{"id":"https://openalex.org/W4388870164","doi":"https://doi.org/10.1093/bib/bbad410","title":"A comprehensive review and evaluation of graph neural networks for non-coding RNA and complex disease associations","display_name":"A comprehensive review and evaluation of graph neural networks for non-coding RNA and complex disease associations","publication_year":2023,"publication_date":"2023-09-22","ids":{"openalex":"https://openalex.org/W4388870164","doi":"https://doi.org/10.1093/bib/bbad410","pmid":"https://pubmed.ncbi.nlm.nih.gov/37985451"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad410","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbad410","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101610203","display_name":"Xiaowen Hu","orcid":"https://orcid.org/0000-0002-7339-3007"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaowen Hu","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University ,410075 Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University ,410075 Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007354837","display_name":"Dayun Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dayun Liu","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University ,410075 Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University ,410075 Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100628892","display_name":"Jiaxuan Zhang","orcid":"https://orcid.org/0009-0005-1931-2244"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiaxuan Zhang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of California , San Diego,92093 CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of California , San Diego,92093 CA, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032822444","display_name":"Yanhao Fan","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanhao Fan","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University ,410075 Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University ,410075 Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101180908","display_name":"Tianxiang Ouyang","orcid":"https://orcid.org/0009-0002-1951-7184"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tianxiang Ouyang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University ,410075 Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University ,410075 Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063347622","display_name":"Yue Luo","orcid":"https://orcid.org/0000-0003-3498-4821"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yue Luo","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University ,410075 Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University ,410075 Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052229178","display_name":"Yuanpeng Zhang","orcid":"https://orcid.org/0000-0003-1736-3425"},"institutions":[{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanpeng Zhang","raw_affiliation_strings":["school of software, Xinjiang University , 830046 Urumqi , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"school of software, Xinjiang University , 830046 Urumqi , China","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085608332","display_name":"Lei Deng","orcid":"https://orcid.org/0000-0003-2869-1619"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lei Deng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University ,410075 Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University ,410075 Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5085608332"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.8722,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.7535398,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"24","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.7301164865493774},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5928466320037842},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4764404892921448},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.45909151434898376},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4563683569431305},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4338526427745819},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4195752739906311},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3538803458213806},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3256520628929138},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.24955296516418457},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2081371247768402},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.12592554092407227},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11339759826660156}],"concepts":[{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.7301164865493774},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5928466320037842},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4764404892921448},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.45909151434898376},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4563683569431305},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4338526427745819},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4195752739906311},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3538803458213806},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3256520628929138},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.24955296516418457},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2081371247768402},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.12592554092407227},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11339759826660156},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad410","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbad410","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37985451","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37985451","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.44999998807907104,"id":"https://metadata.un.org/sdg/17"},{"display_name":"Industry, innovation and infrastructure","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2008773563","display_name":null,"funder_award_id":"62272490","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4765830214","display_name":null,"funder_award_id":"61972422","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":162,"referenced_works":["https://openalex.org/W1587266177","https://openalex.org/W1994389483","https://openalex.org/W2006195332","https://openalex.org/W2011312755","https://openalex.org/W2022732522","https://openalex.org/W2031593782","https://openalex.org/W2032123406","https://openalex.org/W2039816251","https://openalex.org/W2041073071","https://openalex.org/W2063993968","https://openalex.org/W2075103447","https://openalex.org/W2091161969","https://openalex.org/W2103151642","https://openalex.org/W2106029302","https://openalex.org/W2122915854","https://openalex.org/W2128768066","https://openalex.org/W2156443907","https://openalex.org/W2170539959","https://openalex.org/W2174951742","https://openalex.org/W2295598076","https://openalex.org/W2322763599","https://openalex.org/W2396917424","https://openalex.org/W2408962293","https://openalex.org/W2514148068","https://openalex.org/W2519887557","https://openalex.org/W2522381472","https://openalex.org/W2537679995","https://openalex.org/W2593390416","https://openalex.org/W2612690371","https://openalex.org/W2624837622","https://openalex.org/W2729786396","https://openalex.org/W2756148272","https://openalex.org/W2761699988","https://openalex.org/W2766950760","https://openalex.org/W2768096340","https://openalex.org/W2780228539","https://openalex.org/W2782571367","https://openalex.org/W2792962096","https://openalex.org/W2797766017","https://openalex.org/W2806774580","https://openalex.org/W2807021761","https://openalex.org/W2807104827","https://openalex.org/W2807602500","https://openalex.org/W2810107880","https://openalex.org/W2884943532","https://openalex.org/W2884957713","https://openalex.org/W2892880750","https://openalex.org/W2895679848","https://openalex.org/W2899915536","https://openalex.org/W2907492528","https://openalex.org/W2921323627","https://openalex.org/W2927302367","https://openalex.org/W2944230847","https://openalex.org/W2945827670","https://openalex.org/W2948996631","https://openalex.org/W2950834624","https://openalex.org/W2962756421","https://openalex.org/W2964015378","https://openalex.org/W2964113829","https://openalex.org/W2965857891","https://openalex.org/W2966844369","https://openalex.org/W2969465064","https://openalex.org/W2971132843","https://openalex.org/W2984577190","https://openalex.org/W2990138404","https://openalex.org/W3012562343","https://openalex.org/W3013613552","https://openalex.org/W3016469460","https://openalex.org/W3027226623","https://openalex.org/W3027405047","https://openalex.org/W3032454669","https://openalex.org/W3046099651","https://openalex.org/W3048858802","https://openalex.org/W3080501980","https://openalex.org/W3082342355","https://openalex.org/W3083606581","https://openalex.org/W3093996932","https://openalex.org/W3097794447","https://openalex.org/W3098372957","https://openalex.org/W3099929518","https://openalex.org/W3100278010","https://openalex.org/W3100848837","https://openalex.org/W3107677589","https://openalex.org/W3111163679","https://openalex.org/W3112103079","https://openalex.org/W3120162223","https://openalex.org/W3120280121","https://openalex.org/W3129061849","https://openalex.org/W3145591289","https://openalex.org/W3146565636","https://openalex.org/W3156861396","https://openalex.org/W3159261411","https://openalex.org/W3164648499","https://openalex.org/W3170286690","https://openalex.org/W3190084302","https://openalex.org/W3197001103","https://openalex.org/W3198879735","https://openalex.org/W3199461261","https://openalex.org/W3202551657","https://openalex.org/W3203619936","https://openalex.org/W3217763658","https://openalex.org/W4200043717","https://openalex.org/W4200310000","https://openalex.org/W4200432712","https://openalex.org/W4205614329","https://openalex.org/W4205843699","https://openalex.org/W4206816857","https://openalex.org/W4210548518","https://openalex.org/W4214669263","https://openalex.org/W4220710781","https://openalex.org/W4226309458","https://openalex.org/W4246271082","https://openalex.org/W4247544731","https://openalex.org/W4250836468","https://openalex.org/W4251386234","https://openalex.org/W4256049924","https://openalex.org/W4280587098","https://openalex.org/W4283209287","https://openalex.org/W4285590326","https://openalex.org/W4285743464","https://openalex.org/W4285803631","https://openalex.org/W4293476626","https://openalex.org/W4294167348","https://openalex.org/W4294811162","https://openalex.org/W4295874962","https://openalex.org/W4306860336","https://openalex.org/W4306871401","https://openalex.org/W4307440230","https://openalex.org/W4309040000","https://openalex.org/W4309645563","https://openalex.org/W4311860121","https://openalex.org/W4311995275","https://openalex.org/W4312094035","https://openalex.org/W4313388524","https://openalex.org/W4315640962","https://openalex.org/W4320857183","https://openalex.org/W4377024018","https://openalex.org/W4382400862","https://openalex.org/W4385331028","https://openalex.org/W4386316616","https://openalex.org/W4386453506","https://openalex.org/W4403853345","https://openalex.org/W6731933549","https://openalex.org/W6738964360","https://openalex.org/W6743410771","https://openalex.org/W6744557953","https://openalex.org/W6744812278","https://openalex.org/W6753751981","https://openalex.org/W6754884518","https://openalex.org/W6767282866","https://openalex.org/W6769315284","https://openalex.org/W6771247989","https://openalex.org/W6773620992","https://openalex.org/W6775441755","https://openalex.org/W6779303662","https://openalex.org/W6781492783","https://openalex.org/W6782934745","https://openalex.org/W6783056096","https://openalex.org/W6784406891","https://openalex.org/W6802532653","https://openalex.org/W6846625739","https://openalex.org/W6986874642"],"related_works":["https://openalex.org/W4297841237","https://openalex.org/W2961085424","https://openalex.org/W2735240420","https://openalex.org/W4224009465","https://openalex.org/W4306674287","https://openalex.org/W4286629047","https://openalex.org/W4242470357","https://openalex.org/W2350827212","https://openalex.org/W4205958290","https://openalex.org/W4384212932"],"abstract_inverted_index":{"Non-coding":[0],"RNAs":[1],"(ncRNAs)":[2],"play":[3],"a":[4,50,62,74,132,164],"critical":[5],"role":[6],"in":[7,30,100,115,142,155,170],"the":[8,18,85,109,143,175],"occurrence":[9],"and":[10,22,79,102,124,126,135,180],"development":[11],"of":[12,65,138,145],"numerous":[13],"human":[14],"diseases.":[15,181],"Consequently,":[16],"studying":[17],"associations":[19],"between":[20,178],"ncRNAs":[21,78,179],"diseases":[23],"has":[24],"garnered":[25],"significant":[26],"attention":[27],"from":[28],"researchers":[29,168],"recent":[31],"years.":[32],"Various":[33],"computational":[34],"methods":[35],"have":[36],"been":[37],"proposed":[38],"to":[39,77,173],"explore":[40,150],"ncRNA-disease":[41,54,69,92,117,146],"relationships,":[42],"with":[43,112],"Graph":[44],"Neural":[45],"Network":[46],"(GNN)":[47],"emerging":[48],"as":[49,163],"state-of-the-art":[51],"approach":[52],"for":[53,68,90,167],"association":[55],"prediction.":[56],"In":[57],"this":[58,156],"survey,":[59],"we":[60,72,82,107,149],"present":[61,131],"comprehensive":[63],"review":[64],"GNN-based":[66,140],"models":[67,141],"associations.":[70,147],"Firstly,":[71],"provide":[73],"detailed":[75,133],"introduction":[76],"GNNs.":[80],"Next,":[81],"delve":[83],"into":[84],"motivations":[86],"behind":[87],"adopting":[88],"GNNs":[89,114,172],"predicting":[91,116],"associations,":[93,118],"focusing":[94],"on":[95],"data":[96],"structure,":[97],"high-order":[98],"connectivity":[99],"graphs":[101],"sparse":[103],"supervision":[104],"signals.":[105],"Subsequently,":[106],"analyze":[108],"challenges":[110],"associated":[111],"using":[113],"covering":[119],"graph":[120],"construction,":[121],"feature":[122],"propagation":[123],"aggregation,":[125],"model":[127],"optimization.":[128],"We":[129],"then":[130],"summary":[134],"performance":[136],"evaluation":[137],"existing":[139],"context":[144],"Lastly,":[148],"potential":[151],"future":[152],"research":[153],"directions":[154],"rapidly":[157],"evolving":[158],"field.":[159],"This":[160],"survey":[161],"serves":[162],"valuable":[165],"resource":[166],"interested":[169],"leveraging":[171],"uncover":[174],"complex":[176],"relationships":[177]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
