{"id":"https://openalex.org/W4388423852","doi":"https://doi.org/10.1093/bib/bbad393","title":"MVML-MPI: Multi-View Multi-Label Learning for Metabolic Pathway Inference","display_name":"MVML-MPI: Multi-View Multi-Label Learning for Metabolic Pathway Inference","publication_year":2023,"publication_date":"2023-09-22","ids":{"openalex":"https://openalex.org/W4388423852","doi":"https://doi.org/10.1093/bib/bbad393","pmid":"https://pubmed.ncbi.nlm.nih.gov/37930024"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad393","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad393","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad393/52778048/bbad393.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad393/52778048/bbad393.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100667632","display_name":"Xiaoyi Liu","orcid":"https://orcid.org/0009-0006-5862-2031"},"institutions":[{"id":"https://openalex.org/I155781252","display_name":"University of South Carolina","ror":"https://ror.org/02b6qw903","country_code":"US","type":"education","lineage":["https://openalex.org/I155781252"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaoyi Liu","raw_affiliation_strings":["Computer Science and Engineering, University of South Carolina , Columbia 29208 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, University of South Carolina , Columbia 29208 , USA","institution_ids":["https://openalex.org/I155781252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081832999","display_name":"Hongpeng Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I155781252","display_name":"University of South Carolina","ror":"https://ror.org/02b6qw903","country_code":"US","type":"education","lineage":["https://openalex.org/I155781252"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongpeng Yang","raw_affiliation_strings":["Computer Science and Engineering, University of South Carolina , Columbia 29208 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, University of South Carolina , Columbia 29208 , USA","institution_ids":["https://openalex.org/I155781252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088075730","display_name":"Chengwei Ai","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengwei Ai","raw_affiliation_strings":["Computer Science and Engineering, Central South University , Changsha 410083 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Central South University , Changsha 410083 , China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100688233","display_name":"Yijie Ding","orcid":"https://orcid.org/0000-0003-2911-7643"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]},{"id":"https://openalex.org/I4210123686","display_name":"Quzhou University","ror":"https://ror.org/024nfx323","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210123686"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yijie Ding","raw_affiliation_strings":["Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China , Quzhou 324000 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China , Quzhou 324000 , China","institution_ids":["https://openalex.org/I4210123686","https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100702161","display_name":"Fei Guo","orcid":"https://orcid.org/0000-0001-8346-0798"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fei Guo","raw_affiliation_strings":["Computer Science and Engineering, Central South University , Changsha 410083 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Central South University , Changsha 410083 , China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001619694","display_name":"Jijun Tang","orcid":"https://orcid.org/0000-0002-6377-536X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jijun Tang","raw_affiliation_strings":["Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences , Nanshan 518055 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences , Nanshan 518055 , China","institution_ids":["https://openalex.org/I4210145761","https://openalex.org/I19820366"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5001619694","https://openalex.org/A5100688233","https://openalex.org/A5100702161"],"corresponding_institution_ids":["https://openalex.org/I139660479","https://openalex.org/I150229711","https://openalex.org/I19820366","https://openalex.org/I4210123686","https://openalex.org/I4210145761"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.0182,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.86987902,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"24","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7740689516067505},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7128316760063171},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4440222680568695},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3669270873069763}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7740689516067505},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7128316760063171},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4440222680568695},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3669270873069763}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad393","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad393","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad393/52778048/bbad393.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37930024","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37930024","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbad393","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad393","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad393/52778048/bbad393.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2147514142","display_name":null,"funder_award_id":"62172296","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2204089524","display_name":null,"funder_award_id":"LY23F020003","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2577686465","display_name":null,"funder_award_id":"2021YFC2100700","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2708924437","display_name":null,"funder_award_id":"2021YFC2100700","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G4141758315","display_name":"\u57fa\u4e8e\u6df1\u5ea6\u591a\u6838\u5b66\u4e60\u6846\u67b6\u7684\u591a\u6a21\u6001\u836f\u7269\u526f\u4f5c\u7528\u8bc6\u522b\u65b9\u6cd5\u7814\u7a76","funder_award_id":"LY23F020003","funder_id":"https://openalex.org/F4320338464","funder_display_name":"Natural Science Foundation of Zhejiang Province"},{"id":"https://openalex.org/G4975873869","display_name":null,"funder_award_id":"623222215","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7037578608","display_name":null,"funder_award_id":"62172076","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321514","display_name":"Central South University","ror":"https://ror.org/00f1zfq44"},{"id":"https://openalex.org/F4320335581","display_name":"Young Scientists Fund","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320338464","display_name":"Natural Science Foundation of Zhejiang Province","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4388423852.pdf","grobid_xml":"https://content.openalex.org/works/W4388423852.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W1981885395","https://openalex.org/W1988037271","https://openalex.org/W2047583216","https://openalex.org/W2064675550","https://openalex.org/W2101511465","https://openalex.org/W2113531097","https://openalex.org/W2200017991","https://openalex.org/W2221103459","https://openalex.org/W2344676116","https://openalex.org/W2515827931","https://openalex.org/W2529996553","https://openalex.org/W2574386421","https://openalex.org/W2574522191","https://openalex.org/W2590019597","https://openalex.org/W2743063996","https://openalex.org/W2766352633","https://openalex.org/W2787895813","https://openalex.org/W2860192827","https://openalex.org/W2904107098","https://openalex.org/W2908663744","https://openalex.org/W2950095536","https://openalex.org/W2965590414","https://openalex.org/W2968734407","https://openalex.org/W2997158276","https://openalex.org/W3004468049","https://openalex.org/W3047011765","https://openalex.org/W3089740292","https://openalex.org/W3096561213","https://openalex.org/W3103373754","https://openalex.org/W3119988366","https://openalex.org/W3128647010","https://openalex.org/W3134142139","https://openalex.org/W3161810785","https://openalex.org/W3176821806","https://openalex.org/W3189700398","https://openalex.org/W3193026185","https://openalex.org/W3199041041","https://openalex.org/W4200268969","https://openalex.org/W4210483668","https://openalex.org/W4214621766","https://openalex.org/W4226149298","https://openalex.org/W4226417391","https://openalex.org/W4280602833","https://openalex.org/W4286210881","https://openalex.org/W4292982348","https://openalex.org/W4294663369","https://openalex.org/W4304084100","https://openalex.org/W4308430012","https://openalex.org/W4313236609","https://openalex.org/W4313800388","https://openalex.org/W6631190155","https://openalex.org/W6635610719","https://openalex.org/W6685265622","https://openalex.org/W6736685754","https://openalex.org/W6769757936","https://openalex.org/W6788480193","https://openalex.org/W6801465301","https://openalex.org/W6839318949","https://openalex.org/W6842268074"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4313488044","https://openalex.org/W3209574120","https://openalex.org/W4312192474","https://openalex.org/W4210805261"],"abstract_inverted_index":{"Development":[0],"of":[1,22,39,56,145,158,167,182],"robust":[2],"and":[3,12,119,127,130,147,160,178,186],"effective":[4],"strategies":[5],"for":[6,73],"synthesizing":[7],"new":[8],"compounds,":[9,57],"drug":[10],"targeting":[11],"constructing":[13],"GEnome-scale":[14],"Metabolic":[15,74],"models":[16],"(GEMs)":[17],"requires":[18],"a":[19,43,66,105,114],"deep":[20],"understanding":[21],"the":[23,37,53,83,122,142,156,165,180],"underlying":[24,188],"biological":[25],"processes.":[26],"A":[27],"critical":[28],"step":[29],"in":[30,41,59,87,174],"achieving":[31],"this":[32,189],"goal":[33],"is":[34],"accurately":[35,117],"identifying":[36],"categories":[38],"pathways":[40,129,149],"which":[42,171],"compound":[44,85,91],"participated.":[45],"However,":[46],"current":[47,134],"machine":[48,135],"learning-based":[49,136],"methods":[50],"often":[51],"overlook":[52],"multifaceted":[54],"nature":[55],"resulting":[58],"inaccurate":[60],"pathway":[61,169],"predictions.":[62],"Therefore,":[63],"we":[64,98],"present":[65],"novel":[67],"framework":[68],"on":[69,141],"Multi-View":[70],"Multi-Label":[71],"Learning":[72],"Pathway":[75],"Inference,":[76],"hereby":[77],"named":[78],"MVML-MPI.":[79],"First,":[80],"MVML-MPI":[81,116,151,159],"learns":[82],"distinct":[84],"representations":[86],"parallel":[88],"with":[89],"corresponding":[90],"encoders":[92],"to":[93,108,163],"fully":[94],"extract":[95],"features.":[96],"Subsequently,":[97],"propose":[99],"an":[100],"attention-based":[101],"mechanism":[102],"that":[103],"offers":[104],"fusion":[106],"module":[107],"complement":[109],"these":[110],"multi-view":[111],"representations.":[112],"As":[113],"result,":[115],"represents":[118],"effectively":[120],"captures":[121],"complex":[123],"relationship":[124],"between":[125],"compounds":[126,177],"metabolic":[128,168],"distinguishes":[131],"itself":[132],"from":[133],"methods.":[137],"In":[138],"experiments":[139],"conducted":[140],"Kyoto":[143],"Encyclopedia":[144],"Genes":[146],"Genomes":[148],"dataset,":[150],"outperformed":[152],"state-of-the-art":[153],"methods,":[154],"demonstrating":[155],"superiority":[157],"its":[161],"potential":[162],"utilize":[164],"field":[166],"design,":[170],"can":[172],"aid":[173],"optimizing":[175],"drug-like":[176],"facilitating":[179],"development":[181],"GEMs.":[183],"The":[184],"code":[185],"data":[187],"article":[190],"are":[191],"freely":[192],"available":[193],"at":[194],"https://github.com/guofei-tju/MVML-MPI.":[195],"Contact:":[196],"jtang@cse.sc.edu,":[197],"guofei@csu.edu.com":[198],"or":[199],"wuxi_dyj@csj.uestc.edu.cn.":[200]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":6}],"updated_date":"2026-07-13T07:31:44.756512","created_date":"2025-10-10T00:00:00"}
