{"id":"https://openalex.org/W4388423863","doi":"https://doi.org/10.1093/bib/bbad397","title":"DMFDDI: deep multimodal fusion for drug\u2013drug interaction prediction","display_name":"DMFDDI: deep multimodal fusion for drug\u2013drug interaction prediction","publication_year":2023,"publication_date":"2023-09-22","ids":{"openalex":"https://openalex.org/W4388423863","doi":"https://doi.org/10.1093/bib/bbad397","pmid":"https://pubmed.ncbi.nlm.nih.gov/37930025"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad397","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbad397","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076453110","display_name":"Yanglan Gan","orcid":"https://orcid.org/0000-0001-5931-9006"},"institutions":[{"id":"https://openalex.org/I181326427","display_name":"Donghua University","ror":"https://ror.org/035psfh38","country_code":"CN","type":"education","lineage":["https://openalex.org/I181326427"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanglan Gan","raw_affiliation_strings":["School of Computer Science and Technology, Donghua University , 2999 North Renmin Road, 201600, Shanghai , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Donghua University , 2999 North Renmin Road, 201600, Shanghai , China","institution_ids":["https://openalex.org/I181326427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058259429","display_name":"Wenxiao Liu","orcid":"https://orcid.org/0000-0003-4909-512X"},"institutions":[{"id":"https://openalex.org/I181326427","display_name":"Donghua University","ror":"https://ror.org/035psfh38","country_code":"CN","type":"education","lineage":["https://openalex.org/I181326427"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenxiao Liu","raw_affiliation_strings":["School of Computer Science and Technology, Donghua University , 2999 North Renmin Road, 201600, Shanghai , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Donghua University , 2999 North Renmin Road, 201600, Shanghai , China","institution_ids":["https://openalex.org/I181326427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102028229","display_name":"Guangwei Xu","orcid":"https://orcid.org/0000-0002-4103-1968"},"institutions":[{"id":"https://openalex.org/I181326427","display_name":"Donghua University","ror":"https://ror.org/035psfh38","country_code":"CN","type":"education","lineage":["https://openalex.org/I181326427"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guangwei Xu","raw_affiliation_strings":["School of Computer Science and Technology, Donghua University , 2999 North Renmin Road, 201600, Shanghai , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Donghua University , 2999 North Renmin Road, 201600, Shanghai , China","institution_ids":["https://openalex.org/I181326427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057832613","display_name":"Cairong Yan","orcid":"https://orcid.org/0000-0003-0313-8833"},"institutions":[{"id":"https://openalex.org/I181326427","display_name":"Donghua University","ror":"https://ror.org/035psfh38","country_code":"CN","type":"education","lineage":["https://openalex.org/I181326427"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cairong Yan","raw_affiliation_strings":["School of Computer Science and Technology, Donghua University , 2999 North Renmin Road, 201600, Shanghai , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Donghua University , 2999 North Renmin Road, 201600, Shanghai , China","institution_ids":["https://openalex.org/I181326427"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025230449","display_name":"Guobing Zou","orcid":"https://orcid.org/0000-0002-7865-8158"},"institutions":[{"id":"https://openalex.org/I113940042","display_name":"Shanghai University","ror":"https://ror.org/006teas31","country_code":"CN","type":"education","lineage":["https://openalex.org/I113940042"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Guobing Zou","raw_affiliation_strings":["School of Computer Engineering and Science, Shanghai University , 99 Shangda Road, 200444, Shanghai , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Engineering and Science, Shanghai University , 99 Shangda Road, 200444, Shanghai , China","institution_ids":["https://openalex.org/I113940042"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5025230449"],"corresponding_institution_ids":["https://openalex.org/I113940042"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":7.3775,"has_fulltext":false,"cited_by_count":38,"citation_normalized_percentile":{"value":0.97772739,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"24","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9388999938964844,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.7416362166404724},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5292956829071045},{"id":"https://openalex.org/keywords/drug-drug-interaction","display_name":"Drug-drug interaction","score":0.4958585202693939},{"id":"https://openalex.org/keywords/fusion","display_name":"Fusion","score":0.47085946798324585},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43761271238327026},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.19651448726654053},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.19025519490242004}],"concepts":[{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.7416362166404724},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5292956829071045},{"id":"https://openalex.org/C2910466267","wikidata":"https://www.wikidata.org/wiki/Q718753","display_name":"Drug-drug interaction","level":3,"score":0.4958585202693939},{"id":"https://openalex.org/C158525013","wikidata":"https://www.wikidata.org/wiki/Q2593739","display_name":"Fusion","level":2,"score":0.47085946798324585},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43761271238327026},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.19651448726654053},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.19025519490242004},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad397","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbad397","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37930025","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37930025","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5799999833106995,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G7395182650","display_name":null,"funder_award_id":"62172088","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G846785406","display_name":null,"funder_award_id":"21ZR1400400","funder_id":"https://openalex.org/F4320309612","funder_display_name":"Natural Science Foundation of Shanghai"}],"funders":[{"id":"https://openalex.org/F4320309612","display_name":"Natural Science Foundation of Shanghai","ror":null},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W1533861849","https://openalex.org/W1555148682","https://openalex.org/W2013181441","https://openalex.org/W2091439417","https://openalex.org/W2095705004","https://openalex.org/W2106417713","https://openalex.org/W2109482131","https://openalex.org/W2135037015","https://openalex.org/W2145877930","https://openalex.org/W2157331557","https://openalex.org/W2399140686","https://openalex.org/W2473876819","https://openalex.org/W2559588208","https://openalex.org/W2570516417","https://openalex.org/W2591704587","https://openalex.org/W2608239929","https://openalex.org/W2767891136","https://openalex.org/W2799720196","https://openalex.org/W2802200505","https://openalex.org/W2894175828","https://openalex.org/W2910406387","https://openalex.org/W2913015533","https://openalex.org/W2946751505","https://openalex.org/W2962711740","https://openalex.org/W2962876161","https://openalex.org/W2964015378","https://openalex.org/W2974658886","https://openalex.org/W2997021962","https://openalex.org/W3017228204","https://openalex.org/W3024894285","https://openalex.org/W3025569729","https://openalex.org/W3035011799","https://openalex.org/W3037601681","https://openalex.org/W3088680691","https://openalex.org/W3094497296","https://openalex.org/W3177765762","https://openalex.org/W3195937938","https://openalex.org/W3206601677","https://openalex.org/W4200565005","https://openalex.org/W4293492272","https://openalex.org/W4297733535","https://openalex.org/W4302286406","https://openalex.org/W4385245566","https://openalex.org/W6631190155","https://openalex.org/W6631943919","https://openalex.org/W6633204899","https://openalex.org/W6674330103","https://openalex.org/W6720672494","https://openalex.org/W6726873649","https://openalex.org/W6733741073","https://openalex.org/W6736685754","https://openalex.org/W6745511995","https://openalex.org/W6745537798","https://openalex.org/W6770446764","https://openalex.org/W6777984693","https://openalex.org/W6780085534","https://openalex.org/W6784196213"],"related_works":["https://openalex.org/W3082755771","https://openalex.org/W2395332729","https://openalex.org/W2407625558","https://openalex.org/W2485789143","https://openalex.org/W2040338448","https://openalex.org/W2415873281","https://openalex.org/W2463344692","https://openalex.org/W4248267070","https://openalex.org/W2341529717","https://openalex.org/W4251539487"],"abstract_inverted_index":{"Drug":[0],"combination":[1],"therapy":[2],"has":[3],"gradually":[4],"become":[5],"a":[6,72],"promising":[7],"treatment":[8],"strategy":[9],"for":[10,79,113],"complex":[11],"or":[12,54],"co-existing":[13],"diseases.":[14],"As":[15],"drug-drug":[16],"interactions":[17],"(DDIs)":[18],"may":[19],"cause":[20],"unexpected":[21],"adverse":[22],"drug":[23,85,103],"reactions,":[24],"DDI":[25,67,80,88,144,185],"prediction":[26],"is":[27,60,134,155,190,201],"an":[28,108,152],"important":[29],"task":[30],"in":[31,184,192],"pharmacology":[32],"and":[33,62,90,122,199],"clinical":[34],"applications.":[35],"Recently,":[36],"researchers":[37],"have":[38],"proposed":[39],"several":[40],"deep":[41,74],"learning":[42],"methods":[43,49],"to":[44,97,136,157],"predict":[45,98],"DDIs.":[46,99],"However,":[47],"these":[48],"mainly":[50],"exploit":[51],"the":[52,64,91,115,119,123,138,143,147,164,195],"chemical":[53],"biological":[55],"features":[56,94,117,125],"of":[57,66,95,118,126,142,166],"drugs,":[58],"which":[59,83],"insufficient":[61],"limits":[63],"performances":[65],"prediction.":[68,186],"Here,":[69],"we":[70,106,168],"propose":[71],"new":[73],"multimodal":[75,148],"feature":[76,149],"fusion":[77,150],"framework":[78],"prediction,":[81],"DMFDDI,":[82,167],"fuses":[84],"molecular":[86,104,120],"graph,":[87],"network":[89,112,133],"biochemical":[92],"similarity":[93],"drugs":[96],"To":[100,162],"fully":[101],"extract":[102],"structure,":[105],"introduce":[107],"attention-gated":[109],"graph":[110,121,131],"neural":[111],"capturing":[114],"global":[116],"local":[124],"each":[127],"atom.":[128],"A":[129],"sparse":[130],"convolution":[132],"introduced":[135],"learn":[137],"topological":[139],"structure":[140],"information":[141],"network.":[145],"In":[146],"module,":[151],"attention":[153],"mechanism":[154],"used":[156],"efficiently":[158],"fuse":[159],"different":[160],"features.":[161],"validate":[163],"performance":[165,183],"compare":[169],"it":[170,200],"with":[171],"10":[172],"state-of-the-art":[173],"methods.":[174],"The":[175],"comparison":[176],"results":[177],"demonstrate":[178],"that":[179],"DMFDDI":[180,189],"achieves":[181],"better":[182],"Our":[187],"method":[188],"implemented":[191],"Python":[193],"using":[194],"Pytorch":[196],"machine-learning":[197],"library,":[198],"freely":[202],"available":[203],"at":[204],"https://github.com/DHUDEBLab/DMFDDI.git.":[205]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":24},{"year":2024,"cited_by_count":10}],"updated_date":"2026-05-02T08:42:23.175194","created_date":"2025-10-10T00:00:00"}
