{"id":"https://openalex.org/W4389452928","doi":"https://doi.org/10.1093/bib/bbad438","title":"A transformer-based genomic prediction method fused with knowledge-guided module","display_name":"A transformer-based genomic prediction method fused with knowledge-guided module","publication_year":2023,"publication_date":"2023-11-22","ids":{"openalex":"https://openalex.org/W4389452928","doi":"https://doi.org/10.1093/bib/bbad438","pmid":"https://pubmed.ncbi.nlm.nih.gov/38058185"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad438","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad438","pdf_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad438/54036302/bbad438.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad438/54036302/bbad438.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014693672","display_name":"Cuiling Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Cuiling Wu","raw_affiliation_strings":["Institute of Intelligent Computing, Zhejiang Lab , Hangzhou 311121, China"],"raw_orcid":"https://orcid.org/0009-0008-2407-5839","affiliations":[{"raw_affiliation_string":"Institute of Intelligent Computing, Zhejiang Lab , Hangzhou 311121, China","institution_ids":["https://openalex.org/I4210123185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100671807","display_name":"Yiyi Zhang","orcid":"https://orcid.org/0000-0001-8785-126X"},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiyi Zhang","raw_affiliation_strings":["Institute of Intelligent Computing, Zhejiang Lab , Hangzhou 311121, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Intelligent Computing, Zhejiang Lab , Hangzhou 311121, China","institution_ids":["https://openalex.org/I4210123185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101203640","display_name":"Zhiwen Ying","orcid":null},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiwen Ying","raw_affiliation_strings":["Institute of Intelligent Computing, Zhejiang Lab , Hangzhou 311121, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Intelligent Computing, Zhejiang Lab , Hangzhou 311121, China","institution_ids":["https://openalex.org/I4210123185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100435340","display_name":"Ling Li","orcid":"https://orcid.org/0000-0002-3280-9475"},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ling Li","raw_affiliation_strings":["Institute of Intelligent Computing, Zhejiang Lab , Hangzhou 311121, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Intelligent Computing, Zhejiang Lab , Hangzhou 311121, China","institution_ids":["https://openalex.org/I4210123185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111964102","display_name":"Jun Wang","orcid":"https://orcid.org/0009-0008-8475-2934"},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Wang","raw_affiliation_strings":["Institute of Intelligent Computing, Zhejiang Lab , Hangzhou 311121, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Intelligent Computing, Zhejiang Lab , Hangzhou 311121, China","institution_ids":["https://openalex.org/I4210123185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066300952","display_name":"Hui Yu","orcid":"https://orcid.org/0000-0002-5605-0950"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210101301","display_name":"Northeast Institute of Geography and Agroecology","ror":"https://ror.org/01a9z1q73","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210101301"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Yu","raw_affiliation_strings":["Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences , Changchun 130012, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences , Changchun 130012, China","institution_ids":["https://openalex.org/I4210101301","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101750042","display_name":"Mengchen Zhang","orcid":"https://orcid.org/0000-0003-2099-9416"},"institutions":[{"id":"https://openalex.org/I4210160522","display_name":"China National Rice Research Institute","ror":"https://ror.org/05szcn205","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengchen Zhang","raw_affiliation_strings":["State Key Laboratory of Rice Biology, China National Rice Research Institute , Hangzhou 310006, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Rice Biology, China National Rice Research Institute , Hangzhou 310006, China","institution_ids":["https://openalex.org/I4210160522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108137566","display_name":"Xianzhong Feng","orcid":"https://orcid.org/0000-0002-7129-3731"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210101301","display_name":"Northeast Institute of Geography and Agroecology","ror":"https://ror.org/01a9z1q73","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210101301"]},{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianzhong Feng","raw_affiliation_strings":["Institute of Intelligent Computing, Zhejiang Lab , Hangzhou 311121, China","Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences , Changchun 130012, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Intelligent Computing, Zhejiang Lab , Hangzhou 311121, China","institution_ids":["https://openalex.org/I4210123185"]},{"raw_affiliation_string":"Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences , Changchun 130012, China","institution_ids":["https://openalex.org/I4210101301","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060099082","display_name":"Xinghua Wei","orcid":"https://orcid.org/0000-0002-0883-3694"},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I4210160522","display_name":"China National Rice Research Institute","ror":"https://ror.org/05szcn205","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinghua Wei","raw_affiliation_strings":["Institute of Intelligent Computing, Zhejiang Lab , Hangzhou 311121, China","State Key Laboratory of Rice Biology, China National Rice Research Institute , Hangzhou 310006, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Intelligent Computing, Zhejiang Lab , Hangzhou 311121, China","institution_ids":["https://openalex.org/I4210123185"]},{"raw_affiliation_string":"State Key Laboratory of Rice Biology, China National Rice Research Institute , Hangzhou 310006, China","institution_ids":["https://openalex.org/I4210160522"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032067104","display_name":"Xiaogang Xu","orcid":"https://orcid.org/0000-0002-7928-7336"},"institutions":[{"id":"https://openalex.org/I75059550","display_name":"Zhejiang Gongshang University","ror":"https://ror.org/0569mkk41","country_code":"CN","type":"education","lineage":["https://openalex.org/I75059550"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaogang Xu","raw_affiliation_strings":["School of Computer and Information Engineering, Zhejiang Gongshang University , Hangzhou 310018, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer and Information Engineering, Zhejiang Gongshang University , Hangzhou 310018, China","institution_ids":["https://openalex.org/I75059550"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5014693672"],"corresponding_institution_ids":["https://openalex.org/I4210123185"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":10.9901,"has_fulltext":true,"cited_by_count":36,"citation_normalized_percentile":{"value":0.98695225,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"25","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6540920734405518},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.6028258204460144},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34526610374450684},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3285136818885803},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1378714144229889},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.08684933185577393},{"id":"https://openalex.org/keywords/voltage","display_name":"Voltage","score":0.05632215738296509}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6540920734405518},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.6028258204460144},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34526610374450684},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3285136818885803},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1378714144229889},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.08684933185577393},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.05632215738296509}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbad438","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad438","pdf_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad438/54036302/bbad438.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38058185","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38058185","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10701102","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10701102","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10701102/pdf/bbad438.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbad438","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad438","pdf_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad438/54036302/bbad438.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4389452928.pdf"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1607760198","https://openalex.org/W1928998639","https://openalex.org/W2064013109","https://openalex.org/W2065808340","https://openalex.org/W2067715889","https://openalex.org/W2076300862","https://openalex.org/W2099085143","https://openalex.org/W2105889691","https://openalex.org/W2108901357","https://openalex.org/W2110035718","https://openalex.org/W2123633988","https://openalex.org/W2200365462","https://openalex.org/W2258788146","https://openalex.org/W2416832827","https://openalex.org/W2439742035","https://openalex.org/W2564688219","https://openalex.org/W2760544538","https://openalex.org/W2768348081","https://openalex.org/W2796468311","https://openalex.org/W2887039631","https://openalex.org/W2981502071","https://openalex.org/W3012909962","https://openalex.org/W3116486569","https://openalex.org/W3127238141","https://openalex.org/W3200488575","https://openalex.org/W3203588026","https://openalex.org/W3212890323","https://openalex.org/W4224863002","https://openalex.org/W4292779060","https://openalex.org/W4295312788","https://openalex.org/W4303433295","https://openalex.org/W4308775252","https://openalex.org/W4385245566","https://openalex.org/W6739901393","https://openalex.org/W6745609711","https://openalex.org/W6766978945","https://openalex.org/W6778883912","https://openalex.org/W6797155008"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W3204019825"],"abstract_inverted_index":{"Genomic":[0],"prediction":[1,106,122],"(GP)":[2],"uses":[3],"single":[4],"nucleotide":[5],"polymorphisms":[6],"(SNPs)":[7],"to":[8,60,146,191,196],"establish":[9],"associations":[10],"between":[11,88],"markers":[12],"and":[13,28,62,117,133,164,189,193],"phenotypes.":[14],"Selection":[15],"of":[16,48,57,84,126,174,182,199],"early":[17],"individuals":[18],"by":[19,75],"genomic":[20,121],"estimated":[21],"breeding":[22,32],"value":[23],"shortens":[24],"the":[25,31,46,55,85,134,180],"generation":[26],"interval":[27],"speeds":[29],"up":[30],"process.":[33],"Recently,":[34],"methods":[35],"based":[36],"on":[37,93,176],"deep":[38,118],"learning":[39],"(DL)":[40],"have":[41],"gained":[42],"great":[43],"attention":[44],"in":[45,124],"field":[47],"GP.":[49],"In":[50],"this":[51],"study,":[52],"we":[53,140],"explore":[54],"application":[56,207],"Transformer-based":[58],"structures":[59],"GP":[61],"develop":[63],"a":[64,72,142],"novel":[65],"deep-learning":[66],"model":[67],"named":[68],"GPformer.":[69],"GPformer":[70,100,156,186],"obtains":[71],"global":[73],"view":[74],"gleaning":[76],"beneficial":[77],"information":[78],"from":[79],"all":[80],"relevant":[81],"SNPs":[82],"regardless":[83],"physical":[86],"distance":[87],"SNPs.":[89],"Comprehensive":[90],"experimental":[91],"results":[92],"five":[94],"different":[95],"crop":[96],"datasets":[97,178],"show":[98],"that":[99],"outperforms":[101],"ridge":[102],"regression-based":[103],"linear":[104],"unbiased":[105],"(RR-BLUP),":[107],"support":[108],"vector":[109],"regression":[110],"(SVR),":[111],"light":[112],"gradient":[113],"boosting":[114],"machine":[115],"(LightGBM)":[116],"neural":[119],"network":[120],"(DNNGP)":[123],"terms":[125],"mean":[127],"absolute":[128],"error,":[129],"Pearson's":[130],"correlation":[131],"coefficient":[132],"proposed":[135],"metric":[136],"consistent":[137],"index.":[138],"Furthermore,":[139],"introduce":[141],"knowledge-guided":[143],"module":[144],"(KGM)":[145],"extract":[147],"genome-wide":[148],"association":[149],"studies-based":[150],"information,":[151],"which":[152,202],"is":[153,161,187,203],"fused":[154],"into":[155,168],"as":[157],"prior":[158],"knowledge.":[159],"KGM":[160,175,183],"very":[162],"flexible":[163],"can":[165,194],"be":[166],"plugged":[167],"any":[169],"DL":[170],"network.":[171],"Ablation":[172],"studies":[173],"three":[177],"illustrate":[179],"efficiency":[181],"adequately.":[184],"Moreover,":[185],"robust":[188],"stable":[190],"hyperparameters":[192],"generalize":[195],"each":[197],"phenotype":[198],"every":[200],"dataset,":[201],"suitable":[204],"for":[205],"practical":[206],"scenarios.":[208]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":22},{"year":2024,"cited_by_count":6}],"updated_date":"2026-01-24T23:23:39.755997","created_date":"2025-10-10T00:00:00"}