{"id":"https://openalex.org/W4391144770","doi":"https://doi.org/10.1093/bib/bbad519","title":"Prediction of cancer driver genes and mutations: the potential of integrative computational frameworks","display_name":"Prediction of cancer driver genes and mutations: the potential of integrative computational frameworks","publication_year":2024,"publication_date":"2024-01-22","ids":{"openalex":"https://openalex.org/W4391144770","doi":"https://doi.org/10.1093/bib/bbad519","pmid":"https://pubmed.ncbi.nlm.nih.gov/38261338"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad519","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad519","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbad519/56326037/bbad519.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/2/bbad519/56326037/bbad519.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057258895","display_name":"Mona Nourbakhsh","orcid":"https://orcid.org/0000-0002-9203-080X"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Mona Nourbakhsh","raw_affiliation_strings":["Cancer Systems Biology , Section for Bioinformatics, Department of Health Technology, , 2800 Lyngby , Denmark","Technical University of Denmark , Section for Bioinformatics, Department of Health Technology, , 2800 Lyngby , Denmark","Cancer Systems Biology, Section for Bioinformatics, Department of Health Technology, Technical University of Denmark, 2800 Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Cancer Systems Biology , Section for Bioinformatics, Department of Health Technology, , 2800 Lyngby , Denmark","institution_ids":["https://openalex.org/I96673099"]},{"raw_affiliation_string":"Technical University of Denmark , Section for Bioinformatics, Department of Health Technology, , 2800 Lyngby , Denmark","institution_ids":["https://openalex.org/I96673099"]},{"raw_affiliation_string":"Cancer Systems Biology, Section for Bioinformatics, Department of Health Technology, Technical University of Denmark, 2800 Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002199962","display_name":"Kristine B. Degn","orcid":null},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Kristine Degn","raw_affiliation_strings":["Cancer Systems Biology , Section for Bioinformatics, Department of Health Technology, , 2800 Lyngby , Denmark","Technical University of Denmark , Section for Bioinformatics, Department of Health Technology, , 2800 Lyngby , Denmark","Cancer Systems Biology, Section for Bioinformatics, Department of Health Technology, Technical University of Denmark, 2800 Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Cancer Systems Biology , Section for Bioinformatics, Department of Health Technology, , 2800 Lyngby , Denmark","institution_ids":["https://openalex.org/I96673099"]},{"raw_affiliation_string":"Technical University of Denmark , Section for Bioinformatics, Department of Health Technology, , 2800 Lyngby , Denmark","institution_ids":["https://openalex.org/I96673099"]},{"raw_affiliation_string":"Cancer Systems Biology, Section for Bioinformatics, Department of Health Technology, Technical University of Denmark, 2800 Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028146437","display_name":"Astrid Saksager","orcid":"https://orcid.org/0000-0002-5026-9337"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Astrid Saksager","raw_affiliation_strings":["Cancer Systems Biology , Section for Bioinformatics, Department of Health Technology, , 2800 Lyngby , Denmark","Technical University of Denmark , Section for Bioinformatics, Department of Health Technology, , 2800 Lyngby , Denmark","Cancer Systems Biology, Section for Bioinformatics, Department of Health Technology, Technical University of Denmark, 2800 Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Cancer Systems Biology , Section for Bioinformatics, Department of Health Technology, , 2800 Lyngby , Denmark","institution_ids":["https://openalex.org/I96673099"]},{"raw_affiliation_string":"Technical University of Denmark , Section for Bioinformatics, Department of Health Technology, , 2800 Lyngby , Denmark","institution_ids":["https://openalex.org/I96673099"]},{"raw_affiliation_string":"Cancer Systems Biology, Section for Bioinformatics, Department of Health Technology, Technical University of Denmark, 2800 Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034972106","display_name":"Matteo Tiberti","orcid":"https://orcid.org/0000-0003-2529-3594"},"institutions":[{"id":"https://openalex.org/I4210148920","display_name":"Danish Cancer Society","ror":"https://ror.org/03ytt7k16","country_code":"DK","type":"nonprofit","lineage":["https://openalex.org/I4210148920"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Matteo Tiberti","raw_affiliation_strings":["Cancer Structural Biology, Danish Cancer Institute , 2100 Copenhagen , Denmark"],"affiliations":[{"raw_affiliation_string":"Cancer Structural Biology, Danish Cancer Institute , 2100 Copenhagen , Denmark","institution_ids":["https://openalex.org/I4210148920"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089976447","display_name":"Elena Papaleo","orcid":"https://orcid.org/0000-0002-7376-5894"},"institutions":[{"id":"https://openalex.org/I4210148920","display_name":"Danish Cancer Society","ror":"https://ror.org/03ytt7k16","country_code":"DK","type":"nonprofit","lineage":["https://openalex.org/I4210148920"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Elena Papaleo","raw_affiliation_strings":["Cancer Structural Biology, Danish Cancer Institute , 2100 Copenhagen , Denmark","Cancer Systems Biology , Section for Bioinformatics, Department of Health Technology, , 2800 Lyngby , Denmark","Technical University of Denmark , Section for Bioinformatics, Department of Health Technology, , 2800 Lyngby , Denmark","Cancer Systems Biology, Section for Bioinformatics, Department of Health Technology, Technical University of Denmark, 2800 Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Cancer Structural Biology, Danish Cancer Institute , 2100 Copenhagen , Denmark","institution_ids":["https://openalex.org/I4210148920"]},{"raw_affiliation_string":"Cancer Systems Biology , Section for Bioinformatics, Department of Health Technology, , 2800 Lyngby , Denmark","institution_ids":["https://openalex.org/I96673099"]},{"raw_affiliation_string":"Technical University of Denmark , Section for Bioinformatics, Department of Health Technology, , 2800 Lyngby , Denmark","institution_ids":["https://openalex.org/I96673099"]},{"raw_affiliation_string":"Cancer Systems Biology, Section for Bioinformatics, Department of Health Technology, Technical University of Denmark, 2800 Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5057258895"],"corresponding_institution_ids":["https://openalex.org/I96673099"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":5.2664,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.96372397,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"25","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4789170026779175},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47775164246559143},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4517951011657715},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.43022263050079346},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2573327124118805},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22661179304122925}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4789170026779175},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47775164246559143},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4517951011657715},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.43022263050079346},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2573327124118805},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22661179304122925}],"mesh":[{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbad519","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad519","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbad519/56326037/bbad519.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38261338","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38261338","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10805075","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10805075","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10805075/pdf/bbad519.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbad519","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad519","pdf_url":"https://academic.oup.com/bib/article-pdf/25/2/bbad519/56326037/bbad519.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2969490907","display_name":null,"funder_award_id":"NNF20OC0065262","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G324704061","display_name":null,"funder_award_id":"R241-A33877","funder_id":"https://openalex.org/F4320326102","funder_display_name":"Hartmann Fonden"},{"id":"https://openalex.org/G546461080","display_name":null,"funder_award_id":"LF17006","funder_id":"https://openalex.org/F4320327561","funder_display_name":"LEO Fondet"},{"id":"https://openalex.org/G6376449950","display_name":null,"funder_award_id":"DNRF-125","funder_id":"https://openalex.org/F4320320943","funder_display_name":"Danmarks Grundforskningsfond"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320320943","display_name":"Danmarks Grundforskningsfond","ror":"https://ror.org/00znyv691"},{"id":"https://openalex.org/F4320325957","display_name":"Novo Nordisk Fonden","ror":"https://ror.org/04txyc737"},{"id":"https://openalex.org/F4320326102","display_name":"Hartmann Fonden","ror":null},{"id":"https://openalex.org/F4320327561","display_name":"LEO Fondet","ror":"https://ror.org/02rgsr590"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4391144770.pdf"},"referenced_works_count":166,"referenced_works":["https://openalex.org/W1956577542","https://openalex.org/W1976815080","https://openalex.org/W1979238734","https://openalex.org/W1980740976","https://openalex.org/W1991154912","https://openalex.org/W2016193168","https://openalex.org/W2024405748","https://openalex.org/W2034269086","https://openalex.org/W2038473742","https://openalex.org/W2044433401","https://openalex.org/W2070831760","https://openalex.org/W2114031931","https://openalex.org/W2114843025","https://openalex.org/W2117692326","https://openalex.org/W2129952088","https://openalex.org/W2129973040","https://openalex.org/W2130479394","https://openalex.org/W2141783822","https://openalex.org/W2141911176","https://openalex.org/W2148105023","https://openalex.org/W2154866190","https://openalex.org/W2160995259","https://openalex.org/W2195303995","https://openalex.org/W2225726427","https://openalex.org/W2257370818","https://openalex.org/W2284827612","https://openalex.org/W2344185956","https://openalex.org/W2346167176","https://openalex.org/W2439991713","https://openalex.org/W2521967673","https://openalex.org/W2535426958","https://openalex.org/W2557187647","https://openalex.org/W2562827486","https://openalex.org/W2566708720","https://openalex.org/W2582236637","https://openalex.org/W2591564563","https://openalex.org/W2611387862","https://openalex.org/W2612196455","https://openalex.org/W2614443510","https://openalex.org/W2625348030","https://openalex.org/W2734891494","https://openalex.org/W2743167137","https://openalex.org/W2751686252","https://openalex.org/W2754300472","https://openalex.org/W2763859406","https://openalex.org/W2771752959","https://openalex.org/W2790516087","https://openalex.org/W2791282726","https://openalex.org/W2796408191","https://openalex.org/W2808764596","https://openalex.org/W2810664395","https://openalex.org/W2883631445","https://openalex.org/W2883972171","https://openalex.org/W2884736612","https://openalex.org/W2884807099","https://openalex.org/W2894573839","https://openalex.org/W2898789672","https://openalex.org/W2903826068","https://openalex.org/W2905452503","https://openalex.org/W2913030342","https://openalex.org/W2913078802","https://openalex.org/W2915168078","https://openalex.org/W2921650138","https://openalex.org/W2932370125","https://openalex.org/W2944542290","https://openalex.org/W2944951458","https://openalex.org/W2945891661","https://openalex.org/W2949066452","https://openalex.org/W2950829512","https://openalex.org/W2950945059","https://openalex.org/W2951058810","https://openalex.org/W2951373902","https://openalex.org/W2951725468","https://openalex.org/W2952094639","https://openalex.org/W2958320340","https://openalex.org/W2967474035","https://openalex.org/W2969663251","https://openalex.org/W2971284101","https://openalex.org/W2973381322","https://openalex.org/W2976852018","https://openalex.org/W2980263986","https://openalex.org/W2982957574","https://openalex.org/W2983296017","https://openalex.org/W2984021089","https://openalex.org/W2989260018","https://openalex.org/W2989676989","https://openalex.org/W2995148032","https://openalex.org/W2998647770","https://openalex.org/W2999304491","https://openalex.org/W3002859816","https://openalex.org/W3008303614","https://openalex.org/W3012454626","https://openalex.org/W3013088405","https://openalex.org/W3015320198","https://openalex.org/W3023076637","https://openalex.org/W3024953911","https://openalex.org/W3038114454","https://openalex.org/W3038248848","https://openalex.org/W3042684639","https://openalex.org/W3043738080","https://openalex.org/W3045143113","https://openalex.org/W3047083370","https://openalex.org/W3047825284","https://openalex.org/W3082122339","https://openalex.org/W3084035323","https://openalex.org/W3087371631","https://openalex.org/W3087901980","https://openalex.org/W3095895133","https://openalex.org/W3098415816","https://openalex.org/W3102612616","https://openalex.org/W3108155943","https://openalex.org/W3111584436","https://openalex.org/W3112879688","https://openalex.org/W3114910817","https://openalex.org/W3116375360","https://openalex.org/W3128572085","https://openalex.org/W3129140812","https://openalex.org/W3129351841","https://openalex.org/W3130240800","https://openalex.org/W3145217038","https://openalex.org/W3161752886","https://openalex.org/W3164908261","https://openalex.org/W3177828909","https://openalex.org/W3179970855","https://openalex.org/W3182973519","https://openalex.org/W3184087999","https://openalex.org/W3202848468","https://openalex.org/W3203677669","https://openalex.org/W3206417123","https://openalex.org/W3208787103","https://openalex.org/W3209435229","https://openalex.org/W3211795435","https://openalex.org/W4205812412","https://openalex.org/W4206662285","https://openalex.org/W4210917993","https://openalex.org/W4213235305","https://openalex.org/W4220672913","https://openalex.org/W4220802507","https://openalex.org/W4221090435","https://openalex.org/W4225529913","https://openalex.org/W4281614237","https://openalex.org/W4283122993","https://openalex.org/W4283693948","https://openalex.org/W4286500588","https://openalex.org/W4306290667","https://openalex.org/W4308463927","https://openalex.org/W4309563206","https://openalex.org/W4310069568","https://openalex.org/W4310645193","https://openalex.org/W4319078047","https://openalex.org/W4327550249","https://openalex.org/W4360983726","https://openalex.org/W4366144498","https://openalex.org/W4367399594","https://openalex.org/W4376612841","https://openalex.org/W4384008100","https://openalex.org/W4385660193","https://openalex.org/W4386861232","https://openalex.org/W6661607218","https://openalex.org/W6769589212","https://openalex.org/W6786934481","https://openalex.org/W6787916842","https://openalex.org/W6839945865","https://openalex.org/W6840065848","https://openalex.org/W6848763128","https://openalex.org/W6851202398"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"The":[0],"vast":[1],"amount":[2],"of":[3,30,84,94,127,179,204],"available":[4],"sequencing":[5],"data":[6],"allows":[7],"the":[8,55,66,72,85,90,119,125,162,202,217],"scientific":[9],"community":[10],"to":[11,37,88,102,219],"explore":[12],"different":[13,67],"genetic":[14],"alterations":[15,121,141],"that":[16,76],"may":[17],"drive":[18],"cancer":[19,22,128,160,188],"or":[20,58,140,152,172,185],"favor":[21],"progression.":[23,154],"Software":[24],"developers":[25],"have":[26],"proposed":[27],"a":[28,59,80,105,114,143],"myriad":[29],"predictive":[31,187,194],"tools,":[32],"allowing":[33],"researchers":[34,101],"and":[35,39,43,45,92,109,117,158,181,201,213],"clinicians":[36],"compare":[38],"prioritize":[40],"driver":[41,189,197,199],"genes":[42],"mutations":[44],"their":[46],"relative":[47],"pathogenicity.":[48],"However,":[49,97],"there":[50],"is":[51,78,87],"little":[52],"consensus":[53],"on":[54,71,104,136,207],"computational":[56,159],"approach":[57],"golden":[60],"standard":[61],"for":[62,113,147,183,196],"comparison.":[63],"Hence,":[64],"benchmarking":[65],"tools":[68,112,195],"depends":[69],"highly":[70],"input":[73],"data,":[74],"indicating":[75],"overfitting":[77],"still":[79],"massive":[81],"problem.":[82],"One":[83],"solutions":[86],"limit":[89],"scope":[91],"usage":[93],"specific":[95,115],"tools.":[96,190],"such":[98],"limitations":[99],"force":[100],"walk":[103],"tightrope":[106],"between":[107],"creating":[108],"using":[110],"high-quality":[111],"purpose":[116],"describing":[118],"complex":[120],"driving":[122],"cancer.":[123],"While":[124],"knowledge":[126],"development":[129],"increases":[130],"daily,":[131],"many":[132],"bioinformatic":[133],"pipelines":[134],"rely":[135],"single":[137],"nucleotide":[138],"variants":[139],"in":[142,166,216],"vacuum":[144],"without":[145],"accounting":[146],"cellular":[148],"compartments,":[149],"mutational":[150],"burden":[151],"disease":[153],"Even":[155],"within":[156],"bioinformatics":[157],"biology,":[161],"research":[163],"fields":[164],"work":[165],"silos,":[167],"risking":[168],"overlooking":[169],"potential":[170],"synergies":[171],"breakthroughs.":[173],"Here,":[174],"we":[175,192,211],"provide":[176],"an":[177],"overview":[178],"databases":[180],"datasets":[182],"building":[184],"testing":[186],"Furthermore,":[191],"introduce":[193],"genes,":[198],"mutations,":[200],"impact":[203],"these":[205],"based":[206],"structural":[208],"analysis.":[209],"Additionally,":[210],"suggest":[212],"recommend":[214],"directions":[215],"field":[218],"avoid":[220],"silo-research,":[221],"moving":[222],"towards":[223],"integrative":[224],"frameworks.":[225]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":7}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
