{"id":"https://openalex.org/W4390066222","doi":"https://doi.org/10.1093/bib/bbad466","title":"LDA-VGHB: identifying potential lncRNA\u2013disease associations with singular value decomposition, variational graph auto-encoder and heterogeneous Newton boosting machine","display_name":"LDA-VGHB: identifying potential lncRNA\u2013disease associations with singular value decomposition, variational graph auto-encoder and heterogeneous Newton boosting machine","publication_year":2023,"publication_date":"2023-11-22","ids":{"openalex":"https://openalex.org/W4390066222","doi":"https://doi.org/10.1093/bib/bbad466","pmid":"https://pubmed.ncbi.nlm.nih.gov/38127089"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad466","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad466","pdf_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad466/54705869/bbad466.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad466/54705869/bbad466.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007339758","display_name":"Lihong Peng","orcid":"https://orcid.org/0000-0002-2321-3901"},"institutions":[{"id":"https://openalex.org/I49934816","display_name":"Hunan University of Technology","ror":"https://ror.org/04j3vr751","country_code":"CN","type":"education","lineage":["https://openalex.org/I49934816"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lihong Peng","raw_affiliation_strings":["College of Life Sciences and Chemistry, Hunan University of Technology , 412007, Hunan , China","School of Computer Science, Hunan University of Technology , 412007, Hunan , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences and Chemistry, Hunan University of Technology , 412007, Hunan , China","institution_ids":["https://openalex.org/I49934816"]},{"raw_affiliation_string":"School of Computer Science, Hunan University of Technology , 412007, Hunan , China","institution_ids":["https://openalex.org/I49934816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115593967","display_name":"Liangliang Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I49934816","display_name":"Hunan University of Technology","ror":"https://ror.org/04j3vr751","country_code":"CN","type":"education","lineage":["https://openalex.org/I49934816"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liangliang Huang","raw_affiliation_strings":["School of Computer Science, Hunan University of Technology , 412007, Hunan , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Hunan University of Technology , 412007, Hunan , China","institution_ids":["https://openalex.org/I49934816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022534885","display_name":"Qiongli Su","orcid":"https://orcid.org/0000-0003-1602-0092"},"institutions":[{"id":"https://openalex.org/I4210137423","display_name":"Zhuzhou Central Hospital","ror":"https://ror.org/03prq2784","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137423"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiongli Su","raw_affiliation_strings":["Department of Pharmacy, the Affiliated Zhuzhou Hospital Xiangya Medical College CSU , 412007, Hunan , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacy, the Affiliated Zhuzhou Hospital Xiangya Medical College CSU , 412007, Hunan , China","institution_ids":["https://openalex.org/I4210137423"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044890075","display_name":"Geng Tian","orcid":"https://orcid.org/0000-0001-5752-4436"},"institutions":[{"id":"https://openalex.org/I4210139220","display_name":"Cipher Gene (China)","ror":"https://ror.org/03fqvdm62","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210139220"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Geng Tian","raw_affiliation_strings":["Geneis (Beijing) Co. Ltd , China, 100102, Beijing , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Geneis (Beijing) Co. Ltd , China, 100102, Beijing , China","institution_ids":["https://openalex.org/I4210139220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100337272","display_name":"Min Chen","orcid":"https://orcid.org/0000-0003-3439-3183"},"institutions":[{"id":"https://openalex.org/I96478251","display_name":"Hunan Institute of Technology","ror":"https://ror.org/04n3k2k71","country_code":"CN","type":"education","lineage":["https://openalex.org/I96478251"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Min Chen","raw_affiliation_strings":["School of Computer Science, Hunan Institute of Technology , 421002, No. 18 Henghua Road, Zhuhui District, Hengyang, Hunan , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Hunan Institute of Technology , 421002, No. 18 Henghua Road, Zhuhui District, Hengyang, Hunan , China","institution_ids":["https://openalex.org/I96478251"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062084611","display_name":"Guosheng Han","orcid":"https://orcid.org/0000-0002-7712-6213"},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Guosheng Han","raw_affiliation_strings":["Hunan Key Laboratory for Computation and Simulation in Science and Engineering, Xiangtan University , 411105, Yuhu District, Xiangtan, Hunan , China","School of Mathematics and Computational Science, Xiangtan University , 411105, Yuhu District, Xiangtan, Hunan , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Key Laboratory for Computation and Simulation in Science and Engineering, Xiangtan University , 411105, Yuhu District, Xiangtan, Hunan , China","institution_ids":["https://openalex.org/I4610292"]},{"raw_affiliation_string":"School of Mathematics and Computational Science, Xiangtan University , 411105, Yuhu District, Xiangtan, Hunan , China","institution_ids":["https://openalex.org/I4610292"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5062084611","https://openalex.org/A5100337272"],"corresponding_institution_ids":["https://openalex.org/I4610292","https://openalex.org/I96478251"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":null,"fwci":5.3832,"has_fulltext":true,"cited_by_count":51,"citation_normalized_percentile":{"value":0.97129915,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"25","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9203000068664551,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9182000160217285,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/boosting","display_name":"Boosting (machine learning)","score":0.6042935848236084},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5936083793640137},{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.582352340221405},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4851751923561096},{"id":"https://openalex.org/keywords/gradient-boosting","display_name":"Gradient boosting","score":0.4534459710121155},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.38615110516548157},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.32582151889801025},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.15262773633003235}],"concepts":[{"id":"https://openalex.org/C46686674","wikidata":"https://www.wikidata.org/wiki/Q466303","display_name":"Boosting (machine learning)","level":2,"score":0.6042935848236084},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5936083793640137},{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.582352340221405},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4851751923561096},{"id":"https://openalex.org/C70153297","wikidata":"https://www.wikidata.org/wiki/Q5591907","display_name":"Gradient boosting","level":3,"score":0.4534459710121155},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.38615110516548157},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.32582151889801025},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.15262773633003235},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007680","descriptor_name":"Kidney Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007680","descriptor_name":"Kidney Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007680","descriptor_name":"Kidney Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007680","descriptor_name":"Kidney Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007680","descriptor_name":"Kidney Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbad466","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad466","pdf_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad466/54705869/bbad466.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38127089","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38127089","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10734633","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10734633","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10734633/pdf/bbad466.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbad466","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad466","pdf_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad466/54705869/bbad466.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7599999904632568,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1721076738","display_name":null,"funder_award_id":"2021JJ30684","funder_id":"https://openalex.org/F4320322866","funder_display_name":"Natural Science Foundation of Hainan Province"},{"id":"https://openalex.org/G4031356638","display_name":null,"funder_award_id":"61803151","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5135434113","display_name":null,"funder_award_id":"2023JJ50201","funder_id":"https://openalex.org/F4320322866","funder_display_name":"Natural Science Foundation of Hainan Province"},{"id":"https://openalex.org/G632310686","display_name":null,"funder_award_id":"62172158","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322866","display_name":"Natural Science Foundation of Hainan Province","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4390066222.pdf","grobid_xml":"https://content.openalex.org/works/W4390066222.grobid-xml"},"referenced_works_count":120,"referenced_works":["https://openalex.org/W611910056","https://openalex.org/W1158178075","https://openalex.org/W1662382123","https://openalex.org/W1976988381","https://openalex.org/W2047189895","https://openalex.org/W2056393730","https://openalex.org/W2071271349","https://openalex.org/W2073136316","https://openalex.org/W2109225342","https://openalex.org/W2113868616","https://openalex.org/W2128983843","https://openalex.org/W2141222510","https://openalex.org/W2146120203","https://openalex.org/W2152970345","https://openalex.org/W2295598076","https://openalex.org/W2408796111","https://openalex.org/W2419488572","https://openalex.org/W2462108616","https://openalex.org/W2520972752","https://openalex.org/W2571449963","https://openalex.org/W2599024269","https://openalex.org/W2744931325","https://openalex.org/W2765372324","https://openalex.org/W2768348081","https://openalex.org/W2772618228","https://openalex.org/W2789758093","https://openalex.org/W2806353550","https://openalex.org/W2891866117","https://openalex.org/W2895679848","https://openalex.org/W2895882733","https://openalex.org/W2900509630","https://openalex.org/W2902393426","https://openalex.org/W2905162569","https://openalex.org/W2918050559","https://openalex.org/W2941503969","https://openalex.org/W2947420752","https://openalex.org/W2950389803","https://openalex.org/W2952153265","https://openalex.org/W2953422988","https://openalex.org/W2964015378","https://openalex.org/W2964022491","https://openalex.org/W2969761002","https://openalex.org/W2976011823","https://openalex.org/W2981620348","https://openalex.org/W2989667466","https://openalex.org/W3006715646","https://openalex.org/W3008835119","https://openalex.org/W3009203960","https://openalex.org/W3013787003","https://openalex.org/W3016216710","https://openalex.org/W3020929333","https://openalex.org/W3037117187","https://openalex.org/W3042394685","https://openalex.org/W3046766399","https://openalex.org/W3081960698","https://openalex.org/W3082139797","https://openalex.org/W3084155903","https://openalex.org/W3099929518","https://openalex.org/W3113563660","https://openalex.org/W3115421736","https://openalex.org/W3115880421","https://openalex.org/W3116229568","https://openalex.org/W3120280121","https://openalex.org/W3133130163","https://openalex.org/W3141066421","https://openalex.org/W3145754360","https://openalex.org/W3166489646","https://openalex.org/W3168360925","https://openalex.org/W3170286690","https://openalex.org/W3172441129","https://openalex.org/W3175544068","https://openalex.org/W3187582009","https://openalex.org/W3198707249","https://openalex.org/W3201642687","https://openalex.org/W3202143517","https://openalex.org/W3202551657","https://openalex.org/W3217643826","https://openalex.org/W4200144569","https://openalex.org/W4205567020","https://openalex.org/W4205705151","https://openalex.org/W4206995041","https://openalex.org/W4226172551","https://openalex.org/W4226324079","https://openalex.org/W4229332533","https://openalex.org/W4283592141","https://openalex.org/W4285076853","https://openalex.org/W4292722723","https://openalex.org/W4297257598","https://openalex.org/W4297772866","https://openalex.org/W4297891375","https://openalex.org/W4306732347","https://openalex.org/W4307179617","https://openalex.org/W4307502334","https://openalex.org/W4311285804","https://openalex.org/W4312084649","https://openalex.org/W4313424256","https://openalex.org/W4313525616","https://openalex.org/W4313525643","https://openalex.org/W4319786510","https://openalex.org/W4322614756","https://openalex.org/W4322754494","https://openalex.org/W4377231491","https://openalex.org/W4380370418","https://openalex.org/W4383113554","https://openalex.org/W4386575275","https://openalex.org/W6619076491","https://openalex.org/W6627747088","https://openalex.org/W6637178625","https://openalex.org/W6713726413","https://openalex.org/W6718962110","https://openalex.org/W6726873649","https://openalex.org/W6730084236","https://openalex.org/W6745121010","https://openalex.org/W6745609711","https://openalex.org/W6748328607","https://openalex.org/W6750729320","https://openalex.org/W6785115677","https://openalex.org/W6787533557","https://openalex.org/W6805944859","https://openalex.org/W6846053379"],"related_works":["https://openalex.org/W2967733078","https://openalex.org/W3204430031","https://openalex.org/W3137904399","https://openalex.org/W4310492845","https://openalex.org/W2885778889","https://openalex.org/W4310224730","https://openalex.org/W2766514146","https://openalex.org/W4289703016","https://openalex.org/W2885516856","https://openalex.org/W3094138326"],"abstract_inverted_index":{"Long":[0],"noncoding":[1],"RNAs":[2],"(lncRNAs)":[3],"participate":[4],"in":[5,18],"various":[6],"biological":[7,30,213],"processes":[8],"and":[9,17,27,34,55,59,81,83,91,101,104,125,140,143,181,194,205],"have":[10,21,168],"close":[11],"linkages":[12],"with":[13,71,114,150,198],"diseases.":[14,28,228],"In":[15],"vivo":[16],"vitro":[19],"experiments":[20,31,173],"validated":[22],"many":[23],"associations":[24],"between":[25],"lncRNAs":[26,103,132,148,167,225],"However,":[29],"are":[32],"time-consuming":[33],"expensive.":[35],"Here,":[36],"we":[37],"introduce":[38],"LDA-VGHB,":[39],"an":[40],"lncRNA-disease":[41,99],"association":[42],"(LDA)":[43],"identification":[44],"framework,":[45],"by":[46,171,175],"incorporating":[47],"feature":[48],"extraction":[49],"based":[50,62],"on":[51,63,96,122],"singular":[52],"value":[53],"decomposition":[54],"variational":[56],"graph":[57],"autoencoder":[58],"LDA":[60,74],"classification":[61],"heterogeneous":[64],"Newton":[65],"boosting":[66,86],"machine.":[67],"LDA-VGHB":[68,219,229],"was":[69,220],"compared":[70],"four":[72,84,119],"classical":[73],"prediction":[75],"methods":[76,113],"(i.e.":[77],"SDLDA,":[78],"LDNFSGB,":[79],"IPCARF":[80],"LDASR)":[82],"popular":[85],"models":[87],"(XGBoost,":[88],"AdaBoost,":[89],"CatBoost":[90],"LightGBM)":[92],"under":[93,118],"5-fold":[94],"cross-validations":[95,121],"lncRNAs,":[97],"diseases,":[98,106],"pairs":[100],"independent":[102,105],"respectively.":[107,208],"It":[108],"greatly":[109],"outperformed":[110],"the":[111,123,145,163,176],"other":[112],"its":[115],"prominent":[116],"performance":[117],"different":[120],"lncRNADisease":[124,179],"MNDR":[126],"databases.":[127],"We":[128,188,216],"further":[129,212],"investigated":[130],"potential":[131],"for":[133,226],"lung":[134,199],"cancer,":[135,137,200,202],"breast":[136,201],"colorectal":[138,203],"cancer":[139,204],"kidney":[141,206],"neoplasms":[142],"inferred":[144],"top":[146,165],"20":[147,166],"associated":[149],"them":[151],"among":[152],"all":[153],"their":[154],"unobserved":[155],"lncRNAs.":[156],"The":[157,209],"results":[158,210],"showed":[159],"that":[160,190,218],"most":[161],"of":[162,222],"predicted":[164],"been":[169],"verified":[170],"biomedical":[172],"provided":[174],"Lnc2Cancer":[177],"3.0,":[178],"v2.0":[180],"RNADisease":[182],"databases":[183],"as":[184,186],"well":[185],"publications.":[187],"found":[189],"HAR1A,":[191],"KCNQ1DN,":[192],"ZFAT-AS1":[193],"HAR1B":[195],"could":[196],"associate":[197],"neoplasms,":[207],"need":[211],"experimental":[214],"validation.":[215],"foresee":[217],"capable":[221],"identifying":[223],"possible":[224],"complex":[227],"is":[230],"publicly":[231],"available":[232],"at":[233],"https://github.com/plhhnu/LDA-VGHB.":[234]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":23},{"year":2024,"cited_by_count":20}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}
