{"id":"https://openalex.org/W4392021346","doi":"https://doi.org/10.1093/bib/bbae048","title":"ABAG-docking benchmark: a non-redundant structure benchmark dataset for antibody\u2013antigen computational docking","display_name":"ABAG-docking benchmark: a non-redundant structure benchmark dataset for antibody\u2013antigen computational docking","publication_year":2024,"publication_date":"2024-01-22","ids":{"openalex":"https://openalex.org/W4392021346","doi":"https://doi.org/10.1093/bib/bbae048","pmid":"https://pubmed.ncbi.nlm.nih.gov/38385879"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae048","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae048","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae048/56728892/bbae048.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae048/56728892/bbae048.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080802434","display_name":"Nan Zhao","orcid":"https://orcid.org/0009-0003-3755-8235"},"institutions":[{"id":"https://openalex.org/I78988378","display_name":"Renmin University of China","ror":"https://ror.org/041pakw92","country_code":"CN","type":"education","lineage":["https://openalex.org/I78988378"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Nan Zhao","raw_affiliation_strings":["Institute for Mathematical Sciences, School of Mathematics, Renmin University of China , Beijing , China"],"raw_orcid":"https://orcid.org/0009-0003-3755-8235","affiliations":[{"raw_affiliation_string":"Institute for Mathematical Sciences, School of Mathematics, Renmin University of China , Beijing , China","institution_ids":["https://openalex.org/I78988378"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102500842","display_name":"Bingqing Han","orcid":null},"institutions":[{"id":"https://openalex.org/I78988378","display_name":"Renmin University of China","ror":"https://ror.org/041pakw92","country_code":"CN","type":"education","lineage":["https://openalex.org/I78988378"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bingqing Han","raw_affiliation_strings":["Institute for Mathematical Sciences, School of Mathematics, Renmin University of China , Beijing , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Mathematical Sciences, School of Mathematics, Renmin University of China , Beijing , China","institution_ids":["https://openalex.org/I78988378"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102856219","display_name":"Cuicui Zhao","orcid":"https://orcid.org/0000-0002-7690-807X"},"institutions":[{"id":"https://openalex.org/I78988378","display_name":"Renmin University of China","ror":"https://ror.org/041pakw92","country_code":"CN","type":"education","lineage":["https://openalex.org/I78988378"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cuicui Zhao","raw_affiliation_strings":["Institute for Mathematical Sciences, School of Mathematics, Renmin University of China , Beijing , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Mathematical Sciences, School of Mathematics, Renmin University of China , Beijing , China","institution_ids":["https://openalex.org/I78988378"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019398608","display_name":"Jinbo Xu","orcid":"https://orcid.org/0000-0001-7111-4839"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Jinbo Xu","raw_affiliation_strings":["MoleculeMind Ltd. , Beijing , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MoleculeMind Ltd. , Beijing , China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032915299","display_name":"Xinqi Gong","orcid":"https://orcid.org/0000-0003-2802-6176"},"institutions":[{"id":"https://openalex.org/I4210100255","display_name":"Beijing Academy of Artificial Intelligence","ror":"https://ror.org/016a74861","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210100255"]},{"id":"https://openalex.org/I78988378","display_name":"Renmin University of China","ror":"https://ror.org/041pakw92","country_code":"CN","type":"education","lineage":["https://openalex.org/I78988378"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xinqi Gong","raw_affiliation_strings":["Beijing Academy of Artificial Intelligence , Beijing , China","Institute for Mathematical Sciences, School of Mathematics, Renmin University of China , Beijing , China"],"raw_orcid":"https://orcid.org/0000-0003-2802-6176","affiliations":[{"raw_affiliation_string":"Beijing Academy of Artificial Intelligence , Beijing , China","institution_ids":["https://openalex.org/I4210100255"]},{"raw_affiliation_string":"Institute for Mathematical Sciences, School of Mathematics, Renmin University of China , Beijing , China","institution_ids":["https://openalex.org/I78988378"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5019398608","https://openalex.org/A5032915299"],"corresponding_institution_ids":["https://openalex.org/I4210100255","https://openalex.org/I78988378"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":5.6637,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.96258161,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"25","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.779991626739502},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7646316885948181},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7101643085479736},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.4755679965019226},{"id":"https://openalex.org/keywords/monoclonal-antibody","display_name":"Monoclonal antibody","score":0.4645428955554962},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4342663586139679},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.37874919176101685},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3606051504611969},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32359403371810913},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1509876847267151},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.10283368825912476}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.779991626739502},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7646316885948181},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7101643085479736},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.4755679965019226},{"id":"https://openalex.org/C542903549","wikidata":"https://www.wikidata.org/wiki/Q422248","display_name":"Monoclonal antibody","level":3,"score":0.4645428955554962},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4342663586139679},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.37874919176101685},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3606051504611969},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32359403371810913},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1509876847267151},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.10283368825912476},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000911","descriptor_name":"Antibodies, Monoclonal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000911","descriptor_name":"Antibodies, Monoclonal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000911","descriptor_name":"Antibodies, Monoclonal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000911","descriptor_name":"Antibodies, Monoclonal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000911","descriptor_name":"Antibodies, Monoclonal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D061067","descriptor_name":"Antibodies, Monoclonal, Humanized","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D061067","descriptor_name":"Antibodies, Monoclonal, Humanized","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D061067","descriptor_name":"Antibodies, Monoclonal, Humanized","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D061067","descriptor_name":"Antibodies, Monoclonal, Humanized","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D061067","descriptor_name":"Antibodies, Monoclonal, Humanized","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae048","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae048","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae048/56728892/bbae048.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38385879","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38385879","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10883643","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10883643","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10883643/pdf/bbae048.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae048","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae048","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae048/56728892/bbae048.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.5899999737739563,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G108295615","display_name":null,"funder_award_id":"31670725","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322499","display_name":"Renmin University of China","ror":"https://ror.org/041pakw92"},{"id":"https://openalex.org/F4320336066","display_name":"Beijing Advanced Innovation Center for Structural Biology, Tsinghua University","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4392021346.pdf"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1030883578","https://openalex.org/W1982679430","https://openalex.org/W2019691413","https://openalex.org/W2036808217","https://openalex.org/W2050526879","https://openalex.org/W2055043387","https://openalex.org/W2099367604","https://openalex.org/W2099907934","https://openalex.org/W2110505462","https://openalex.org/W2118514515","https://openalex.org/W2133712572","https://openalex.org/W2151460035","https://openalex.org/W2154019529","https://openalex.org/W2158412800","https://openalex.org/W2158714788","https://openalex.org/W2170564629","https://openalex.org/W2171049846","https://openalex.org/W2304188484","https://openalex.org/W2508425869","https://openalex.org/W2544136853","https://openalex.org/W2561826764","https://openalex.org/W2572080171","https://openalex.org/W2615136515","https://openalex.org/W2743395618","https://openalex.org/W2778809918","https://openalex.org/W2915344963","https://openalex.org/W2983012520","https://openalex.org/W2992871640","https://openalex.org/W3015438624","https://openalex.org/W3104537585","https://openalex.org/W3128461460","https://openalex.org/W3177828909","https://openalex.org/W3202105508","https://openalex.org/W4200461926","https://openalex.org/W4362510910","https://openalex.org/W4390245367","https://openalex.org/W6645904433","https://openalex.org/W6652611156","https://openalex.org/W6674411019","https://openalex.org/W6685213996","https://openalex.org/W6737906011","https://openalex.org/W6769770359","https://openalex.org/W6775389608","https://openalex.org/W6782986700","https://openalex.org/W6785633964","https://openalex.org/W6803919185","https://openalex.org/W7075630220"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W2745001401","https://openalex.org/W4321353415","https://openalex.org/W2130974462","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W972276598","https://openalex.org/W2087343574","https://openalex.org/W4246352526","https://openalex.org/W1999686187"],"abstract_inverted_index":{"Accurate":[0],"prediction":[1,157],"of":[2,21,45,50,71,103,134,188],"antibody-antigen":[3,34,51,189,204],"complex":[4,156],"structures":[5],"is":[6,212],"pivotal":[7],"in":[8,185],"drug":[9],"discovery,":[10],"vaccine":[11],"design":[12],"and":[13,16,25,43,63,92,98,117,139,163,167,180,197,202],"disease":[14],"treatment":[15],"can":[17],"facilitate":[18],"the":[19,33,41,55,101,121,132,136,186],"development":[20],"more":[22,195],"effective":[23,198],"therapies":[24],"diagnostics.":[26],"In":[27],"this":[28,169],"work,":[29],"we":[30,39,81,128],"first":[31],"review":[32],"docking":[35,59,182],"(ABAG-docking)":[36],"datasets.":[37],"Then,":[38],"present":[40],"creation":[42],"characterization":[44],"a":[46,68,141,175],"comprehensive":[47],"benchmark":[48,137,172,210],"dataset":[49,56,107,138,211],"complexes.":[52,205],"We":[53,152],"categorize":[54],"based":[57],"on":[58,131],"difficulty,":[60],"interface":[61],"properties":[62],"structural":[64],"characteristics,":[65],"to":[66,123,146,150,193],"provide":[67,129],"diverse":[69,109],"set":[70],"cases":[72,91],"for":[73,143,165,178,200],"rigorous":[74],"evaluation.":[75],"Compared":[76],"with":[77],"Docking":[78],"Benchmark":[79],"5.5,":[80],"have":[82],"added":[83],"112":[84],"cases,":[85,97,110],"including":[86,111,159],"14":[87],"single-domain":[88],"antibody":[89,95],"(sdAb)":[90],"98":[93],"monoclonal":[94],"(mAb)":[96],"also":[99,153],"increased":[100],"proportion":[102],"Difficult":[104],"cases.":[105],"Our":[106],"contains":[108],"human/humanized":[112],"antibodies,":[113],"sdAbs,":[114],"rodent":[115],"antibodies":[116],"other":[118],"types,":[119],"opening":[120],"door":[122],"better":[124],"algorithm":[125],"development.":[126],"Furthermore,":[127],"details":[130],"process":[133],"building":[135],"introduce":[140],"pipeline":[142],"periodic":[144],"updates":[145],"keep":[147],"it":[148],"up":[149],"date.":[151],"utilize":[154],"multiple":[155],"methods":[158,184],"ZDOCK,":[160],"ClusPro,":[161],"HDOCK":[162],"AlphaFold-Multimer":[164],"testing":[166],"analyzing":[168],"dataset.":[170],"This":[171],"serves":[173],"as":[174],"valuable":[176],"resource":[177],"evaluating":[179],"advancing":[181],"computational":[183],"analysis":[187],"interaction,":[190],"enabling":[191],"researchers":[192],"develop":[194],"accurate":[196],"tools":[199],"predicting":[201],"designing":[203],"The":[206],"non-redundant":[207],"ABAG-docking":[208],"structure":[209],"available":[213],"at":[214],"https://github.com/Zhaonan99/Antibody-antigen-complex-structure-benchmark-dataset.":[215]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
