{"id":"https://openalex.org/W4391282334","doi":"https://doi.org/10.1093/bib/bbae005","title":"Multi-modal features-based human-herpesvirus protein\u2013protein interaction prediction by using LightGBM","display_name":"Multi-modal features-based human-herpesvirus protein\u2013protein interaction prediction by using LightGBM","publication_year":2024,"publication_date":"2024-01-22","ids":{"openalex":"https://openalex.org/W4391282334","doi":"https://doi.org/10.1093/bib/bbae005","pmid":"https://pubmed.ncbi.nlm.nih.gov/38279649"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae005","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae005/56428122/bbae005.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae005/56428122/bbae005.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101479635","display_name":"Xiaodi Yang","orcid":"https://orcid.org/0000-0002-3229-5865"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210130930","display_name":"Peking University First Hospital","ror":"https://ror.org/02z1vqm45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210130930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaodi Yang","raw_affiliation_strings":["Department of Hematology, Peking University First Hospital , Beijing , China"],"raw_orcid":"https://orcid.org/0000-0002-3229-5865","affiliations":[{"raw_affiliation_string":"Department of Hematology, Peking University First Hospital , Beijing , China","institution_ids":["https://openalex.org/I4210130930","https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076755077","display_name":"Stefan Wuchty","orcid":"https://orcid.org/0000-0001-8916-6522"},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]},{"id":"https://openalex.org/I4210157065","display_name":"Sylvester Comprehensive Cancer Center","ror":"https://ror.org/0552r4b12","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I145608581","https://openalex.org/I4210101935","https://openalex.org/I4210157065"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stefan Wuchty","raw_affiliation_strings":["Department of Biology, University of Miami , Miami FL, 33146 , USA","Department of Computer Science, University of Miami , Miami FL, 33146 , USA","Institute of Data Science and Computation, University of Miami , Miami, FL 33146 , USA","Sylvester Comprehensive Cancer Center, University of Miami , Miami, FL 33136 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Miami , Miami FL, 33146 , USA","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Department of Computer Science, University of Miami , Miami FL, 33146 , USA","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Institute of Data Science and Computation, University of Miami , Miami, FL 33146 , USA","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Sylvester Comprehensive Cancer Center, University of Miami , Miami, FL 33136 , USA","institution_ids":["https://openalex.org/I4210157065","https://openalex.org/I145608581"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109542021","display_name":"Zeyin Liang","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210130930","display_name":"Peking University First Hospital","ror":"https://ror.org/02z1vqm45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210130930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zeyin Liang","raw_affiliation_strings":["Department of Hematology, Peking University First Hospital , Beijing , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Hematology, Peking University First Hospital , Beijing , China","institution_ids":["https://openalex.org/I4210130930","https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000590027","display_name":"Ji Li","orcid":"https://orcid.org/0000-0002-6632-3422"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210130930","display_name":"Peking University First Hospital","ror":"https://ror.org/02z1vqm45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210130930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Ji","raw_affiliation_strings":["Department of Hematology, Peking University First Hospital , Beijing , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Hematology, Peking University First Hospital , Beijing , China","institution_ids":["https://openalex.org/I4210130930","https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100643444","display_name":"Bingjie Wang","orcid":"https://orcid.org/0000-0003-4426-5863"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210130930","display_name":"Peking University First Hospital","ror":"https://ror.org/02z1vqm45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210130930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bingjie Wang","raw_affiliation_strings":["Department of Hematology, Peking University First Hospital , Beijing , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Hematology, Peking University First Hospital , Beijing , China","institution_ids":["https://openalex.org/I4210130930","https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112268634","display_name":"Jialin Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210130930","display_name":"Peking University First Hospital","ror":"https://ror.org/02z1vqm45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210130930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jialin Zhu","raw_affiliation_strings":["Department of Hematology, Peking University First Hospital , Beijing , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Hematology, Peking University First Hospital , Beijing , China","institution_ids":["https://openalex.org/I4210130930","https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031348514","display_name":"Ziding Zhang","orcid":"https://orcid.org/0000-0002-9296-571X"},"institutions":[{"id":"https://openalex.org/I2802239252","display_name":"Sinovac Biotech","ror":"https://ror.org/057f25d66","country_code":"CN","type":"company","lineage":["https://openalex.org/I2802239252"]},{"id":"https://openalex.org/I52158045","display_name":"China Agricultural University","ror":"https://ror.org/04v3ywz14","country_code":"CN","type":"education","lineage":["https://openalex.org/I52158045"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ziding Zhang","raw_affiliation_strings":["China Agricultural University , College of Biological Sciences, , Beijing 100193 , China","State Key Laboratory of Animal Biotech Breeding , College of Biological Sciences, , Beijing 100193 , China","State Key Laboratory of Animal Biotech Breeding, College of Biological Sciences, China Agricultural University, Beijing 100193, China"],"raw_orcid":"https://orcid.org/0000-0002-9296-571X","affiliations":[{"raw_affiliation_string":"China Agricultural University , College of Biological Sciences, , Beijing 100193 , China","institution_ids":["https://openalex.org/I52158045"]},{"raw_affiliation_string":"State Key Laboratory of Animal Biotech Breeding , College of Biological Sciences, , Beijing 100193 , China","institution_ids":["https://openalex.org/I2802239252"]},{"raw_affiliation_string":"State Key Laboratory of Animal Biotech Breeding, College of Biological Sciences, China Agricultural University, Beijing 100193, China","institution_ids":["https://openalex.org/I52158045"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102419945","display_name":"Yujun Dong","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210130930","display_name":"Peking University First Hospital","ror":"https://ror.org/02z1vqm45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210130930"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yujun Dong","raw_affiliation_strings":["Department of Hematology, Peking University First Hospital , Beijing , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Hematology, Peking University First Hospital , Beijing , China","institution_ids":["https://openalex.org/I4210130930","https://openalex.org/I20231570"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5031348514","https://openalex.org/A5102419945"],"corresponding_institution_ids":["https://openalex.org/I20231570","https://openalex.org/I2802239252","https://openalex.org/I4210130930","https://openalex.org/I52158045"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":3.1467,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.91911941,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"25","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7610635757446289},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.61619633436203},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.607925295829773},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6033344268798828},{"id":"https://openalex.org/keywords/modal","display_name":"Modal","score":0.5772789716720581},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5027084350585938},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4713926911354065},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.43630748987197876},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.32274359464645386},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09861359000205994}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7610635757446289},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.61619633436203},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.607925295829773},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6033344268798828},{"id":"https://openalex.org/C71139939","wikidata":"https://www.wikidata.org/wiki/Q910194","display_name":"Modal","level":2,"score":0.5772789716720581},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5027084350585938},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4713926911354065},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.43630748987197876},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.32274359464645386},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09861359000205994},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C188027245","wikidata":"https://www.wikidata.org/wiki/Q750446","display_name":"Polymer chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003587","descriptor_name":"Cytomegalovirus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003587","descriptor_name":"Cytomegalovirus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003587","descriptor_name":"Cytomegalovirus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003587","descriptor_name":"Cytomegalovirus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae005","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae005/56428122/bbae005.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38279649","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38279649","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10818167","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10818167","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10818167/pdf/bbae005.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae005","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbae005/56428122/bbae005.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6299999952316284,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G8922444948","display_name":null,"funder_award_id":"32270703","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320317365","display_name":"Peking University First Hospital","ror":"https://ror.org/02z1vqm45"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324787","display_name":"Peking University","ror":"https://ror.org/02v51f717"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4391282334.pdf"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W1501531009","https://openalex.org/W1678356000","https://openalex.org/W1993059782","https://openalex.org/W2008840001","https://openalex.org/W2012441269","https://openalex.org/W2062725722","https://openalex.org/W2072024663","https://openalex.org/W2085540051","https://openalex.org/W2088422296","https://openalex.org/W2116988471","https://openalex.org/W2131744502","https://openalex.org/W2142485337","https://openalex.org/W2161922860","https://openalex.org/W2164813401","https://openalex.org/W2168637722","https://openalex.org/W2170747616","https://openalex.org/W2272509401","https://openalex.org/W2465613542","https://openalex.org/W2581818779","https://openalex.org/W2586233372","https://openalex.org/W2791639213","https://openalex.org/W2791796577","https://openalex.org/W2899105530","https://openalex.org/W2910154923","https://openalex.org/W2950595506","https://openalex.org/W2969876539","https://openalex.org/W2970491619","https://openalex.org/W2997036293","https://openalex.org/W2998220730","https://openalex.org/W3008784427","https://openalex.org/W3093053585","https://openalex.org/W3093517553","https://openalex.org/W3111142749","https://openalex.org/W3121391924","https://openalex.org/W3134084134","https://openalex.org/W3134490799","https://openalex.org/W3155878711","https://openalex.org/W3174633785","https://openalex.org/W3174714560","https://openalex.org/W3177828909","https://openalex.org/W3185942550","https://openalex.org/W3212342036","https://openalex.org/W4223986248","https://openalex.org/W4226213429","https://openalex.org/W4280576475","https://openalex.org/W4280652278","https://openalex.org/W4283589831","https://openalex.org/W4299573175","https://openalex.org/W4307425304","https://openalex.org/W4309506674","https://openalex.org/W4317703013","https://openalex.org/W4318071656","https://openalex.org/W4327550249","https://openalex.org/W4379054351","https://openalex.org/W4385638394","https://openalex.org/W4387772748","https://openalex.org/W6606906144","https://openalex.org/W6679775712","https://openalex.org/W6745609711","https://openalex.org/W6809966343"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2000169967","https://openalex.org/W2112883198"],"abstract_inverted_index":{"The":[0,174],"identification":[1],"of":[2,18,44,87,167,176],"human-herpesvirus":[3,51,68,146],"protein-protein":[4],"interactions":[5,169],"(PPIs)":[6],"is":[7,53,179],"an":[8],"essential":[9],"and":[10,75,83,89,100,123],"important":[11],"entry":[12],"point":[13],"to":[14,49,66,79,110],"understand":[15],"the":[16,42],"mechanisms":[17],"viral":[19],"infection,":[20],"especially":[21],"in":[22],"malignant":[23],"tumor":[24],"patients":[25],"with":[26],"common":[27],"herpesvirus":[28,172],"infection.":[29],"While":[30],"natural":[31],"language":[32],"processing":[33],"(NLP)-based":[34],"embedding":[35,46,61,77],"techniques":[36],"have":[37],"emerged":[38],"as":[39],"powerful":[40],"approaches,":[41],"application":[43],"multi-modal":[45,60,164],"feature":[47,62,118],"fusion":[48,165],"predict":[50,67,154],"PPIs":[52],"still":[54],"limited.":[55],"Here,":[56],"we":[57,72,104,137],"established":[58],"a":[59,133],"fusion-based":[63],"LightGBM":[64,94],"method":[65,160,178],"PPIs.":[69],"In":[70,132],"particular,":[71],"applied":[73],"document":[74],"graph":[76],"approaches":[78],"represent":[80],"sequence,":[81],"network":[82],"function":[84],"modal":[85],"features":[86,166],"human":[88],"herpesviral":[90],"proteins.":[91],"Training":[92],"our":[93,97,114,140,159,177],"models":[95],"through":[96],"compiled":[98],"non-rigorous":[99],"rigorous":[101],"benchmarking":[102,130],"datasets,":[103],"obtained":[105],"significantly":[106],"better":[107],"performance":[108],"compared":[109],"individual-modal":[111],"features.":[112],"Furthermore,":[113],"model":[115,141],"outperformed":[116],"traditional":[117],"encodings-based":[119],"machine":[120],"learning":[121,135],"methods":[122,127],"state-of-the-art":[124],"deep":[125],"learning-based":[126],"using":[128],"various":[129,171],"datasets.":[131],"transfer":[134],"step,":[136],"show":[138],"that":[139,142,158],"was":[143],"trained":[144],"on":[145],"PPI":[147],"dataset":[148],"without":[149],"cytomegalovirus":[150],"data":[151],"can":[152,161],"reliably":[153],"human-cytomegalovirus":[155],"PPIs,":[156],"indicating":[157],"comprehensively":[162],"capture":[163],"protein":[168],"across":[170],"subtypes.":[173],"implementation":[175],"available":[180],"at":[181],"https://github.com/XiaodiYangpku/MultimodalPPI/.":[182]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":11}],"updated_date":"2026-05-27T09:02:27.158192","created_date":"2025-10-10T00:00:00"}
