representative":[125],"We":[128],"first":[129],"collect":[130],"latest":[132],"datasets":[133],"analyze":[135],"characteristics.":[138],"Then,":[139],"investigate":[141],"summarize":[143],"17":[144],"state-of-the-art":[145],"Finally,":[148],"propose":[150],"novel":[152],"metric,":[155],"design":[156],"eight":[157],"scenarios":[159],"performance":[163],"existing":[165],"on":[167,171],"scenarios.":[169],"Based":[170],"evaluation,":[173],"provide":[175],"practical":[176],"recommendations":[177],"different":[179],"enabling":[181],"users":[182],"select":[184],"most":[186],"suitable":[187],"method":[188],"their":[190],"needs.":[192],"All":[193],"servers":[196],"can":[197],"be":[198],"obtained":[199],"from":[200],"https://csuligroup.com/BEPROF":[201],"https://github.com/CSUBioGroup/BEPROF.":[203]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
