{"id":"https://openalex.org/W4388034186","doi":"https://doi.org/10.1093/bib/bbad373","title":"VISN: virus instance segmentation network for TEM images using deep attention transformer","display_name":"VISN: virus instance segmentation network for TEM images using deep attention transformer","publication_year":2023,"publication_date":"2023-09-22","ids":{"openalex":"https://openalex.org/W4388034186","doi":"https://doi.org/10.1093/bib/bbad373","pmid":"https://pubmed.ncbi.nlm.nih.gov/37903415"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad373","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad373","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad373/52690001/bbad373.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad373/52690001/bbad373.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101062897","display_name":"Chi Xiao","orcid":null},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]},{"id":"https://openalex.org/I4387154005","display_name":"State Key Laboratory of Digital Medical Engineering","ror":"https://ror.org/03ab0at74","country_code":null,"type":"facility","lineage":["https://openalex.org/I4387154005","https://openalex.org/I76569877"]},{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chi Xiao","raw_affiliation_strings":["Hainan University , One Health Institute, , 570228, Haikou , China","Hainan University , School of Biomedical Engineering, , 570228, Haikou , China","Key Laboratory of Biomedical Engineering of Hainan Province , One Health Institute, , 570228, Haikou , China","State key laboratory of digital medical engineering , School of Biomedical Engineering, , 570228, Haikou , China","Key Laboratory of Biomedical Engineering of Hainan Province, One Health Institute, Hainan University, 570228, Haikou, China","State key laboratory of digital medical engineering, School of Biomedical Engineering, Hainan University, 570228, Haikou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hainan University , One Health Institute, , 570228, Haikou , China","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"Hainan University , School of Biomedical Engineering, , 570228, Haikou , China","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"Key Laboratory of Biomedical Engineering of Hainan Province , One Health Institute, , 570228, Haikou , China","institution_ids":[]},{"raw_affiliation_string":"State key laboratory of digital medical engineering , School of Biomedical Engineering, , 570228, Haikou , China","institution_ids":["https://openalex.org/I79731167"]},{"raw_affiliation_string":"Key Laboratory of Biomedical Engineering of Hainan Province, One Health Institute, Hainan University, 570228, Haikou, China","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"State key laboratory of digital medical engineering, School of Biomedical Engineering, Hainan University, 570228, Haikou, China","institution_ids":["https://openalex.org/I79731167","https://openalex.org/I20942203","https://openalex.org/I4387154005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111964102","display_name":"Jun Wang","orcid":"https://orcid.org/0009-0008-8475-2934"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210119392","display_name":"Institute of Microelectronics","ror":"https://ror.org/02s6gs133","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210119392"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Wang","raw_affiliation_strings":["Laboratory of Microelectronic Devices & Integrated Technology, Institute of Microelectronics, Chinese Academy of Sciences , 100029, Beijing , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Microelectronic Devices & Integrated Technology, Institute of Microelectronics, Chinese Academy of Sciences , 100029, Beijing , China","institution_ids":["https://openalex.org/I4210119392","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101260704","display_name":"Shenrong Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]},{"id":"https://openalex.org/I4387154005","display_name":"State Key Laboratory of Digital Medical Engineering","ror":"https://ror.org/03ab0at74","country_code":null,"type":"facility","lineage":["https://openalex.org/I4387154005","https://openalex.org/I76569877"]},{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shenrong Yang","raw_affiliation_strings":["Hainan University , One Health Institute, , 570228, Haikou , China","Hainan University , School of Biomedical Engineering, , 570228, Haikou , China","Key Laboratory of Biomedical Engineering of Hainan Province , One Health Institute, , 570228, Haikou , China","State key laboratory of digital medical engineering , School of Biomedical Engineering, , 570228, Haikou , China","State key laboratory of digital medical engineering, School of Biomedical Engineering, Hainan University, 570228, Haikou, China","Key Laboratory of Biomedical Engineering of Hainan Province, One Health Institute, Hainan University, 570228, Haikou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hainan University , One Health Institute, , 570228, Haikou , China","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"Hainan University , School of Biomedical Engineering, , 570228, Haikou , China","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"Key Laboratory of Biomedical Engineering of Hainan Province , One Health Institute, , 570228, Haikou , China","institution_ids":[]},{"raw_affiliation_string":"State key laboratory of digital medical engineering , School of Biomedical Engineering, , 570228, Haikou , China","institution_ids":["https://openalex.org/I79731167"]},{"raw_affiliation_string":"State key laboratory of digital medical engineering, School of Biomedical Engineering, Hainan University, 570228, Haikou, China","institution_ids":["https://openalex.org/I79731167","https://openalex.org/I20942203","https://openalex.org/I4387154005"]},{"raw_affiliation_string":"Key Laboratory of Biomedical Engineering of Hainan Province, One Health Institute, Hainan University, 570228, Haikou, China","institution_ids":["https://openalex.org/I20942203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109650602","display_name":"Minxin Heng","orcid":null},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]},{"id":"https://openalex.org/I4387154005","display_name":"State Key Laboratory of Digital Medical Engineering","ror":"https://ror.org/03ab0at74","country_code":null,"type":"facility","lineage":["https://openalex.org/I4387154005","https://openalex.org/I76569877"]},{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Minxin Heng","raw_affiliation_strings":["Hainan University , One Health Institute, , 570228, Haikou , China","Hainan University , School of Biomedical Engineering, , 570228, Haikou , China","Key Laboratory of Biomedical Engineering of Hainan Province , One Health Institute, , 570228, Haikou , China","State key laboratory of digital medical engineering , School of Biomedical Engineering, , 570228, Haikou , China","State key laboratory of digital medical engineering, School of Biomedical Engineering, Hainan University, 570228, Haikou, China","Key Laboratory of Biomedical Engineering of Hainan Province, One Health Institute, Hainan University, 570228, Haikou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hainan University , One Health Institute, , 570228, Haikou , China","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"Hainan University , School of Biomedical Engineering, , 570228, Haikou , China","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"Key Laboratory of Biomedical Engineering of Hainan Province , One Health Institute, , 570228, Haikou , China","institution_ids":[]},{"raw_affiliation_string":"State key laboratory of digital medical engineering , School of Biomedical Engineering, , 570228, Haikou , China","institution_ids":["https://openalex.org/I79731167"]},{"raw_affiliation_string":"State key laboratory of digital medical engineering, School of Biomedical Engineering, Hainan University, 570228, Haikou, China","institution_ids":["https://openalex.org/I79731167","https://openalex.org/I20942203","https://openalex.org/I4387154005"]},{"raw_affiliation_string":"Key Laboratory of Biomedical Engineering of Hainan Province, One Health Institute, Hainan University, 570228, Haikou, China","institution_ids":["https://openalex.org/I20942203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110918050","display_name":"Junyi Su","orcid":null},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]},{"id":"https://openalex.org/I4387154005","display_name":"State Key Laboratory of Digital Medical Engineering","ror":"https://ror.org/03ab0at74","country_code":null,"type":"facility","lineage":["https://openalex.org/I4387154005","https://openalex.org/I76569877"]},{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junyi Su","raw_affiliation_strings":["Hainan University , One Health Institute, , 570228, Haikou , China","Hainan University , School of Biomedical Engineering, , 570228, Haikou , China","Key Laboratory of Biomedical Engineering of Hainan Province , One Health Institute, , 570228, Haikou , China","State key laboratory of digital medical engineering , School of Biomedical Engineering, , 570228, Haikou , China","State key laboratory of digital medical engineering, School of Biomedical Engineering, Hainan University, 570228, Haikou, China","Key Laboratory of Biomedical Engineering of Hainan Province, One Health Institute, Hainan University, 570228, Haikou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hainan University , One Health Institute, , 570228, Haikou , China","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"Hainan University , School of Biomedical Engineering, , 570228, Haikou , China","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"Key Laboratory of Biomedical Engineering of Hainan Province , One Health Institute, , 570228, Haikou , China","institution_ids":[]},{"raw_affiliation_string":"State key laboratory of digital medical engineering , School of Biomedical Engineering, , 570228, Haikou , China","institution_ids":["https://openalex.org/I79731167"]},{"raw_affiliation_string":"State key laboratory of digital medical engineering, School of Biomedical Engineering, Hainan University, 570228, Haikou, China","institution_ids":["https://openalex.org/I79731167","https://openalex.org/I20942203","https://openalex.org/I4387154005"]},{"raw_affiliation_string":"Key Laboratory of Biomedical Engineering of Hainan Province, One Health Institute, Hainan University, 570228, Haikou, China","institution_ids":["https://openalex.org/I20942203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101552420","display_name":"Hao Xiao","orcid":"https://orcid.org/0000-0003-4009-3689"},"institutions":[{"id":"https://openalex.org/I173759888","display_name":"Hunan Normal University","ror":"https://ror.org/053w1zy07","country_code":"CN","type":"education","lineage":["https://openalex.org/I173759888"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]},{"id":"https://openalex.org/I4210140986","display_name":"National Institute for Viral Disease Control and Prevention","ror":"https://ror.org/04b1sh213","country_code":"CN","type":"government","lineage":["https://openalex.org/I184490438","https://openalex.org/I4210127390","https://openalex.org/I4210140986","https://openalex.org/I4210151987"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Hao Xiao","raw_affiliation_strings":["Chinese Center for Disease Control and Prevention , National Institute for Viral Disease Control and Prevention, , 102206, Beijing , China","Hunan Normal University , Key Laboratory of Low-dimensional Quantum Structures and Quantum Control, School of Physics and Electronics, , 410081, Changsha , China","Key Laboratory for Matter Microstructure and Function of Hunan Province , Key Laboratory of Low-dimensional Quantum Structures and Quantum Control, School of Physics and Electronics, , 410081, Changsha , China","National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases , National Institute for Viral Disease Control and Prevention, , 102206, Beijing , China","Key Laboratory for Matter Microstructure and Function of Hunan Province, Key Laboratory of Low-dimensional Quantum Structures and Quantum Control, School of Physics and Electronics, Hunan Normal University, 410081, Changsha, China","National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, 102206, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chinese Center for Disease Control and Prevention , National Institute for Viral Disease Control and Prevention, , 102206, Beijing , China","institution_ids":["https://openalex.org/I4210140986"]},{"raw_affiliation_string":"Hunan Normal University , Key Laboratory of Low-dimensional Quantum Structures and Quantum Control, School of Physics and Electronics, , 410081, Changsha , China","institution_ids":["https://openalex.org/I4210108141"]},{"raw_affiliation_string":"Key Laboratory for Matter Microstructure and Function of Hunan Province , Key Laboratory of Low-dimensional Quantum Structures and Quantum Control, School of Physics and Electronics, , 410081, Changsha , China","institution_ids":["https://openalex.org/I4210108141"]},{"raw_affiliation_string":"National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases , National Institute for Viral Disease Control and Prevention, , 102206, Beijing , China","institution_ids":["https://openalex.org/I4210140986"]},{"raw_affiliation_string":"Key Laboratory for Matter Microstructure and Function of Hunan Province, Key Laboratory of Low-dimensional Quantum Structures and Quantum Control, School of Physics and Electronics, Hunan Normal University, 410081, Changsha, China","institution_ids":["https://openalex.org/I173759888"]},{"raw_affiliation_string":"National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, 102206, Beijing, China","institution_ids":["https://openalex.org/I4210140986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031203283","display_name":"Jingdong Song","orcid":"https://orcid.org/0000-0001-8808-1981"},"institutions":[{"id":"https://openalex.org/I4210140986","display_name":"National Institute for Viral Disease Control and Prevention","ror":"https://ror.org/04b1sh213","country_code":"CN","type":"government","lineage":["https://openalex.org/I184490438","https://openalex.org/I4210127390","https://openalex.org/I4210140986","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jingdong Song","raw_affiliation_strings":["Chinese Center for Disease Control and Prevention , National Institute for Viral Disease Control and Prevention, , 102206, Beijing , China","NHC Key Laboratory of Biosafety , National Institute for Viral Disease Control and Prevention, , 102206, Beijing , China","National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases , National Institute for Viral Disease Control and Prevention, , 102206, Beijing , China","NHC Key Laboratory of Biosafety, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, 102206, Beijing, China","National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, 102206, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chinese Center for Disease Control and Prevention , National Institute for Viral Disease Control and Prevention, , 102206, Beijing , China","institution_ids":["https://openalex.org/I4210140986"]},{"raw_affiliation_string":"NHC Key Laboratory of Biosafety , National Institute for Viral Disease Control and Prevention, , 102206, Beijing , China","institution_ids":["https://openalex.org/I4210140986"]},{"raw_affiliation_string":"National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases , National Institute for Viral Disease Control and Prevention, , 102206, Beijing , China","institution_ids":["https://openalex.org/I4210140986"]},{"raw_affiliation_string":"NHC Key Laboratory of Biosafety, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, 102206, Beijing, China","institution_ids":["https://openalex.org/I4210140986"]},{"raw_affiliation_string":"National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, 102206, Beijing, China","institution_ids":["https://openalex.org/I4210140986"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072899107","display_name":"Weifu Li","orcid":"https://orcid.org/0000-0002-8444-9782"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Weifu Li","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University , 430070, Wuhan , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University , 430070, Wuhan , China","institution_ids":["https://openalex.org/I204823248"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5031203283","https://openalex.org/A5072899107"],"corresponding_institution_ids":["https://openalex.org/I204823248","https://openalex.org/I4210140986"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.2474,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.80657332,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"24","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7348931431770325},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7065759301185608},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6381282210350037},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.6369463205337524},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.606548547744751},{"id":"https://openalex.org/keywords/herpes-simplex-virus","display_name":"Herpes simplex virus","score":0.559003472328186},{"id":"https://openalex.org/keywords/novel-virus","display_name":"Novel virus","score":0.5205384492874146},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.40712183713912964},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.31557244062423706},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.20874059200286865},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19008997082710266},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11193394660949707},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.07296097278594971}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7348931431770325},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7065759301185608},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6381282210350037},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.6369463205337524},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.606548547744751},{"id":"https://openalex.org/C2781196997","wikidata":"https://www.wikidata.org/wiki/Q655331","display_name":"Herpes simplex virus","level":3,"score":0.559003472328186},{"id":"https://openalex.org/C2781031778","wikidata":"https://www.wikidata.org/wiki/Q16000255","display_name":"Novel virus","level":4,"score":0.5205384492874146},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.40712183713912964},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.31557244062423706},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.20874059200286865},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19008997082710266},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11193394660949707},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.07296097278594971},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053118","descriptor_name":"Influenza A Virus, H1N1 Subtype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053118","descriptor_name":"Influenza A Virus, H1N1 Subtype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053118","descriptor_name":"Influenza A Virus, H1N1 Subtype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad373","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad373","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad373/52690001/bbad373.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37903415","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37903415","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbad373","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad373","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad373/52690001/bbad373.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.6600000262260437,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G2426847354","display_name":null,"funder_award_id":"621QN216","funder_id":"https://openalex.org/F4320322866","funder_display_name":"Natural Science Foundation of Hainan Province"},{"id":"https://openalex.org/G347296885","display_name":null,"funder_award_id":"Hnky2021-13","funder_id":"https://openalex.org/F4320326677","funder_display_name":"Education Department of Hainan Province"},{"id":"https://openalex.org/G4792958452","display_name":null,"funder_award_id":"2022YFC2602202","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5309168274","display_name":null,"funder_award_id":"2662020LXQD002","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320322866","display_name":"Natural Science Foundation of Hainan Province","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320326677","display_name":"Education Department of Hainan Province","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4388034186.pdf"},"referenced_works_count":69,"referenced_works":["https://openalex.org/W639708223","https://openalex.org/W1568245674","https://openalex.org/W2057511190","https://openalex.org/W2086651550","https://openalex.org/W2091575950","https://openalex.org/W2138631520","https://openalex.org/W2163981854","https://openalex.org/W2186222003","https://openalex.org/W2384666987","https://openalex.org/W2460852148","https://openalex.org/W2601530120","https://openalex.org/W2768282280","https://openalex.org/W2790326488","https://openalex.org/W2900320412","https://openalex.org/W2903440260","https://openalex.org/W2909948317","https://openalex.org/W2946970385","https://openalex.org/W2991009889","https://openalex.org/W3004280078","https://openalex.org/W3047032303","https://openalex.org/W3047208380","https://openalex.org/W3048886990","https://openalex.org/W3087771094","https://openalex.org/W3088770527","https://openalex.org/W3090792849","https://openalex.org/W3093600664","https://openalex.org/W3094502228","https://openalex.org/W3101606529","https://openalex.org/W3105081694","https://openalex.org/W3111343791","https://openalex.org/W3115848425","https://openalex.org/W3119043992","https://openalex.org/W3121418830","https://openalex.org/W3124951096","https://openalex.org/W3133975347","https://openalex.org/W3138516171","https://openalex.org/W3139833881","https://openalex.org/W3171728179","https://openalex.org/W4236965008","https://openalex.org/W4240377227","https://openalex.org/W4295312788","https://openalex.org/W4311726887","https://openalex.org/W4320812537","https://openalex.org/W6620707391","https://openalex.org/W6628973269","https://openalex.org/W6639102338","https://openalex.org/W6639824700","https://openalex.org/W6653428632","https://openalex.org/W6730003152","https://openalex.org/W6735463952","https://openalex.org/W6743731764","https://openalex.org/W6746052068","https://openalex.org/W6747789827","https://openalex.org/W6748341468","https://openalex.org/W6753412334","https://openalex.org/W6760739867","https://openalex.org/W6766978945","https://openalex.org/W6774960221","https://openalex.org/W6777673941","https://openalex.org/W6781358803","https://openalex.org/W6781889298","https://openalex.org/W6784333009","https://openalex.org/W6784930956","https://openalex.org/W6785652829","https://openalex.org/W6791472037","https://openalex.org/W6792155083","https://openalex.org/W6810229471","https://openalex.org/W6847876731","https://openalex.org/W6850186649"],"related_works":["https://openalex.org/W4375867731","https://openalex.org/W2611989081","https://openalex.org/W4230611425","https://openalex.org/W2731899572","https://openalex.org/W4294635752","https://openalex.org/W1993339219","https://openalex.org/W1562336285","https://openalex.org/W2142709993","https://openalex.org/W2264502654","https://openalex.org/W1987092624"],"abstract_inverted_index":{"The":[0,171],"identification":[1],"of":[2,33,51,67,158,163,191],"viruses":[3,79],"from":[4],"negative":[5],"staining":[6],"transmission":[7],"electron":[8],"microscopy":[9],"(TEM)":[10],"images":[11],"has":[12],"mainly":[13],"depended":[14],"on":[15,63,98],"experienced":[16],"experts.":[17],"Recent":[18],"advances":[19],"in":[20,55,188],"artificial":[21],"intelligence":[22],"have":[23,47],"enabled":[24],"virus":[25,39,52,93,143],"recognition":[26],"using":[27],"deep":[28],"learning":[29],"techniques.":[30],"However,":[31],"most":[32],"the":[34,49,64,99,108,114,189],"existing":[35],"methods":[36],"only":[37],"perform":[38],"classification":[40],"or":[41],"semantic":[42],"segmentation,":[43],"and":[44,76,80,113,134,145,160,183,186,195],"few":[45],"studies":[46],"addressed":[48],"challenge":[50],"instance":[53,65,94,168],"segmentation":[54,66,95,169],"TEM":[56,142],"images.":[57],"In":[58],"this":[59],"paper,":[60],"we":[61],"focus":[62],"severe":[68],"acute":[69],"respiratory":[70,78,124],"syndrome":[71],"coronavirus":[72],"type":[73,132],"2":[74],"(SARS-CoV-2)":[75],"other":[77,166],"provide":[81,139],"experts":[82],"with":[83,177],"more":[84],"effective":[85,92,179],"information":[86],"about":[87],"viruses.":[88,192],"We":[89,137],"propose":[90],"an":[91,178],"network":[96],"based":[97],"You":[100],"Only":[101],"Look":[102],"At":[103],"CoefficienTs":[104],"backbone,":[105],"which":[106],"integrates":[107],"Swin":[109],"Transformer,":[110],"dense":[111],"connections":[112],"coordinate-spatial":[115],"attention":[116],"mechanism,":[117],"to":[118],"identify":[119],"SARS-CoV-2,":[120],"H1N1":[121],"influenza":[122],"virus,":[123,126],"syncytial":[125],"Herpes":[127],"simplex":[128],"virus-1,":[129],"Human":[130],"adenovirus":[131],"5":[133],"Vaccinia":[135],"virus.":[136],"also":[138],"a":[140,153],"public":[141],"dataset":[144,194],"conduct":[146],"extensive":[147],"comparative":[148],"experiments.":[149],"Our":[150,193],"method":[151,174],"achieves":[152],"mean":[154],"average":[155],"precision":[156],"score":[157,162],"83.8":[159],"F1":[161],"0.920,":[164],"outperforming":[165],"state-of-the-art":[167],"algorithms.":[170],"proposed":[172],"automated":[173],"provides":[175],"virologists":[176],"approach":[180],"for":[181],"recognizing":[182],"identifying":[184],"SARS-CoV-2":[185],"assisting":[187],"diagnosis":[190],"code":[196],"are":[197],"accessible":[198],"at":[199],"https://github.com/xiaochiHNU/Virus-Instance-Segmentation-Transformer-Network.":[200]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
