{"id":"https://openalex.org/W37930022","doi":"https://doi.org/10.1093/bib/bbad387","title":"\u30e1\u30c7\u30a3\u30a2\u30fb\u30ea\u30c6\u30e9\u30b7\u30fc : \u30a4\u30f3\u30bf\u30fc\u30cd\u30c3\u30c8\u306e\u6559\u80b2\u5229\u7528\u3092\u8003\u3048\u308b","display_name":"\u30e1\u30c7\u30a3\u30a2\u30fb\u30ea\u30c6\u30e9\u30b7\u30fc : \u30a4\u30f3\u30bf\u30fc\u30cd\u30c3\u30c8\u306e\u6559\u80b2\u5229\u7528\u3092\u8003\u3048\u308b","publication_year":1998,"publication_date":"1998-02-09","ids":{"openalex":"https://openalex.org/W37930022","doi":"https://doi.org/10.1093/bib/bbad387","mag":"37930022"},"language":"en","primary_location":{"id":"mag:37930022","is_oa":false,"landing_page_url":"http://ci.nii.ac.jp/naid/110004724913","pdf_url":null,"source":{"id":"https://openalex.org/S4210197683","display_name":"Medical Entomology and Zoology","issn_l":"0424-7086","issn":["0424-7086","2185-5609"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319750","host_organization_name":"Japan Society of Medical Entomology and Zoology","host_organization_lineage":["https://openalex.org/P4310319750"],"host_organization_lineage_names":["Japan Society of Medical Entomology and Zoology"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},"type":"article","indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057934699","display_name":"\u771f\u6c99\u5b50 \u677e\u539f","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"\u771f\u6c99\u5b50 \u677e\u539f","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5057934699"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00320703,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"20","issue":"20","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.3776000142097473,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.3776000142097473,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.3776000142097473,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.3720000088214874,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3029899597167969}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3029899597167969}],"mesh":[],"locations_count":1,"locations":[{"id":"mag:37930022","is_oa":false,"landing_page_url":"http://ci.nii.ac.jp/naid/110004724913","pdf_url":null,"source":{"id":"https://openalex.org/S4210197683","display_name":"Medical Entomology and Zoology","issn_l":"0424-7086","issn":["0424-7086","2185-5609"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319750","host_organization_name":"Japan Society of Medical Entomology and Zoology","host_organization_lineage":["https://openalex.org/P4310319750"],"host_organization_lineage_names":["Japan Society of Medical Entomology and Zoology"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W30494026","https://openalex.org/W2151598167","https://openalex.org/W2415238422"],"related_works":[],"abstract_inverted_index":{"Identifying":[0],"potential":[1,184],"drug":[2,44,51,145],"targets":[3,146,197],"using":[4],"metabolic":[5,40,93,132,144,176],"modeling":[6,10],"requires":[7],"integrating":[8],"multiple":[9],"methods":[11],"and":[12,46,64,83,87,103,118,139,150,168,202],"heterogeneous":[13],"biological":[14],"datasets,":[15],"which":[16,137],"can":[17,54,156,219],"be":[18,55,157,220],"challenging":[19],"without":[20],"efficient":[21],"tools.":[22],"We":[23],"developed":[24],"Constraint-based":[25],"Optimization":[26],"of":[27,81,134,189,208],"Metabolic":[28],"Objectives":[29],"(COMO),":[30],"a":[31,58,69,75,104,123],"user-friendly":[32],"pipeline":[33,129,181,211],"that":[34],"integrates":[35],"multi-omics":[36],"data":[37,48],"processing,":[38],"context-specific":[39,92],"model":[41,101],"development,":[42],"simulations,":[43],"databases":[45],"disease":[47,120,174],"to":[49,90,114,130,142,159,185,198],"aid":[50],"discovery.":[52],"COMO":[53,111,155,210],"installed":[56],"as":[57],"Docker":[59,217],"Image":[60],"or":[61,165],"with":[62],"Conda":[63],"includes":[65],"intuitive":[66],"instructions":[67],"within":[68],"Jupyter":[70],"Lab":[71],"environment.":[72],"It":[73],"provides":[74],"comprehensive":[76],"solution":[77],"for":[78,100,107,147,162,171],"the":[79,128,183,187,190,209],"integration":[80],"bulk":[82],"single-cell":[84],"RNA-seq,":[85],"microarrays":[86],"proteomics":[88],"outputs":[89],"develop":[91],"models.":[94],"Using":[95],"public":[96],"databases,":[97],"open-source":[98],"solutions":[99],"construction":[102],"streamlined":[105],"approach":[106],"predicting":[108],"repurposable":[109],"drugs,":[110],"enables":[112],"researchers":[113],"investigate":[115],"low-cost":[116],"alternatives":[117],"novel":[119],"treatments.":[121],"As":[122],"case":[124],"study,":[125],"we":[126],"used":[127,158],"construct":[131,160],"models":[133,161],"B":[135],"cells,":[136],"simulate":[138],"analyze":[140],"them":[141],"predict":[143],"rheumatoid":[148],"arthritis":[149],"systemic":[151],"lupus":[152],"erythematosus,":[153],"respectively.":[154],"any":[163,172],"cell":[164],"tissue":[166],"type":[167],"identify":[169],"drugs":[170],"human":[173],"where":[175],"inhibition":[177],"is":[178,212],"relevant.":[179],"The":[180,205,216],"has":[182],"improve":[186],"health":[188],"global":[191],"community":[192],"cost-effectively":[193],"by":[194],"providing":[195],"high-confidence":[196],"pursue":[199],"in":[200],"preclinical":[201],"clinical":[203],"studies.":[204],"source":[206],"code":[207],"available":[213],"at":[214,222],"https://github.com/HelikarLab/COMO.":[215],"image":[218],"pulled":[221],"https://github.com/HelikarLab/COMO/pkgs/container/como.":[223]},"counts_by_year":[],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2016-06-24T00:00:00"}
