{"id":"https://openalex.org/W4389159858","doi":"https://doi.org/10.1093/bib/bbad434","title":"VirusHound-I: prediction of viral proteins involved in the evasion of host adaptive immune response using the random forest algorithm and generative adversarial network for data augmentation","display_name":"VirusHound-I: prediction of viral proteins involved in the evasion of host adaptive immune response using the random forest algorithm and generative adversarial network for data augmentation","publication_year":2023,"publication_date":"2023-11-22","ids":{"openalex":"https://openalex.org/W4389159858","doi":"https://doi.org/10.1093/bib/bbad434","pmid":"https://pubmed.ncbi.nlm.nih.gov/38033292"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad434","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad434","pdf_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad434/53933285/bbad434.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad434/53933285/bbad434.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103181882","display_name":"Jorge F. Beltr\u00e1n","orcid":"https://orcid.org/0000-0003-2703-9629"},"institutions":[{"id":"https://openalex.org/I11944219","display_name":"Universidad de La Frontera","ror":"https://ror.org/04v0snf24","country_code":"CL","type":"education","lineage":["https://openalex.org/I11944219"]},{"id":"https://openalex.org/I2802558902","display_name":"Universidad Cat\u00f3lica de Temuco","ror":"https://ror.org/051nvp675","country_code":"CL","type":"education","lineage":["https://openalex.org/I2802558902"]}],"countries":["CL"],"is_corresponding":true,"raw_author_name":"Jorge F Beltr\u00e1n","raw_affiliation_strings":["Department of Chemical Engineering , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","Universidad de La Frontera , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Ave. Francisco Salazar 01145, Temuco, Chile"],"raw_orcid":"https://orcid.org/0000-0003-2703-9629","affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","institution_ids":["https://openalex.org/I11944219","https://openalex.org/I2802558902"]},{"raw_affiliation_string":"Universidad de La Frontera , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","institution_ids":["https://openalex.org/I11944219"]},{"raw_affiliation_string":"Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Ave. Francisco Salazar 01145, Temuco, Chile","institution_ids":["https://openalex.org/I11944219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002687787","display_name":"Lisandra Herrera Bel\u00e9n","orcid":"https://orcid.org/0000-0003-2691-0777"},"institutions":[{"id":"https://openalex.org/I4210122369","display_name":"Universidad Santo Tom\u00e1s","ror":"https://ror.org/02vbtzd72","country_code":"CL","type":"education","lineage":["https://openalex.org/I4210122369"]},{"id":"https://openalex.org/I69737025","display_name":"University of Chile","ror":"https://ror.org/047gc3g35","country_code":"CL","type":"education","lineage":["https://openalex.org/I69737025"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Lisandra Herrera Bel\u00e9n","raw_affiliation_strings":["Departamento de Ciencias B\u00e1sicas , Facultad de Ciencias, , Chile","Universidad Santo Tomas , Facultad de Ciencias, , Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Ciencias B\u00e1sicas , Facultad de Ciencias, , Chile","institution_ids":["https://openalex.org/I69737025"]},{"raw_affiliation_string":"Universidad Santo Tomas , Facultad de Ciencias, , Chile","institution_ids":["https://openalex.org/I4210122369"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045510798","display_name":"Jorge G. Far\u00edas","orcid":"https://orcid.org/0000-0001-7660-9603"},"institutions":[{"id":"https://openalex.org/I11944219","display_name":"Universidad de La Frontera","ror":"https://ror.org/04v0snf24","country_code":"CL","type":"education","lineage":["https://openalex.org/I11944219"]},{"id":"https://openalex.org/I2802558902","display_name":"Universidad Cat\u00f3lica de Temuco","ror":"https://ror.org/051nvp675","country_code":"CL","type":"education","lineage":["https://openalex.org/I2802558902"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Jorge G Farias","raw_affiliation_strings":["Department of Chemical Engineering , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","Universidad de La Frontera , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Ave. Francisco Salazar 01145, Temuco, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","institution_ids":["https://openalex.org/I11944219","https://openalex.org/I2802558902"]},{"raw_affiliation_string":"Universidad de La Frontera , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","institution_ids":["https://openalex.org/I11944219"]},{"raw_affiliation_string":"Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Ave. Francisco Salazar 01145, Temuco, Chile","institution_ids":["https://openalex.org/I11944219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114377335","display_name":"Mauricio Zamorano","orcid":"https://orcid.org/0000-0002-4559-4653"},"institutions":[{"id":"https://openalex.org/I11944219","display_name":"Universidad de La Frontera","ror":"https://ror.org/04v0snf24","country_code":"CL","type":"education","lineage":["https://openalex.org/I11944219"]},{"id":"https://openalex.org/I2802558902","display_name":"Universidad Cat\u00f3lica de Temuco","ror":"https://ror.org/051nvp675","country_code":"CL","type":"education","lineage":["https://openalex.org/I2802558902"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Mauricio Zamorano","raw_affiliation_strings":["Department of Chemical Engineering , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","Universidad de La Frontera , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Ave. Francisco Salazar 01145, Temuco, Chile"],"raw_orcid":"https://orcid.org/0000-0002-4559-4653","affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","institution_ids":["https://openalex.org/I11944219","https://openalex.org/I2802558902"]},{"raw_affiliation_string":"Universidad de La Frontera , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","institution_ids":["https://openalex.org/I11944219"]},{"raw_affiliation_string":"Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Ave. Francisco Salazar 01145, Temuco, Chile","institution_ids":["https://openalex.org/I11944219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076942854","display_name":"Nicol\u00e1s Lefin","orcid":"https://orcid.org/0009-0008-8901-0358"},"institutions":[{"id":"https://openalex.org/I11944219","display_name":"Universidad de La Frontera","ror":"https://ror.org/04v0snf24","country_code":"CL","type":"education","lineage":["https://openalex.org/I11944219"]},{"id":"https://openalex.org/I2802558902","display_name":"Universidad Cat\u00f3lica de Temuco","ror":"https://ror.org/051nvp675","country_code":"CL","type":"education","lineage":["https://openalex.org/I2802558902"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Nicol\u00e1s Lefin","raw_affiliation_strings":["Department of Chemical Engineering , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","Universidad de La Frontera , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Ave. Francisco Salazar 01145, Temuco, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","institution_ids":["https://openalex.org/I11944219","https://openalex.org/I2802558902"]},{"raw_affiliation_string":"Universidad de La Frontera , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","institution_ids":["https://openalex.org/I11944219"]},{"raw_affiliation_string":"Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Ave. Francisco Salazar 01145, Temuco, Chile","institution_ids":["https://openalex.org/I11944219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104205473","display_name":"Javiera Miranda","orcid":null},"institutions":[{"id":"https://openalex.org/I11944219","display_name":"Universidad de La Frontera","ror":"https://ror.org/04v0snf24","country_code":"CL","type":"education","lineage":["https://openalex.org/I11944219"]},{"id":"https://openalex.org/I2802558902","display_name":"Universidad Cat\u00f3lica de Temuco","ror":"https://ror.org/051nvp675","country_code":"CL","type":"education","lineage":["https://openalex.org/I2802558902"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Javiera Miranda","raw_affiliation_strings":["Department of Chemical Engineering , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","Universidad de La Frontera , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Ave. Francisco Salazar 01145, Temuco, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","institution_ids":["https://openalex.org/I11944219","https://openalex.org/I2802558902"]},{"raw_affiliation_string":"Universidad de La Frontera , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","institution_ids":["https://openalex.org/I11944219"]},{"raw_affiliation_string":"Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Ave. Francisco Salazar 01145, Temuco, Chile","institution_ids":["https://openalex.org/I11944219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5093382635","display_name":"Fernanda Parraguez-Contreras","orcid":null},"institutions":[{"id":"https://openalex.org/I11944219","display_name":"Universidad de La Frontera","ror":"https://ror.org/04v0snf24","country_code":"CL","type":"education","lineage":["https://openalex.org/I11944219"]},{"id":"https://openalex.org/I2802558902","display_name":"Universidad Cat\u00f3lica de Temuco","ror":"https://ror.org/051nvp675","country_code":"CL","type":"education","lineage":["https://openalex.org/I2802558902"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Fernanda Parraguez-Contreras","raw_affiliation_strings":["Department of Chemical Engineering , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","Universidad de La Frontera , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Ave. Francisco Salazar 01145, Temuco, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","institution_ids":["https://openalex.org/I11944219","https://openalex.org/I2802558902"]},{"raw_affiliation_string":"Universidad de La Frontera , Faculty of Engineering and Science, , Ave. Francisco Salazar 01145, Temuco , Chile","institution_ids":["https://openalex.org/I11944219"]},{"raw_affiliation_string":"Department of Chemical Engineering, Faculty of Engineering and Science, Universidad de La Frontera, Ave. Francisco Salazar 01145, Temuco, Chile","institution_ids":["https://openalex.org/I11944219"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5103181882"],"corresponding_institution_ids":["https://openalex.org/I11944219","https://openalex.org/I2802558902"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.0084,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.74664158,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"25","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11668","display_name":"interferon and immune responses","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5953365564346313},{"id":"https://openalex.org/keywords/perceptron","display_name":"Perceptron","score":0.5839243531227112},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5535986423492432},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.5090534090995789},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.501518726348877},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.46730777621269226},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.45323750376701355},{"id":"https://openalex.org/keywords/acquired-immune-system","display_name":"Acquired immune system","score":0.44433966279029846},{"id":"https://openalex.org/keywords/generative-model","display_name":"Generative model","score":0.4398013949394226},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4021247625350952},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.3966701030731201},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.35852521657943726},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29285377264022827},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18187996745109558},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.1358833611011505},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1298130452632904}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5953365564346313},{"id":"https://openalex.org/C60908668","wikidata":"https://www.wikidata.org/wiki/Q690207","display_name":"Perceptron","level":3,"score":0.5839243531227112},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5535986423492432},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.5090534090995789},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.501518726348877},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.46730777621269226},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.45323750376701355},{"id":"https://openalex.org/C193419808","wikidata":"https://www.wikidata.org/wiki/Q1645075","display_name":"Acquired immune system","level":3,"score":0.44433966279029846},{"id":"https://openalex.org/C167966045","wikidata":"https://www.wikidata.org/wiki/Q5532625","display_name":"Generative model","level":3,"score":0.4398013949394226},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4021247625350952},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.3966701030731201},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.35852521657943726},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29285377264022827},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18187996745109558},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.1358833611011505},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1298130452632904}],"mesh":[{"descriptor_ui":"D000093743","descriptor_name":"Random Forest","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000093743","descriptor_name":"Random Forest","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000093743","descriptor_name":"Random Forest","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000093743","descriptor_name":"Random Forest","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000093743","descriptor_name":"Random Forest","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000093743","descriptor_name":"Random Forest","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbad434","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad434","pdf_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad434/53933285/bbad434.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38033292","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38033292","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10753651","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10753651","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10753651/pdf/bbad434.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:repositorio.ufro.cl:12011","is_oa":true,"landing_page_url":"https://repositorio.ufro.cl/s/repositorio-ufro/item/12011","pdf_url":"https://repositorio.ufro.cl/files/original/65782ac9d90b5f7f29fb8c9835d7b50b23d8a7bd.pdf","source":{"id":"https://openalex.org/S7407063275","display_name":"Omeka S (Universidad de La Frontera)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BRIEFINGS IN BIOINFORMATICS","raw_type":"art\u00edculo original"}],"best_oa_location":{"id":"doi:10.1093/bib/bbad434","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad434","pdf_url":"https://academic.oup.com/bib/article-pdf/25/1/bbad434/53933285/bbad434.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7400000095367432,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323339","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389159858.pdf","grobid_xml":"https://content.openalex.org/works/W4389159858.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W1600672688","https://openalex.org/W1963987860","https://openalex.org/W1972434619","https://openalex.org/W1988607262","https://openalex.org/W1996020380","https://openalex.org/W1998523455","https://openalex.org/W2023168923","https://openalex.org/W2035637932","https://openalex.org/W2039674728","https://openalex.org/W2063996876","https://openalex.org/W2066719237","https://openalex.org/W2077301497","https://openalex.org/W2080347641","https://openalex.org/W2097834518","https://openalex.org/W2101565577","https://openalex.org/W2102367710","https://openalex.org/W2110957748","https://openalex.org/W2114423503","https://openalex.org/W2116454115","https://openalex.org/W2126933453","https://openalex.org/W2130574645","https://openalex.org/W2136930152","https://openalex.org/W2159148537","https://openalex.org/W2343567215","https://openalex.org/W2406768133","https://openalex.org/W2412727661","https://openalex.org/W2616246685","https://openalex.org/W2891003475","https://openalex.org/W2917603237","https://openalex.org/W2969923816","https://openalex.org/W2976284630","https://openalex.org/W2979588939","https://openalex.org/W2987724682","https://openalex.org/W3003285614","https://openalex.org/W3030778043","https://openalex.org/W3036892971","https://openalex.org/W3082096568","https://openalex.org/W3082758112","https://openalex.org/W3095560944","https://openalex.org/W3112376646","https://openalex.org/W3134414787","https://openalex.org/W3141691617","https://openalex.org/W3185433118","https://openalex.org/W3186424845","https://openalex.org/W4200003503","https://openalex.org/W4200376519","https://openalex.org/W4206270689","https://openalex.org/W4207007960","https://openalex.org/W4220900187","https://openalex.org/W4225335692","https://openalex.org/W4281768377","https://openalex.org/W4291019765","https://openalex.org/W4307565334","https://openalex.org/W4310415868","https://openalex.org/W4317212025","https://openalex.org/W6679045200","https://openalex.org/W6779551538","https://openalex.org/W6838811607","https://openalex.org/W6848776366"],"related_works":["https://openalex.org/W4365211920","https://openalex.org/W3014948380","https://openalex.org/W4380551139","https://openalex.org/W2280377497","https://openalex.org/W3174044702","https://openalex.org/W4238433571","https://openalex.org/W2967848559","https://openalex.org/W4283803360","https://openalex.org/W4317695495","https://openalex.org/W4387506531"],"abstract_inverted_index":{"Throughout":[0],"evolution,":[1],"pathogenic":[2,23,235],"viruses":[3,24],"have":[4,63,106,196],"developed":[5,64,90,197],"different":[6,26,39],"strategies":[7],"to":[8,206],"evade":[9,55,211],"the":[10,13,30,56,92,97,109,118,127,132,135,160,164,167,212,229,241],"response":[11],"of":[12,33,47,78,111,117,232,234,243],"adaptive":[14,57,214],"immune":[15,215],"system.":[16,58,216],"To":[17],"carry":[18],"out":[19],"successful":[20],"replication,":[21],"some":[22],"encode":[25],"proteins":[27,53,209],"that":[28,54,202,210,219],"manipulate":[29],"molecular":[31,100,230],"mechanisms":[32,231],"host":[34],"cells.":[35],"Currently,":[36],"there":[37],"are":[38],"bioinformatics":[40],"tools":[41],"for":[42,74,114],"virus":[43],"research;":[44],"however,":[45],"none":[46],"them":[48],"focus":[49],"on":[50,69,87,122,228],"predicting":[51,75],"viral":[52,79,208],"In":[59,102],"this":[60,76,103,191],"work,":[61],"we":[62,105,195],"a":[65,88,198],"novel":[66],"tool":[67,84,199],"based":[68,86,121],"machine":[70],"and":[71,156,187],"deep":[72],"learning":[73],"type":[77],"protein":[80],"named":[81],"VirusHound-I.":[82],"This":[83],"is":[85],"model":[89,137,168,192],"with":[91],"multilayer":[93],"perceptron":[94],"algorithm":[95],"using":[96],"dipeptide":[98],"composition":[99],"descriptor.":[101],"study,":[104],"also":[107],"demonstrated":[108],"robustness":[110],"our":[112],"strategy":[113],"data":[115],"augmentation":[116],"positive":[119],"dataset":[120],"generative":[123],"antagonistic":[124],"networks.":[125],"During":[126],"10-fold":[128],"cross-validation":[129],"step":[130],"in":[131,225,240],"training":[133],"dataset,":[134],"predictive":[136],"showed":[138,169],"0.947":[139],"accuracy,":[140,171],"0.994":[141],"precision,":[142,173],"0.943":[143],"F1":[144,175],"score,":[145,176],"0.995":[146],"specificity,":[147,178],"0.896":[148],"sensitivity,":[149,180],"0.894":[150],"kappa,":[151,182],"0.898":[152],"Matthew's":[153,184],"correlation":[154,185],"coefficient":[155,186],"0.989":[157],"AUC.":[158,189],"On":[159],"other":[161],"hand,":[162],"during":[163],"testing":[165],"step,":[166],"0.964":[170],"1.0":[172,177,188],"0.967":[174],"0.936":[179],"0.929":[181],"0.931":[183],"Taking":[190],"into":[193],"account,":[194],"called":[200],"VirusHound-I":[201,220],"makes":[203],"it":[204],"possible":[205],"predict":[207],"host's":[213],"We":[217],"believe":[218],"can":[221],"be":[222],"very":[223],"useful":[224],"accelerating":[226],"studies":[227],"evasion":[233],"viruses,":[236],"as":[237,239],"well":[238],"discovery":[242],"therapeutic":[244],"targets.":[245]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
