{"id":"https://openalex.org/W4389315446","doi":"https://doi.org/10.1093/bib/bbad444","title":"VIGA: a one-stop tool for eukaryotic virus identification and genome assembly from next-generation-sequencing data","display_name":"VIGA: a one-stop tool for eukaryotic virus identification and genome assembly from next-generation-sequencing data","publication_year":2023,"publication_date":"2023-11-14","ids":{"openalex":"https://openalex.org/W4389315446","doi":"https://doi.org/10.1093/bib/bbad444","pmid":"https://pubmed.ncbi.nlm.nih.gov/38048079"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad444","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad444","pdf_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad444/53975031/bbad444.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad444/53975031/bbad444.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038269947","display_name":"Ping Fu","orcid":null},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ping Fu","raw_affiliation_strings":["Hunan University Bioinformatics Center, College of Biology, Hunan Provincial Key Laboratory of Medical Virology, , Changsha 410082, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan University Bioinformatics Center, College of Biology, Hunan Provincial Key Laboratory of Medical Virology, , Changsha 410082, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082188715","display_name":"Yifan Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yifan Wu","raw_affiliation_strings":["Hunan University Bioinformatics Center, College of Biology, Hunan Provincial Key Laboratory of Medical Virology, , Changsha 410082, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan University Bioinformatics Center, College of Biology, Hunan Provincial Key Laboratory of Medical Virology, , Changsha 410082, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100403346","display_name":"Zhiyuan Zhang","orcid":"https://orcid.org/0000-0002-7319-1288"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiyuan Zhang","raw_affiliation_strings":["Hunan University Bioinformatics Center, College of Biology, Hunan Provincial Key Laboratory of Medical Virology, , Changsha 410082, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan University Bioinformatics Center, College of Biology, Hunan Provincial Key Laboratory of Medical Virology, , Changsha 410082, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101886709","display_name":"Ye Qiu","orcid":"https://orcid.org/0000-0001-9182-1952"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ye Qiu","raw_affiliation_strings":["Hunan University Bioinformatics Center, College of Biology, Hunan Provincial Key Laboratory of Medical Virology, , Changsha 410082, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan University Bioinformatics Center, College of Biology, Hunan Provincial Key Laboratory of Medical Virology, , Changsha 410082, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100676295","display_name":"Yirong Wang","orcid":"https://orcid.org/0000-0002-1995-2728"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yirong Wang","raw_affiliation_strings":["Hunan University Bioinformatics Center, College of Biology, Hunan Provincial Key Laboratory of Medical Virology, , Changsha 410082, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan University Bioinformatics Center, College of Biology, Hunan Provincial Key Laboratory of Medical Virology, , Changsha 410082, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037335167","display_name":"Yousong Peng","orcid":"https://orcid.org/0000-0002-5482-9506"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yousong Peng","raw_affiliation_strings":["Hunan University Bioinformatics Center, College of Biology, Hunan Provincial Key Laboratory of Medical Virology, , Changsha 410082, China"],"raw_orcid":"https://orcid.org/0000-0002-5482-9506","affiliations":[{"raw_affiliation_string":"Hunan University Bioinformatics Center, College of Biology, Hunan Provincial Key Laboratory of Medical Virology, , Changsha 410082, China","institution_ids":["https://openalex.org/I16609230"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5037335167"],"corresponding_institution_ids":["https://openalex.org/I16609230"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.7087,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.8418815,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"25","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13220","display_name":"Plant and Fungal Interactions Research","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7223986983299255},{"id":"https://openalex.org/keywords/human-virome","display_name":"Human virome","score":0.6890882849693298},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5830413103103638},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5630229711532593},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5439119935035706},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.4705253839492798},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.298696905374527},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18687593936920166}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7223986983299255},{"id":"https://openalex.org/C190743605","wikidata":"https://www.wikidata.org/wiki/Q17027885","display_name":"Human virome","level":4,"score":0.6890882849693298},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5830413103103638},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5630229711532593},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5439119935035706},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.4705253839492798},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.298696905374527},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18687593936920166},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D003093","descriptor_name":"Colitis, Ulcerative","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003093","descriptor_name":"Colitis, Ulcerative","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003093","descriptor_name":"Colitis, Ulcerative","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003093","descriptor_name":"Colitis, Ulcerative","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003093","descriptor_name":"Colitis, Ulcerative","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003093","descriptor_name":"Colitis, Ulcerative","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003424","descriptor_name":"Crohn Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003424","descriptor_name":"Crohn Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003424","descriptor_name":"Crohn Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003424","descriptor_name":"Crohn Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003424","descriptor_name":"Crohn Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003424","descriptor_name":"Crohn Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbad444","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad444","pdf_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad444/53975031/bbad444.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38048079","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38048079","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10753531","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10753531","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10753531/pdf/bbad444.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbad444","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad444","pdf_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad444/53975031/bbad444.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6246526634","display_name":null,"funder_award_id":"32370700","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7181850838","display_name":null,"funder_award_id":"32170651","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389315446.pdf","grobid_xml":"https://content.openalex.org/works/W4389315446.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W1021674602","https://openalex.org/W1992687107","https://openalex.org/W1993210385","https://openalex.org/W2002875415","https://openalex.org/W2044010294","https://openalex.org/W2045204781","https://openalex.org/W2055043387","https://openalex.org/W2110233077","https://openalex.org/W2110650347","https://openalex.org/W2112888168","https://openalex.org/W2126419817","https://openalex.org/W2135621733","https://openalex.org/W2141637710","https://openalex.org/W2165446840","https://openalex.org/W2169899471","https://openalex.org/W2175526948","https://openalex.org/W2233332950","https://openalex.org/W2603415762","https://openalex.org/W2732139758","https://openalex.org/W2741393641","https://openalex.org/W2748558957","https://openalex.org/W2766401759","https://openalex.org/W2886502825","https://openalex.org/W2918965813","https://openalex.org/W2940459311","https://openalex.org/W2941199225","https://openalex.org/W2944627925","https://openalex.org/W2950954328","https://openalex.org/W2951912016","https://openalex.org/W2952045700","https://openalex.org/W2963963068","https://openalex.org/W2971251342","https://openalex.org/W2972131171","https://openalex.org/W2980426566","https://openalex.org/W2981615389","https://openalex.org/W2990249310","https://openalex.org/W2994669076","https://openalex.org/W3006087716","https://openalex.org/W3007490551","https://openalex.org/W3034944349","https://openalex.org/W3091956242","https://openalex.org/W3118981004","https://openalex.org/W3161179294","https://openalex.org/W3183186664","https://openalex.org/W4200505767","https://openalex.org/W4223478735","https://openalex.org/W4226119892","https://openalex.org/W4281621010","https://openalex.org/W4286599620","https://openalex.org/W4311928790","https://openalex.org/W4318756379","https://openalex.org/W4382181182","https://openalex.org/W4383704270","https://openalex.org/W6742902206"],"related_works":["https://openalex.org/W4297154044","https://openalex.org/W3213058918","https://openalex.org/W4377942519","https://openalex.org/W2751684444","https://openalex.org/W3200808964","https://openalex.org/W2794386548","https://openalex.org/W4381279187","https://openalex.org/W1841715584","https://openalex.org/W2766401759","https://openalex.org/W3134563641"],"abstract_inverted_index":{"Identification":[0],"of":[1,6,43,127,131,147],"viruses":[2],"and":[3,34,51,65,71,90,93,120,124,135,145],"further":[4],"assembly":[5,36,50],"viral":[7],"genomes":[8,82,99],"from":[9,37,115],"the":[10,88,101,110,116,150],"next-generation-sequencing":[11],"data":[12,92,114],"are":[13],"essential":[14],"steps":[15],"in":[16,96,112,129,143,153],"virome":[17,73,111],"studies.":[18,155],"This":[19],"study":[20],"presented":[21],"a":[22],"one-stop":[23],"tool":[24],"named":[25],"VIGA":[26,77,105,139],"(available":[27],"at":[28,100],"https://github.com/viralInformatics/VIGA)":[29],"for":[30],"eukaryotic":[31],"virus":[32,53,81,98],"identification":[33,144],"genome":[35],"NGS":[38],"data.":[39],"It":[40],"was":[41,106],"composed":[42],"four":[44],"modules,":[45],"namely,":[46],"identification,":[47],"taxonomic":[48],"annotation,":[49],"novel":[52],"discovery,":[54],"which":[55],"integrated":[56],"several":[57],"third-party":[58],"tools":[59],"such":[60],"as":[61],"BLAST,":[62],"Trinity,":[63],"MetaCompass":[64],"RagTag.":[66],"Evaluation":[67],"on":[68,86],"multiple":[69],"simulated":[70],"real":[72],"datasets":[74],"showed":[75],"that":[76],"assembled":[78],"more":[79],"complete":[80],"than":[83],"its":[84],"competitors":[85],"both":[87],"metatranscriptomic":[89,113],"metagenomic":[91],"performed":[94],"well":[95],"assembling":[97],"strain":[102],"level.":[103],"Finally,":[104],"used":[107],"to":[108],"investigate":[109],"Human":[117],"Microbiome":[118],"Project":[119],"revealed":[121],"different":[122],"composition":[123],"positive":[125],"rate":[126],"viromes":[128],"diseases":[130],"prediabetes,":[132],"Crohn's":[133],"disease":[134],"ulcerative":[136],"colitis.":[137],"Overall,":[138],"would":[140],"help":[141],"much":[142],"characterization":[146],"viromes,":[148],"especially":[149],"known":[151],"viruses,":[152],"future":[154]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
