{"id":"https://openalex.org/W4390711245","doi":"https://doi.org/10.1093/bib/bbad487","title":"Integrated bulk and single-cell transcriptomes reveal pyroptotic signature in prognosis and therapeutic options of hepatocellular carcinoma by combining deep learning","display_name":"Integrated bulk and single-cell transcriptomes reveal pyroptotic signature in prognosis and therapeutic options of hepatocellular carcinoma by combining deep learning","publication_year":2023,"publication_date":"2023-11-22","ids":{"openalex":"https://openalex.org/W4390711245","doi":"https://doi.org/10.1093/bib/bbad487","pmid":"https://pubmed.ncbi.nlm.nih.gov/38197309"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad487","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad487","pdf_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad487/55280098/bbad487.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad487/55280098/bbad487.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088290133","display_name":"Yang Liu","orcid":"https://orcid.org/0000-0001-9167-514X"},"institutions":[{"id":"https://openalex.org/I3017480383","display_name":"Southwest Medical University","ror":"https://ror.org/00g2rqs52","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I3017480383"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Liu","raw_affiliation_strings":["School of Basic Medical Sciences, Southwest Medical University , Luzhou 646000 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Southwest Medical University , Luzhou 646000 , China","institution_ids":["https://openalex.org/I3017480383"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100777495","display_name":"Hanlin Li","orcid":"https://orcid.org/0000-0002-5118-6576"},"institutions":[{"id":"https://openalex.org/I3017480383","display_name":"Southwest Medical University","ror":"https://ror.org/00g2rqs52","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I3017480383"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hanlin Li","raw_affiliation_strings":["School of Basic Medical Sciences, Southwest Medical University , Luzhou 646000 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Southwest Medical University , Luzhou 646000 , China","institution_ids":["https://openalex.org/I3017480383"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075247635","display_name":"Tianyu Zeng","orcid":"https://orcid.org/0000-0001-8656-3397"},"institutions":[{"id":"https://openalex.org/I3017480383","display_name":"Southwest Medical University","ror":"https://ror.org/00g2rqs52","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I3017480383"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tianyu Zeng","raw_affiliation_strings":["School of Basic Medical Sciences, Southwest Medical University , Luzhou 646000 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Southwest Medical University , Luzhou 646000 , China","institution_ids":["https://openalex.org/I3017480383"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100753986","display_name":"Yang Wang","orcid":"https://orcid.org/0000-0002-5276-7081"},"institutions":[{"id":"https://openalex.org/I3017480383","display_name":"Southwest Medical University","ror":"https://ror.org/00g2rqs52","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I3017480383"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Wang","raw_affiliation_strings":["School of Basic Medical Sciences, Southwest Medical University , Luzhou 646000 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Southwest Medical University , Luzhou 646000 , China","institution_ids":["https://openalex.org/I3017480383"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100671911","display_name":"Hongqi Zhang","orcid":"https://orcid.org/0000-0001-5750-4910"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongqi Zhang","raw_affiliation_strings":["School of Life Science and Technology , Center for Informational Biology, , Chengdu 610054 , China","University of Electronic Science and Technology of China , Center for Informational Biology, , Chengdu 610054 , China","School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 610054, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology , Center for Informational Biology, , Chengdu 610054 , China","institution_ids":["https://openalex.org/I150229711"]},{"raw_affiliation_string":"University of Electronic Science and Technology of China , Center for Informational Biology, , Chengdu 610054 , China","institution_ids":["https://openalex.org/I150229711"]},{"raw_affiliation_string":"School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 610054, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077959613","display_name":"Ying Wan","orcid":"https://orcid.org/0000-0001-5909-2892"},"institutions":[{"id":"https://openalex.org/I3017480383","display_name":"Southwest Medical University","ror":"https://ror.org/00g2rqs52","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I3017480383"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Wan","raw_affiliation_strings":["School of Basic Medical Sciences, Southwest Medical University , Luzhou 646000 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Southwest Medical University , Luzhou 646000 , China","institution_ids":["https://openalex.org/I3017480383"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069377267","display_name":"Zheng Shi","orcid":"https://orcid.org/0000-0002-1921-1145"},"institutions":[{"id":"https://openalex.org/I207528943","display_name":"Chengdu Medical College","ror":"https://ror.org/01c4jmp52","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I207528943"]},{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]},{"id":"https://openalex.org/I4210127266","display_name":"First Affiliated Hospital of Chengdu Medical College","ror":"https://ror.org/03jckbw05","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210127266"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zheng Shi","raw_affiliation_strings":["Chengdu University , Clinical Medical College & Affiliated Hospital, , Chengdu 610106 , China","Clinical Genetics Laboratory , Clinical Medical College & Affiliated Hospital, , Chengdu 610106 , China","Clinical Genetics Laboratory, Clinical Medical College & Affiliated Hospital, Chengdu University, Chengdu 610106, China"],"raw_orcid":"https://orcid.org/0000-0002-1921-1145","affiliations":[{"raw_affiliation_string":"Chengdu University , Clinical Medical College & Affiliated Hospital, , Chengdu 610106 , China","institution_ids":["https://openalex.org/I207528943","https://openalex.org/I4210125143"]},{"raw_affiliation_string":"Clinical Genetics Laboratory , Clinical Medical College & Affiliated Hospital, , Chengdu 610106 , China","institution_ids":["https://openalex.org/I207528943","https://openalex.org/I4210127266"]},{"raw_affiliation_string":"Clinical Genetics Laboratory, Clinical Medical College & Affiliated Hospital, Chengdu University, Chengdu 610106, China","institution_ids":["https://openalex.org/I4210125143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085487073","display_name":"Renzhi Cao","orcid":"https://orcid.org/0000-0002-8345-343X"},"institutions":[{"id":"https://openalex.org/I60065076","display_name":"Pacific Lutheran University","ror":"https://ror.org/01vh5nd96","country_code":"US","type":"education","lineage":["https://openalex.org/I60065076"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Renzhi Cao","raw_affiliation_strings":["Department of Computer Science, Pacific Lutheran University , Tacoma, Washington 98447 , USA"],"raw_orcid":"https://orcid.org/0000-0002-8345-343X","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Pacific Lutheran University , Tacoma, Washington 98447 , USA","institution_ids":["https://openalex.org/I60065076"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043530440","display_name":"Hua Tang","orcid":"https://orcid.org/0000-0001-6728-4544"},"institutions":[{"id":"https://openalex.org/I3017480383","display_name":"Southwest Medical University","ror":"https://ror.org/00g2rqs52","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I3017480383"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hua Tang","raw_affiliation_strings":["Basic Medicine Research Innovation Center for Cardiometabolic Diseases\uff0cMinistry of Education , Luzhou 646000 , China","Medical Engineering & Medical Informatics Integration and Transformational Medicine Key Laboratory of Luzhou City , Luzhou 646000 , China","School of Basic Medical Sciences, Southwest Medical University , Luzhou 646000 , China"],"raw_orcid":"https://orcid.org/0000-0001-6728-4544","affiliations":[{"raw_affiliation_string":"Basic Medicine Research Innovation Center for Cardiometabolic Diseases\uff0cMinistry of Education , Luzhou 646000 , China","institution_ids":[]},{"raw_affiliation_string":"Medical Engineering & Medical Informatics Integration and Transformational Medicine Key Laboratory of Luzhou City , Luzhou 646000 , China","institution_ids":[]},{"raw_affiliation_string":"School of Basic Medical Sciences, Southwest Medical University , Luzhou 646000 , China","institution_ids":["https://openalex.org/I3017480383"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5043530440","https://openalex.org/A5069377267","https://openalex.org/A5085487073"],"corresponding_institution_ids":["https://openalex.org/I207528943","https://openalex.org/I3017480383","https://openalex.org/I4210125143","https://openalex.org/I4210127266","https://openalex.org/I60065076"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":6.8542,"has_fulltext":true,"cited_by_count":41,"citation_normalized_percentile":{"value":0.97869846,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"25","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11668","display_name":"interferon and immune responses","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11313","display_name":"Immune cells in cancer","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pyroptosis","display_name":"Pyroptosis","score":0.8087033033370972},{"id":"https://openalex.org/keywords/hepatocellular-carcinoma","display_name":"Hepatocellular carcinoma","score":0.6986911296844482},{"id":"https://openalex.org/keywords/nomogram","display_name":"Nomogram","score":0.6569886207580566},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.5767740607261658},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.5268265604972839},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.4636382460594177},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.404765248298645},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.3893778324127197},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1701582670211792},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13900989294052124},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.06379470229148865},{"id":"https://openalex.org/keywords/inflammasome","display_name":"Inflammasome","score":0.06059616804122925}],"concepts":[{"id":"https://openalex.org/C17172800","wikidata":"https://www.wikidata.org/wiki/Q7263707","display_name":"Pyroptosis","level":4,"score":0.8087033033370972},{"id":"https://openalex.org/C2778019345","wikidata":"https://www.wikidata.org/wiki/Q1148337","display_name":"Hepatocellular carcinoma","level":2,"score":0.6986911296844482},{"id":"https://openalex.org/C34626388","wikidata":"https://www.wikidata.org/wiki/Q721129","display_name":"Nomogram","level":2,"score":0.6569886207580566},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.5767740607261658},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.5268265604972839},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.4636382460594177},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.404765248298645},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.3893778324127197},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1701582670211792},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13900989294052124},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.06379470229148865},{"id":"https://openalex.org/C2777209026","wikidata":"https://www.wikidata.org/wiki/Q412405","display_name":"Inflammasome","level":3,"score":0.06059616804122925},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C2776914184","wikidata":"https://www.wikidata.org/wiki/Q101991","display_name":"Inflammation","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbad487","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad487","pdf_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad487/55280098/bbad487.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38197309","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38197309","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10777172","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10777172","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10777172/pdf/bbad487.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbad487","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad487","pdf_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad487/55280098/bbad487.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.7300000190734863,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G4656501693","display_name":null,"funder_award_id":"62172343","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4390711245.pdf"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1594221952","https://openalex.org/W1864325817","https://openalex.org/W1998292400","https://openalex.org/W2036920798","https://openalex.org/W2047666011","https://openalex.org/W2049717739","https://openalex.org/W2116240199","https://openalex.org/W2116554142","https://openalex.org/W2126712555","https://openalex.org/W2131105131","https://openalex.org/W2137052325","https://openalex.org/W2155070258","https://openalex.org/W2159707944","https://openalex.org/W2167978765","https://openalex.org/W2179438025","https://openalex.org/W2223640451","https://openalex.org/W2461427403","https://openalex.org/W2616922646","https://openalex.org/W2617691667","https://openalex.org/W2740711073","https://openalex.org/W2759415766","https://openalex.org/W2767281692","https://openalex.org/W2770290595","https://openalex.org/W2775981503","https://openalex.org/W2795867722","https://openalex.org/W2868038495","https://openalex.org/W2886498337","https://openalex.org/W2908139053","https://openalex.org/W2949177718","https://openalex.org/W2949377065","https://openalex.org/W2952676090","https://openalex.org/W2953050318","https://openalex.org/W2977235223","https://openalex.org/W2982179016","https://openalex.org/W3014434233","https://openalex.org/W3048159287","https://openalex.org/W3083147931","https://openalex.org/W3119005666","https://openalex.org/W3128646645","https://openalex.org/W3137422569","https://openalex.org/W3182293965","https://openalex.org/W4205839370","https://openalex.org/W4224470052","https://openalex.org/W4281490788","https://openalex.org/W4292444293","https://openalex.org/W4298087996","https://openalex.org/W6757519749","https://openalex.org/W6806237631"],"related_works":["https://openalex.org/W3006826877","https://openalex.org/W2904552328","https://openalex.org/W3030255104","https://openalex.org/W4315754280","https://openalex.org/W4286252599","https://openalex.org/W3016527951","https://openalex.org/W3017185797","https://openalex.org/W3039374476","https://openalex.org/W2991971006","https://openalex.org/W3028605977"],"abstract_inverted_index":{"Although":[0],"some":[1],"pyroptosis-related":[2],"(PR)":[3],"prognostic":[4,70,100],"models":[5],"for":[6],"cancers":[7],"have":[8,13],"been":[9,15],"reported,":[10],"pyroptosis-based":[11],"features":[12],"not":[14],"fully":[16],"discovered":[17],"at":[18,46],"the":[19,42,57,69,80,103,136,159],"single-cell":[20,32,48],"level":[21],"in":[22,52,102,141,154,179],"hepatocellular":[23],"carcinoma":[24],"(HCC).":[25],"In":[26,157],"this":[27],"study,":[28],"by":[29],"deeply":[30],"integrating":[31],"and":[33,49,120,175],"bulk":[34,50],"transcriptome":[35],"data,":[36],"we":[37],"systematically":[38],"investigated":[39],"significance":[40],"of":[41,72,79,99,138,168],"shared":[43],"pyroptotic":[44,58,81],"signature":[45,82],"both":[47],"levels":[51],"HCC":[53,155],"prognosis.":[54],"Based":[55],"on":[56,83,111],"signature,":[59],"a":[60,165],"robust":[61],"PR":[62,107,127,144,161],"risk":[63,71,108,128,145,162],"system":[64,163],"was":[65,95,132],"constructed":[66,133,160],"to":[67,134,151],"quantify":[68],"individual":[73,139],"patient.":[74],"To":[75],"further":[76],"verify":[77],"capacity":[78],"predicting":[84],"patients'":[85],"prognosis,":[86],"an":[87],"attention":[88],"mechanism-based":[89],"deep":[90],"neural":[91],"network":[92],"classification":[93],"model":[94,125],"constructed.":[96],"The":[97,143],"mechanisms":[98],"difference":[101],"patients":[104,140],"with":[105,129],"distinct":[106],"were":[109],"dissected":[110],"tumor":[112,169],"stemness,":[113],"cancer":[114],"pathways,":[115],"transcriptional":[116],"regulation,":[117],"immune":[118],"infiltration":[119],"cell":[121],"communications.":[122],"A":[123],"nomogram":[124],"combining":[126],"clinicopathologic":[130],"data":[131],"evaluate":[135,148],"prognosis":[137,173],"clinic.":[142],"could":[146],"also":[147],"therapeutic":[149,177],"response":[150],"neoadjuvant":[152],"therapies":[153],"patients.":[156],"conclusion,":[158],"enables":[164],"comprehensive":[166],"assessment":[167],"microenvironment":[170],"characteristics,":[171],"accurate":[172],"prediction":[174],"rational":[176],"options":[178],"HCC.":[180]},"counts_by_year":[{"year":2026,"cited_by_count":14},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":6}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
