{"id":"https://openalex.org/W4387865568","doi":"https://doi.org/10.1093/bib/bbad376","title":"Protein\u2013protein interaction and site prediction using transfer learning","display_name":"Protein\u2013protein interaction and site prediction using transfer learning","publication_year":2023,"publication_date":"2023-09-22","ids":{"openalex":"https://openalex.org/W4387865568","doi":"https://doi.org/10.1093/bib/bbad376","pmid":"https://pubmed.ncbi.nlm.nih.gov/37870286"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad376","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad376","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad376/52346120/bbad376.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad376/52346120/bbad376.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011625427","display_name":"Tuoyu Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210167153","display_name":"Biotechnology Research Institute","ror":"https://ror.org/05vm76w92","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210167153"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tuoyu Liu","raw_affiliation_strings":["Biotechnology Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210167153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083438552","display_name":"Han Gao","orcid":"https://orcid.org/0000-0001-6547-1557"},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Han Gao","raw_affiliation_strings":["Institute of Animal Science, Chinese Academy of Agricultural Sciences , Beijing 100193 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Animal Science, Chinese Academy of Agricultural Sciences , Beijing 100193 , China","institution_ids":["https://openalex.org/I4210138501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100578181","display_name":"Xiaopu Ren","orcid":null},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210167153","display_name":"Biotechnology Research Institute","ror":"https://ror.org/05vm76w92","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210167153"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaopu Ren","raw_affiliation_strings":["Biotechnology Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210167153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102600976","display_name":"Guoshun Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guoshun Xu","raw_affiliation_strings":["Institute of Animal Science, Chinese Academy of Agricultural Sciences , Beijing 100193 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Animal Science, Chinese Academy of Agricultural Sciences , Beijing 100193 , China","institution_ids":["https://openalex.org/I4210138501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114377956","display_name":"Bo Liu","orcid":"https://orcid.org/0000-0003-1685-7968"},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210167153","display_name":"Biotechnology Research Institute","ror":"https://ror.org/05vm76w92","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210167153"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Liu","raw_affiliation_strings":["Biotechnology Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210167153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043789811","display_name":"Ningfeng Wu","orcid":"https://orcid.org/0000-0002-7782-9920"},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210167153","display_name":"Biotechnology Research Institute","ror":"https://ror.org/05vm76w92","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210167153"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ningfeng Wu","raw_affiliation_strings":["Biotechnology Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210167153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032931209","display_name":"Huiying Luo","orcid":"https://orcid.org/0000-0002-4596-2639"},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huiying Luo","raw_affiliation_strings":["Institute of Animal Science, Chinese Academy of Agricultural Sciences , Beijing 100193 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Animal Science, Chinese Academy of Agricultural Sciences , Beijing 100193 , China","institution_ids":["https://openalex.org/I4210138501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100344853","display_name":"Yuan Wang","orcid":"https://orcid.org/0000-0002-4645-3916"},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuan Wang","raw_affiliation_strings":["Institute of Animal Science, Chinese Academy of Agricultural Sciences , Beijing 100193 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Animal Science, Chinese Academy of Agricultural Sciences , Beijing 100193 , China","institution_ids":["https://openalex.org/I4210138501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045650547","display_name":"Tao Tu","orcid":"https://orcid.org/0000-0002-1661-0386"},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Tu","raw_affiliation_strings":["Institute of Animal Science, Chinese Academy of Agricultural Sciences , Beijing 100193 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Animal Science, Chinese Academy of Agricultural Sciences , Beijing 100193 , China","institution_ids":["https://openalex.org/I4210138501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008371533","display_name":"Bin Yao","orcid":"https://orcid.org/0000-0002-5425-3260"},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Yao","raw_affiliation_strings":["Institute of Animal Science, Chinese Academy of Agricultural Sciences , Beijing 100193 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Animal Science, Chinese Academy of Agricultural Sciences , Beijing 100193 , China","institution_ids":["https://openalex.org/I4210138501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057131874","display_name":"Feifei Guan","orcid":"https://orcid.org/0000-0003-3421-2768"},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210167153","display_name":"Biotechnology Research Institute","ror":"https://ror.org/05vm76w92","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210167153"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Feifei Guan","raw_affiliation_strings":["Biotechnology Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210167153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038066788","display_name":"Yue Teng","orcid":"https://orcid.org/0000-0002-7548-5618"},"institutions":[{"id":"https://openalex.org/I2802541053","display_name":"Academy of Military Medical Sciences","ror":"https://ror.org/02bv3c993","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053"]},{"id":"https://openalex.org/I4210134982","display_name":"Institute of Microbiology","ror":"https://ror.org/047yhep71","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210134982"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yue Teng","raw_affiliation_strings":["State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences , Beijing 100071 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences , Beijing 100071 , China","institution_ids":["https://openalex.org/I2802541053","https://openalex.org/I4210134982"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052310341","display_name":"Huoqing Huang","orcid":"https://orcid.org/0000-0003-3197-6631"},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Huoqing Huang","raw_affiliation_strings":["Institute of Animal Science, Chinese Academy of Agricultural Sciences , Beijing 100193 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Animal Science, Chinese Academy of Agricultural Sciences , Beijing 100193 , China","institution_ids":["https://openalex.org/I4210138501"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011692902","display_name":"Jian Tian","orcid":"https://orcid.org/0000-0002-9997-6518"},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210167153","display_name":"Biotechnology Research Institute","ror":"https://ror.org/05vm76w92","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210167153"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jian Tian","raw_affiliation_strings":["Biotechnology Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , China","Institute of Animal Science, Chinese Academy of Agricultural Sciences , Beijing 100193 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210167153"]},{"raw_affiliation_string":"Institute of Animal Science, Chinese Academy of Agricultural Sciences , Beijing 100193 , China","institution_ids":["https://openalex.org/I4210138501"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5011692902","https://openalex.org/A5038066788","https://openalex.org/A5052310341","https://openalex.org/A5057131874"],"corresponding_institution_ids":["https://openalex.org/I2802541053","https://openalex.org/I4210134982","https://openalex.org/I4210138501","https://openalex.org/I4210167153"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.6145,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.83780708,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"24","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7632086277008057},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.5854835510253906},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5579551458358765},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5176142454147339},{"id":"https://openalex.org/keywords/transfer-of-learning","display_name":"Transfer of learning","score":0.5155829787254333},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.4772357940673828},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4725372791290283},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.46869349479675293},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.41923412680625916},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32160356640815735},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13793650269508362},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07157739996910095},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.059589773416519165}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7632086277008057},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.5854835510253906},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5579551458358765},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5176142454147339},{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.5155829787254333},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.4772357940673828},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4725372791290283},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.46869349479675293},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.41923412680625916},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32160356640815735},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13793650269508362},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07157739996910095},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.059589773416519165},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad376","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad376","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad376/52346120/bbad376.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37870286","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37870286","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbad376","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad376","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad376/52346120/bbad376.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6000000238418579}],"awards":[{"id":"https://openalex.org/G1868416224","display_name":null,"funder_award_id":"2022YFE0135300","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G2601717526","display_name":null,"funder_award_id":"CAAS-ZDRW202304","funder_id":"https://openalex.org/F4320335848","funder_display_name":"Agricultural Science and Technology Innovation Program"},{"id":"https://openalex.org/G3242354017","display_name":null,"funder_award_id":"CARS-41","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3772691703","display_name":null,"funder_award_id":"CARS-41","funder_id":"https://openalex.org/F4320323155","funder_display_name":"Chinese Academy of Agricultural Sciences"},{"id":"https://openalex.org/G4495568545","display_name":null,"funder_award_id":"CARS-41","funder_id":"https://openalex.org/F4320335848","funder_display_name":"Agricultural Science and Technology Innovation Program"},{"id":"https://openalex.org/G5464361591","display_name":null,"funder_award_id":"CAAS-ZDRW202304","funder_id":"https://openalex.org/F4320323155","funder_display_name":"Chinese Academy of Agricultural Sciences"},{"id":"https://openalex.org/G6519103774","display_name":null,"funder_award_id":"32222082","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6620813850","display_name":null,"funder_award_id":"CARS-41","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8310450511","display_name":null,"funder_award_id":"2022YFD1300701","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8793253586","display_name":null,"funder_award_id":"CAAS-ASTIP-G2022-IFST","funder_id":"https://openalex.org/F4320323155","funder_display_name":"Chinese Academy of Agricultural Sciences"},{"id":"https://openalex.org/G8816767934","display_name":null,"funder_award_id":"CAAS-ASTIP-G2022-IFST-07","funder_id":"https://openalex.org/F4320335848","funder_display_name":"Agricultural Science and Technology Innovation Program"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323155","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335848","display_name":"Agricultural Science and Technology Innovation Program","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4387865568.pdf","grobid_xml":"https://content.openalex.org/works/W4387865568.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W2021384992","https://openalex.org/W2076048958","https://openalex.org/W2087574732","https://openalex.org/W2102461176","https://openalex.org/W2103031848","https://openalex.org/W2103485392","https://openalex.org/W2106391842","https://openalex.org/W2108134720","https://openalex.org/W2130687290","https://openalex.org/W2132629607","https://openalex.org/W2134984452","https://openalex.org/W2136819827","https://openalex.org/W2141627824","https://openalex.org/W2152521138","https://openalex.org/W2152705149","https://openalex.org/W2154136145","https://openalex.org/W2155194485","https://openalex.org/W2187089797","https://openalex.org/W2465613542","https://openalex.org/W2570083522","https://openalex.org/W2917858269","https://openalex.org/W2951433247","https://openalex.org/W2952253955","https://openalex.org/W2957436444","https://openalex.org/W2964303116","https://openalex.org/W2971405760","https://openalex.org/W2973165790","https://openalex.org/W2992752586","https://openalex.org/W3095583226","https://openalex.org/W3102659883","https://openalex.org/W3107527779","https://openalex.org/W3132382371","https://openalex.org/W3174714560","https://openalex.org/W3177828909","https://openalex.org/W3179485843","https://openalex.org/W3209369100","https://openalex.org/W4200350015","https://openalex.org/W4205773061","https://openalex.org/W4213112325","https://openalex.org/W4220824576","https://openalex.org/W4226331246","https://openalex.org/W4239311106","https://openalex.org/W4281485069","https://openalex.org/W4290075586","https://openalex.org/W4303520619","https://openalex.org/W4309438076","https://openalex.org/W4310954948","https://openalex.org/W4318071656","https://openalex.org/W4363625713","https://openalex.org/W4383218913","https://openalex.org/W4385245566","https://openalex.org/W4386331037","https://openalex.org/W6696048330","https://openalex.org/W6739901393","https://openalex.org/W6760434389","https://openalex.org/W6763868836","https://openalex.org/W6774167476","https://openalex.org/W6798272402"],"related_works":["https://openalex.org/W4390516098","https://openalex.org/W2371138613","https://openalex.org/W2048963458","https://openalex.org/W43109613","https://openalex.org/W2359952343","https://openalex.org/W2181948922","https://openalex.org/W2080152487","https://openalex.org/W2384362569","https://openalex.org/W2239445980","https://openalex.org/W2995553446"],"abstract_inverted_index":{"The":[0,50,114],"advanced":[1],"language":[2],"models":[3,68],"have":[4],"enabled":[5],"us":[6],"to":[7,80,119],"recognize":[8,81],"protein-protein":[9],"interactions":[10],"(PPIs)":[11],"and":[12,45,61,108,141],"interaction":[13,48,121,143],"sites":[14],"using":[15,34],"protein":[16,35,156],"sequences":[17],"or":[18],"structures.":[19],"Here,":[20],"we":[21],"trained":[22],"the":[23,66,77,104,136,147,155],"MindSpore":[24],"ProteinBERT":[25],"(MP-BERT)":[26,53],"model,":[27],"a":[28,98],"Bidirectional":[29],"Encoder":[30],"Representation":[31],"from":[32],"Transformers,":[33],"pairs":[36],"as":[37,56,131],"inputs,":[38],"making":[39],"it":[40,126],"suitable":[41],"for":[42,73],"identifying":[43],"PPIs":[44,82,140],"their":[46,142],"respective":[47],"sites.":[49],"pretrained":[51],"model":[52,94,115],"was":[54,86,95,116],"fine-tuned":[55],"MPB-PPI":[57],"(MP-BERT":[58],"on":[59,69,88],"PPI)":[60],"demonstrated":[62],"its":[63],"superiority":[64],"over":[65],"state-of-the-art":[67],"diverse":[70],"benchmark":[71],"datasets":[72],"predicting":[74],"PPIs.":[75],"Moreover,":[76],"model's":[78],"capability":[79],"among":[83],"various":[84],"organisms":[85,107],"evaluated":[87],"multiple":[89],"organisms.":[90],"An":[91],"amalgamated":[92],"organism":[93],"designed,":[96],"exhibiting":[97],"high":[99],"level":[100],"of":[101,106,112,138,149],"generalization":[102],"across":[103],"majority":[105],"attaining":[109],"an":[110],"accuracy":[111],"92.65%.":[113],"also":[117],"customized":[118],"predict":[120],"site":[122,129],"propensity":[123],"by":[124],"fine-tuning":[125],"with":[127,154],"PPI":[128],"data":[130],"MPB-PPISP.":[132],"Our":[133],"method":[134],"facilitates":[135],"prediction":[137],"both":[139],"sites,":[144],"thereby":[145],"illustrating":[146],"potency":[148],"transfer":[150],"learning":[151],"in":[152],"dealing":[153],"pair":[157],"task.":[158]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
