{"id":"https://openalex.org/W4388423586","doi":"https://doi.org/10.1093/bib/bbad387","title":"COMO: a pipeline for multi-omics data integration in metabolic modeling and drug discovery","display_name":"COMO: a pipeline for multi-omics data integration in metabolic modeling and drug discovery","publication_year":2023,"publication_date":"2023-09-22","ids":{"openalex":"https://openalex.org/W4388423586","doi":"https://doi.org/10.1093/bib/bbad387"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad387","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad387","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad387/52762320/bbad387.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad387/52762320/bbad387.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060920101","display_name":"Brandt Bessell","orcid":"https://orcid.org/0000-0003-2334-8790"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brandt Bessell","raw_affiliation_strings":["Department of Biochemistry, University of Nebraska-Lincoln , NE ,","Department of Biochemistry, University of Nebraska-Lincoln, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln , NE ,","institution_ids":["https://openalex.org/I114395901"]},{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln, NE, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091926298","display_name":"Josh Loecker","orcid":null},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Josh Loecker","raw_affiliation_strings":["Department of Biochemistry, University of Nebraska-Lincoln , NE ,","Department of Biochemistry, University of Nebraska-Lincoln, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln , NE ,","institution_ids":["https://openalex.org/I114395901"]},{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln, NE, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044412948","display_name":"Zhongyuan Zhao","orcid":"https://orcid.org/0000-0002-8218-7723"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhongyuan Zhao","raw_affiliation_strings":["Department of Biochemistry, University of Nebraska-Lincoln , NE ,","Department of Biochemistry, University of Nebraska-Lincoln, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln , NE ,","institution_ids":["https://openalex.org/I114395901"]},{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln, NE, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015223718","display_name":"Sara Sadat Aghamiri","orcid":"https://orcid.org/0000-0003-4440-7059"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sara Sadat Aghamiri","raw_affiliation_strings":["Department of Biochemistry, University of Nebraska-Lincoln , NE ,","Department of Biochemistry, University of Nebraska-Lincoln, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln , NE ,","institution_ids":["https://openalex.org/I114395901"]},{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln, NE, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067842811","display_name":"Sabyasachi Mohanty","orcid":"https://orcid.org/0000-0001-7099-5750"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sabyasachi Mohanty","raw_affiliation_strings":["Department of Biochemistry, University of Nebraska-Lincoln , NE ,","Department of Biochemistry, University of Nebraska-Lincoln, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln , NE ,","institution_ids":["https://openalex.org/I114395901"]},{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln, NE, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063816662","display_name":"Rada Amin","orcid":"https://orcid.org/0000-0002-9907-1831"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rada Amin","raw_affiliation_strings":["Department of Biochemistry, University of Nebraska-Lincoln , NE ,","Department of Biochemistry, University of Nebraska-Lincoln, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln , NE ,","institution_ids":["https://openalex.org/I114395901"]},{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln, NE, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073371703","display_name":"Tom\u00e1\u0161 Helikar","orcid":"https://orcid.org/0000-0003-3653-1906"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tom\u00e1\u0161 Helikar","raw_affiliation_strings":["Department of Biochemistry, University of Nebraska-Lincoln , NE ,","Department of Biochemistry, University of Nebraska-Lincoln, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln , NE ,","institution_ids":["https://openalex.org/I114395901"]},{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln, NE, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035054695","display_name":"Bhanwar Lal Puniya","orcid":"https://orcid.org/0000-0001-7528-3568"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Bhanwar Lal Puniya","raw_affiliation_strings":["Department of Biochemistry, University of Nebraska-Lincoln , NE ,","Department of Biochemistry, University of Nebraska-Lincoln, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln , NE ,","institution_ids":["https://openalex.org/I114395901"]},{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln, NE, USA","institution_ids":["https://openalex.org/I114395901"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5035054695","https://openalex.org/A5073371703"],"corresponding_institution_ids":["https://openalex.org/I114395901"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.3703,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.81518968,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"24","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7719173431396484},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.7076146602630615},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6442403793334961},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5448049306869507},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.5260631442070007},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5099502801895142},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4277648329734802},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3699777126312256},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.26704272627830505},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18675607442855835}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7719173431396484},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.7076146602630615},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6442403793334961},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5448049306869507},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.5260631442070007},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5099502801895142},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4277648329734802},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3699777126312256},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.26704272627830505},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18675607442855835},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad387","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad387","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad387/52762320/bbad387.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10627799","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10627799","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10627799/pdf/bbad387.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbad387","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad387","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad387/52762320/bbad387.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G1569656834","display_name":null,"funder_award_id":"#R35GM119770","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2798184805","display_name":null,"funder_award_id":"FA4600-12-D-9000","funder_id":"https://openalex.org/F4320306078","funder_display_name":"U.S. Department of Defense"},{"id":"https://openalex.org/G4036087083","display_name":null,"funder_award_id":"FA4600-18-D-9001","funder_id":"https://openalex.org/F4320332925","funder_display_name":"Defense Health Agency"},{"id":"https://openalex.org/G438216982","display_name":null,"funder_award_id":"35GM119770","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5929422235","display_name":null,"funder_award_id":"FA4600-12-D-9000","funder_id":"https://openalex.org/F4320332925","funder_display_name":"Defense Health Agency"},{"id":"https://openalex.org/G7320824963","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306078","funder_display_name":"U.S. Department of Defense"},{"id":"https://openalex.org/G7731648302","display_name":null,"funder_award_id":"R35GM119770","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306078","display_name":"U.S. Department of Defense","ror":"https://ror.org/0447fe631"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332504","display_name":"Uniformed Services University of the Health Sciences","ror":"https://ror.org/04r3kq386"},{"id":"https://openalex.org/F4320332925","display_name":"Defense Health Agency","ror":"https://ror.org/03df8gj37"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4388423586.pdf"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W30494026","https://openalex.org/W1561311556","https://openalex.org/W1665355332","https://openalex.org/W1914321484","https://openalex.org/W1968197386","https://openalex.org/W1974752603","https://openalex.org/W1982698704","https://openalex.org/W1995569878","https://openalex.org/W2009282793","https://openalex.org/W2014306428","https://openalex.org/W2046772180","https://openalex.org/W2048465561","https://openalex.org/W2077771104","https://openalex.org/W2078901104","https://openalex.org/W2089190709","https://openalex.org/W2118258530","https://openalex.org/W2121404287","https://openalex.org/W2132218677","https://openalex.org/W2151598167","https://openalex.org/W2162790428","https://openalex.org/W2415238422","https://openalex.org/W2604527271","https://openalex.org/W2612467560","https://openalex.org/W2625779183","https://openalex.org/W2749613778","https://openalex.org/W2762019694","https://openalex.org/W2766145247","https://openalex.org/W2767891136","https://openalex.org/W2789128799","https://openalex.org/W2807625668","https://openalex.org/W2820849818","https://openalex.org/W2849483034","https://openalex.org/W2889326414","https://openalex.org/W2892039303","https://openalex.org/W2923278922","https://openalex.org/W2928665623","https://openalex.org/W2950093550","https://openalex.org/W2951635356","https://openalex.org/W2955088273","https://openalex.org/W2979313800","https://openalex.org/W3010629926","https://openalex.org/W3014499862","https://openalex.org/W3015627776","https://openalex.org/W3016499228","https://openalex.org/W3016718220","https://openalex.org/W3044145717","https://openalex.org/W3125752225","https://openalex.org/W3164162829","https://openalex.org/W3170390374","https://openalex.org/W3200397230","https://openalex.org/W3204325474","https://openalex.org/W3210331473","https://openalex.org/W3210402627","https://openalex.org/W3213751857","https://openalex.org/W3214501274","https://openalex.org/W4231384169","https://openalex.org/W4283204847","https://openalex.org/W4306181506","https://openalex.org/W4307187936","https://openalex.org/W4364352451","https://openalex.org/W4379966525","https://openalex.org/W6601228544","https://openalex.org/W6633731855","https://openalex.org/W6640329338","https://openalex.org/W6682397535","https://openalex.org/W6716419022","https://openalex.org/W6739852251","https://openalex.org/W6765039832"],"related_works":["https://openalex.org/W177137871","https://openalex.org/W4403685181","https://openalex.org/W2924366642","https://openalex.org/W4392558563","https://openalex.org/W3159101980","https://openalex.org/W3173875945","https://openalex.org/W2966125521","https://openalex.org/W3003192283","https://openalex.org/W2996736193","https://openalex.org/W2909364225"],"abstract_inverted_index":{"Abstract":[0],"Identifying":[1],"potential":[2,185],"drug":[3,45,52,146],"targets":[4,147,198],"using":[5],"metabolic":[6,41,94,133,145,177],"modeling":[7,11],"requires":[8],"integrating":[9],"multiple":[10],"methods":[12],"and":[13,47,65,84,88,104,119,140,151,169,203],"heterogeneous":[14],"biological":[15],"datasets,":[16],"which":[17,138],"can":[18,55,157,220],"be":[19,56,158,221],"challenging":[20],"without":[21],"efficient":[22],"tools.":[23],"We":[24],"developed":[25],"Constraint-based":[26],"Optimization":[27],"of":[28,82,135,190,209],"Metabolic":[29],"Objectives":[30],"(COMO),":[31],"a":[32,59,70,76,105,124],"user-friendly":[33],"pipeline":[34,130,182,212],"that":[35],"integrates":[36],"multi-omics":[37],"data":[38,49],"processing,":[39],"context-specific":[40,93],"model":[42,102],"development,":[43],"simulations,":[44],"databases":[46],"disease":[48,121,175],"to":[50,91,115,131,143,160,186,199],"aid":[51],"discovery.":[53],"COMO":[54,112,156,211],"installed":[57],"as":[58],"Docker":[60,218],"Image":[61],"or":[62,166],"with":[63],"Conda":[64],"includes":[66],"intuitive":[67],"instructions":[68],"within":[69],"Jupyter":[71],"Lab":[72],"environment.":[73],"It":[74],"provides":[75],"comprehensive":[77],"solution":[78],"for":[79,101,108,148,163,172],"the":[80,129,184,188,191,210],"integration":[81],"bulk":[83],"single-cell":[85],"RNA-seq,":[86],"microarrays":[87],"proteomics":[89],"outputs":[90],"develop":[92],"models.":[95],"Using":[96],"public":[97],"databases,":[98],"open-source":[99],"solutions":[100],"construction":[103],"streamlined":[106],"approach":[107],"predicting":[109],"repurposable":[110],"drugs,":[111],"enables":[113],"researchers":[114],"investigate":[116],"low-cost":[117],"alternatives":[118],"novel":[120],"treatments.":[122],"As":[123],"case":[125],"study,":[126],"we":[127],"used":[128,159],"construct":[132,161],"models":[134,162],"B":[136],"cells,":[137],"simulate":[139],"analyze":[141],"them":[142],"predict":[144],"rheumatoid":[149],"arthritis":[150],"systemic":[152],"lupus":[153],"erythematosus,":[154],"respectively.":[155],"any":[164,173],"cell":[165],"tissue":[167],"type":[168],"identify":[170],"drugs":[171],"human":[174],"where":[176],"inhibition":[178],"is":[179,213],"relevant.":[180],"The":[181,206,217],"has":[183],"improve":[187],"health":[189],"global":[192],"community":[193],"cost-effectively":[194],"by":[195],"providing":[196],"high-confidence":[197],"pursue":[200],"in":[201],"preclinical":[202],"clinical":[204],"studies.":[205],"source":[207],"code":[208],"available":[214],"at":[215,223],"https://github.com/HelikarLab/COMO.":[216],"image":[219],"pulled":[222],"https://github.com/HelikarLab/COMO/pkgs/container/como.":[224]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2023-11-07T00:00:00"}
