{"id":"https://openalex.org/W4392874559","doi":"https://doi.org/10.1093/bib/bbae029","title":"SuperCUT, an unsupervised multimodal image registration with deep learning for biomedical microscopy","display_name":"SuperCUT, an unsupervised multimodal image registration with deep learning for biomedical microscopy","publication_year":2024,"publication_date":"2024-01-22","ids":{"openalex":"https://openalex.org/W4392874559","doi":"https://doi.org/10.1093/bib/bbae029","pmid":"https://pubmed.ncbi.nlm.nih.gov/38483256"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae029","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae029/56965274/bbae029.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae029/56965274/bbae029.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020956098","display_name":"Istv\u00e1n Grexa","orcid":"https://orcid.org/0000-0002-0548-7706"},"institutions":[{"id":"https://openalex.org/I227486990","display_name":"University of Szeged","ror":"https://ror.org/01pnej532","country_code":"HU","type":"education","lineage":["https://openalex.org/I227486990"]},{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Istvan Grexa","raw_affiliation_strings":["Doctoral School of Interdisciplinary Medicine, University of Szeged , Kor\u00e1nyi fasor 10, Szeged 6720 Hungary","Synthetic and Systems Biology Unit, Biological Research Centre (BRC) , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726"],"affiliations":[{"raw_affiliation_string":"Doctoral School of Interdisciplinary Medicine, University of Szeged , Kor\u00e1nyi fasor 10, Szeged 6720 Hungary","institution_ids":["https://openalex.org/I227486990"]},{"raw_affiliation_string":"Synthetic and Systems Biology Unit, Biological Research Centre (BRC) , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726","institution_ids":["https://openalex.org/I2800351701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113144378","display_name":"Zsanett Zs\u00f3fia Iv\u00e1n","orcid":"https://orcid.org/0000-0002-2800-990X"},"institutions":[{"id":"https://openalex.org/I227486990","display_name":"University of Szeged","ror":"https://ror.org/01pnej532","country_code":"HU","type":"education","lineage":["https://openalex.org/I227486990"]},{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Zsanett Zs\u00f3fia Iv\u00e1n","raw_affiliation_strings":["Doctoral School of Biology, University of Szeged , K\u00f6z\u00e9p fasor 52, Szeged 6726 Hungary","Synthetic and Systems Biology Unit, Biological Research Centre (BRC) , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726"],"affiliations":[{"raw_affiliation_string":"Doctoral School of Biology, University of Szeged , K\u00f6z\u00e9p fasor 52, Szeged 6726 Hungary","institution_ids":["https://openalex.org/I227486990"]},{"raw_affiliation_string":"Synthetic and Systems Biology Unit, Biological Research Centre (BRC) , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726","institution_ids":["https://openalex.org/I2800351701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089306290","display_name":"Ede Migh","orcid":"https://orcid.org/0000-0002-8312-6463"},"institutions":[{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Ede Migh","raw_affiliation_strings":["Synthetic and Systems Biology Unit, Biological Research Centre (BRC) , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726"],"affiliations":[{"raw_affiliation_string":"Synthetic and Systems Biology Unit, Biological Research Centre (BRC) , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726","institution_ids":["https://openalex.org/I2800351701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103157453","display_name":"Ferenc Kov\u00e1cs","orcid":"https://orcid.org/0000-0003-4512-4448"},"institutions":[{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Ferenc Kov\u00e1cs","raw_affiliation_strings":["Single-Cell Technologies Ltd , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726 , Hungary","Synthetic and Systems Biology Unit, Biological Research Centre (BRC) , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726"],"affiliations":[{"raw_affiliation_string":"Single-Cell Technologies Ltd , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726 , Hungary","institution_ids":[]},{"raw_affiliation_string":"Synthetic and Systems Biology Unit, Biological Research Centre (BRC) , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726","institution_ids":["https://openalex.org/I2800351701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020733835","display_name":"Hella Anna Bolck","orcid":"https://orcid.org/0000-0001-5157-0490"},"institutions":[{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Hella A Bolck","raw_affiliation_strings":["Department of Pathology and Molecular Pathology, University Hospital Z\u00fcrich , Z\u00fcrich, Schmelzbergstrasse 12 8091 , Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Pathology and Molecular Pathology, University Hospital Z\u00fcrich , Z\u00fcrich, Schmelzbergstrasse 12 8091 , Switzerland","institution_ids":["https://openalex.org/I4210100468"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100652151","display_name":"Xiang Zheng","orcid":null},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Xiang Zheng","raw_affiliation_strings":["Novo Nordisk Foundation Center for Protein Research , Faculty of Health and Medical Sciences, , Copenhagen, Tuborg Havnevej 19 2900 Hellerup , Denmark","University of Copenhagen , Faculty of Health and Medical Sciences, , Copenhagen, Tuborg Havnevej 19 2900 Hellerup , Denmark","Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Tuborg Havnevej 19 2900 Hellerup, Denmark"],"affiliations":[{"raw_affiliation_string":"Novo Nordisk Foundation Center for Protein Research , Faculty of Health and Medical Sciences, , Copenhagen, Tuborg Havnevej 19 2900 Hellerup , Denmark","institution_ids":["https://openalex.org/I2801134892"]},{"raw_affiliation_string":"University of Copenhagen , Faculty of Health and Medical Sciences, , Copenhagen, Tuborg Havnevej 19 2900 Hellerup , Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Tuborg Havnevej 19 2900 Hellerup, Denmark","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I124055696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044786147","display_name":"Andreas Mund","orcid":"https://orcid.org/0000-0002-7843-5341"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Andreas Mund","raw_affiliation_strings":["Novo Nordisk Foundation Center for Protein Research , Faculty of Health and Medical Sciences, , Copenhagen, Tuborg Havnevej 19 2900 Hellerup , Denmark","University of Copenhagen , Faculty of Health and Medical Sciences, , Copenhagen, Tuborg Havnevej 19 2900 Hellerup , Denmark","Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Tuborg Havnevej 19 2900 Hellerup, Denmark"],"affiliations":[{"raw_affiliation_string":"Novo Nordisk Foundation Center for Protein Research , Faculty of Health and Medical Sciences, , Copenhagen, Tuborg Havnevej 19 2900 Hellerup , Denmark","institution_ids":["https://openalex.org/I2801134892"]},{"raw_affiliation_string":"University of Copenhagen , Faculty of Health and Medical Sciences, , Copenhagen, Tuborg Havnevej 19 2900 Hellerup , Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Tuborg Havnevej 19 2900 Hellerup, Denmark","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I124055696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063459595","display_name":"Nikita Moshkov","orcid":"https://orcid.org/0000-0002-5823-4884"},"institutions":[{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Nikita Moshkov","raw_affiliation_strings":["Synthetic and Systems Biology Unit, Biological Research Centre (BRC) , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726"],"affiliations":[{"raw_affiliation_string":"Synthetic and Systems Biology Unit, Biological Research Centre (BRC) , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726","institution_ids":["https://openalex.org/I2800351701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083108757","display_name":"Vivien Micz\u00e1n","orcid":"https://orcid.org/0000-0003-0457-4899"},"institutions":[{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Vivien Micz\u00e1n","raw_affiliation_strings":["Synthetic and Systems Biology Unit, Biological Research Centre (BRC) , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726"],"affiliations":[{"raw_affiliation_string":"Synthetic and Systems Biology Unit, Biological Research Centre (BRC) , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726","institution_ids":["https://openalex.org/I2800351701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040421207","display_name":"Kriszti\u00e1n Ko\u00f3s","orcid":"https://orcid.org/0000-0003-3136-8978"},"institutions":[{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Krisztian Koos","raw_affiliation_strings":["Synthetic and Systems Biology Unit, Biological Research Centre (BRC) , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726"],"affiliations":[{"raw_affiliation_string":"Synthetic and Systems Biology Unit, Biological Research Centre (BRC) , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726","institution_ids":["https://openalex.org/I2800351701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056154163","display_name":"P\u00e9ter Horv\u00e1th","orcid":"https://orcid.org/0000-0002-4492-1798"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["DE","FI","HU"],"is_corresponding":true,"raw_author_name":"Peter Horvath","raw_affiliation_strings":["Institute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Science, University of Helsinki , Tukholmankatu 8, Helsinki 00014 , Finland","Institute of AI for Health, Helmholtz Zentrum M\u00fcnchen , Ingolst\u00e4dter Landstra\u00dfe 1, 85764 Oberschlei\u00dfheim Neuherberg , Germany","Single-Cell Technologies Ltd , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726 , Hungary","Synthetic and Systems Biology Unit, Biological Research Centre (BRC) , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726"],"affiliations":[{"raw_affiliation_string":"Institute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Science, University of Helsinki , Tukholmankatu 8, Helsinki 00014 , Finland","institution_ids":["https://openalex.org/I4210133586","https://openalex.org/I133731052"]},{"raw_affiliation_string":"Institute of AI for Health, Helmholtz Zentrum M\u00fcnchen , Ingolst\u00e4dter Landstra\u00dfe 1, 85764 Oberschlei\u00dfheim Neuherberg , Germany","institution_ids":["https://openalex.org/I3018134672"]},{"raw_affiliation_string":"Single-Cell Technologies Ltd , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726 , Hungary","institution_ids":[]},{"raw_affiliation_string":"Synthetic and Systems Biology Unit, Biological Research Centre (BRC) , Temesv\u00e1ri k\u00f6r\u00fat 62, Szeged 6726","institution_ids":["https://openalex.org/I2800351701"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5056154163"],"corresponding_institution_ids":["https://openalex.org/I133731052","https://openalex.org/I2800351701","https://openalex.org/I3018134672","https://openalex.org/I4210133586"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.4938,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.60364573,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"25","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6638034582138062},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5892598628997803},{"id":"https://openalex.org/keywords/image-registration","display_name":"Image registration","score":0.527013897895813},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5225241184234619},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.4497888684272766},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.44027677178382874},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.402072012424469},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3302684724330902},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1290217936038971},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.08788925409317017}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6638034582138062},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5892598628997803},{"id":"https://openalex.org/C166704113","wikidata":"https://www.wikidata.org/wiki/Q861092","display_name":"Image registration","level":3,"score":0.527013897895813},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5225241184234619},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.4497888684272766},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.44027677178382874},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.402072012424469},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3302684724330902},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1290217936038971},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.08788925409317017}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bib/bbae029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae029","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae029/56965274/bbae029.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38483256","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38483256","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10938542","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10938542","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10938542/pdf/bbae029.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/9d1530ed-09da-46af-a5dd-83cf1a5c8e2f","is_oa":true,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/9d1530ed-09da-46af-a5dd-83cf1a5c8e2f","pdf_url":"https://curis.ku.dk/ws/files/408482945/bbae029.pdf","source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Grexa , I , Iv\u00e1n , Z Z , Migh , E , Kov\u00e1cs , F , Bolck , H A , Zheng , X , Mund , A , Moshkov , N , Micz\u00e1n , V , Koos , K & Horvath , P 2024 , ' SuperCUT, an unsupervised multimodal image registration with deep learning for biomedical microscopy ' , Briefings in Bioinformatics , vol. 25 , no. 2 , bbae029 . https://doi.org/10.1093/bib/bbae029","raw_type":"article"},{"id":"pmh:oai:real.mtak.hu:214369","is_oa":true,"landing_page_url":null,"pdf_url":"https://real.mtak.hu/214369/1/GrexaI_SuperCUT.pdf","source":{"id":"https://openalex.org/S4306400081","display_name":"Repository of the Academy's Library (Library of the Hungarian Academy of Sciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210140733","host_organization_name":"Library and Information Centre of the Hungarian Academy of Sciences","host_organization_lineage":["https://openalex.org/I4210140733"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:push-zb.helmholtz-munich.de:70251","is_oa":true,"landing_page_url":"https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70251","pdf_url":null,"source":{"id":"https://openalex.org/S7407055352","display_name":"PuSH - Publication Server of Helmholtz Zentrum M\u00fcnchen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief. Bioinform. 25:bbae029 (2024)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae029","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae029/56965274/bbae029.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","score":0.6100000143051147,"display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G1348732877","display_name":null,"funder_award_id":"TKP2021-EGA","funder_id":"https://openalex.org/F4320321994","funder_display_name":"Hungarian Scientific Research Fund"},{"id":"https://openalex.org/G1841523747","display_name":null,"funder_award_id":"N2-0136","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G3948645045","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G4282887365","display_name":null,"funder_award_id":"NNF14CC0001","funder_id":"https://openalex.org/F4320322436","funder_display_name":"Novo Nordisk"},{"id":"https://openalex.org/G5568672882","display_name":null,"funder_award_id":"NNF15CC0001","funder_id":"https://openalex.org/F4320322436","funder_display_name":"Novo Nordisk"},{"id":"https://openalex.org/G6445383465","display_name":null,"funder_award_id":"NNF15CC0001","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G6662978750","display_name":null,"funder_award_id":"NNF14CC0001","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G7031468586","display_name":null,"funder_award_id":"NNF14CC000","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G8112475816","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G996161988","display_name":null,"funder_award_id":"14CC0001","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"}],"funders":[{"id":"https://openalex.org/F4320321994","display_name":"Hungarian Scientific Research Fund","ror":"https://ror.org/00v349e63"},{"id":"https://openalex.org/F4320322436","display_name":"Novo Nordisk","ror":"https://ror.org/0435rc536"},{"id":"https://openalex.org/F4320322554","display_name":"Javna Agencija za Raziskovalno Dejavnost RS","ror":"https://ror.org/059bp8k51"},{"id":"https://openalex.org/F4320324261","display_name":"National Research University Higher School of Economics","ror":"https://ror.org/055f7t516"},{"id":"https://openalex.org/F4320325957","display_name":"Novo Nordisk Fonden","ror":"https://ror.org/04txyc737"},{"id":"https://openalex.org/F4320329149","display_name":"Szegedi Tudom\u00e1nyegyetem","ror":"https://ror.org/01pnej532"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320333873","display_name":"Helsinki Institute of Life Science, Helsingin Yliopisto","ror":null},{"id":"https://openalex.org/F4320335908","display_name":"Nemzeti Kutat\u00e1si, Fejleszt\u00e9si \u00e9s Innovaci\u00f3s Alap","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4392874559.pdf"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1901129140","https://openalex.org/W1973603991","https://openalex.org/W1975214603","https://openalex.org/W2005833192","https://openalex.org/W2124386111","https://openalex.org/W2131372145","https://openalex.org/W2216267953","https://openalex.org/W2562637781","https://openalex.org/W2783079483","https://openalex.org/W2922479016","https://openalex.org/W2990138404","https://openalex.org/W2991106430","https://openalex.org/W3033696290","https://openalex.org/W3044548252","https://openalex.org/W3166568332","https://openalex.org/W3177525997","https://openalex.org/W3207566749","https://openalex.org/W4205437806","https://openalex.org/W4205468380","https://openalex.org/W4243493583","https://openalex.org/W4280598306","https://openalex.org/W4283032464","https://openalex.org/W4310092560","https://openalex.org/W4322766424","https://openalex.org/W4385283815","https://openalex.org/W4387494379","https://openalex.org/W4401946675","https://openalex.org/W6639824700","https://openalex.org/W6779739962","https://openalex.org/W6824780776"],"related_works":["https://openalex.org/W4375867731","https://openalex.org/W2611989081","https://openalex.org/W2731899572","https://openalex.org/W4230611425","https://openalex.org/W4294635752","https://openalex.org/W4304166257","https://openalex.org/W4383066092","https://openalex.org/W3215138031","https://openalex.org/W2804383999","https://openalex.org/W2802049774"],"abstract_inverted_index":{"Numerous":[0],"imaging":[1],"techniques":[2],"are":[3],"available":[4],"for":[5,46,87],"observing":[6],"and":[7,11,30,109],"interrogating":[8],"biological":[9,117],"samples,":[10],"several":[12],"of":[13,23,33,41,99,116,128],"them":[14],"can":[15],"be":[16],"used":[17],"consecutively":[18],"to":[19,137,142],"enable":[20],"correlative":[21,48],"analysis":[22,49],"different":[24,120],"image":[25,89,107,139],"modalities":[26],"with":[27,59,132],"varying":[28],"resolutions":[29],"the":[31,47,100,104],"inclusion":[32],"structural":[34],"or":[35],"molecular":[36],"information.":[37],"Achieving":[38],"accurate":[39],"registration":[40,66,90,108,140],"multimodal":[42,88],"images":[43],"is":[44,75],"essential":[45],"process,":[50],"but":[51],"it":[52],"remains":[53],"a":[54,83,96],"challenging":[55],"computer":[56],"vision":[57],"task":[58],"no":[60],"widely":[61],"accepted":[62],"solution.":[63],"Moreover,":[64],"supervised":[65,143],"methods":[67,112,144],"require":[68,150],"annotated":[69],"data":[70],"produced":[71],"by":[72],"experts,":[73],"which":[74],"limited.":[76],"To":[77],"address":[78],"this":[79],"challenge,":[80],"we":[81],"propose":[82],"general":[84],"unsupervised":[85,134],"pipeline":[86,102],"using":[91],"deep":[92],"learning.":[93],"We":[94,123],"provide":[95],"comprehensive":[97],"evaluation":[98],"proposed":[101],"versus":[103],"current":[105],"state-of-the-art":[106],"style":[110,126],"transfer":[111,127],"on":[113],"four":[114],"types":[115],"problems":[118],"utilizing":[119],"microscopy":[121],"modalities.":[122],"found":[124],"that":[125],"modality":[129],"domains":[130],"paired":[131],"fully":[133],"training":[135],"leads":[136],"comparable":[138],"accuracy":[141],"and,":[145],"most":[146],"importantly,":[147],"does":[148],"not":[149],"human":[151],"intervention.":[152]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}