{"id":"https://openalex.org/W4387583197","doi":"https://doi.org/10.1093/bib/bbad355","title":"Response to \u2018comment on rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing\u2019 by Davydov A.N.; Bolotin D.A.; Poslavsky S. V. and Chudakov D.M.","display_name":"Response to \u2018comment on rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing\u2019 by Davydov A.N.; Bolotin D.A.; Poslavsky S. V. and Chudakov D.M.","publication_year":2023,"publication_date":"2023-09-22","ids":{"openalex":"https://openalex.org/W4387583197","doi":"https://doi.org/10.1093/bib/bbad355","pmid":"https://pubmed.ncbi.nlm.nih.gov/37824736"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad355","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad355","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad355/52011655/bbad355.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad355/52011655/bbad355.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072263573","display_name":"Yu-Ning Huang","orcid":"https://orcid.org/0000-0003-1697-4267"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]},{"id":"https://openalex.org/I4210115441","display_name":"Alfred Mann Foundation","ror":"https://ror.org/036atcw47","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yu-Ning Huang","raw_affiliation_strings":["Titus Family Department of Clinical Pharmacy , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","University of Southern California , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","Titus Family Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, California, 90089, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Titus Family Department of Clinical Pharmacy , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","institution_ids":["https://openalex.org/I4210115441"]},{"raw_affiliation_string":"University of Southern California , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"Titus Family Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, California, 90089, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063552754","display_name":"Mohammad Vahed","orcid":"https://orcid.org/0000-0002-4721-2356"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]},{"id":"https://openalex.org/I4210115441","display_name":"Alfred Mann Foundation","ror":"https://ror.org/036atcw47","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohammad Vahed","raw_affiliation_strings":["Titus Family Department of Clinical Pharmacy , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","University of Southern California , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","Titus Family Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, California, 90089, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Titus Family Department of Clinical Pharmacy , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","institution_ids":["https://openalex.org/I4210115441"]},{"raw_affiliation_string":"University of Southern California , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"Titus Family Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, California, 90089, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067117676","display_name":"Kerui Peng","orcid":"https://orcid.org/0000-0002-9362-4618"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]},{"id":"https://openalex.org/I4210115441","display_name":"Alfred Mann Foundation","ror":"https://ror.org/036atcw47","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kerui Peng","raw_affiliation_strings":["Titus Family Department of Clinical Pharmacy , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","University of Southern California , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","Titus Family Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, California, 90089, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Titus Family Department of Clinical Pharmacy , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","institution_ids":["https://openalex.org/I4210115441"]},{"raw_affiliation_string":"University of Southern California , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"Titus Family Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, California, 90089, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003617778","display_name":"Houda Alachkar","orcid":"https://orcid.org/0000-0001-5567-5521"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]},{"id":"https://openalex.org/I4210115441","display_name":"Alfred Mann Foundation","ror":"https://ror.org/036atcw47","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Houda Alachkar","raw_affiliation_strings":["Titus Family Department of Clinical Pharmacy , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","University of Southern California , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","Titus Family Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, California, 90089, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Titus Family Department of Clinical Pharmacy , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","institution_ids":["https://openalex.org/I4210115441"]},{"raw_affiliation_string":"University of Southern California , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"Titus Family Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, California, 90089, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017101305","display_name":"Serghei Mangul","orcid":"https://orcid.org/0000-0003-4770-3443"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]},{"id":"https://openalex.org/I4210115441","display_name":"Alfred Mann Foundation","ror":"https://ror.org/036atcw47","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115441"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Serghei Mangul","raw_affiliation_strings":["Department of Quantitative and Computational Biology , Dornsife College of Letters, Arts and Sciences, , Los Angeles, CA 90033 , USA","Titus Family Department of Clinical Pharmacy , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","University of Southern California , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","University of Southern California , Dornsife College of Letters, Arts and Sciences, , Los Angeles, CA 90033 , USA","Department of Quantitative and Computational Biology, Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA 90033, USA","Titus Family Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, California, 90089, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Quantitative and Computational Biology , Dornsife College of Letters, Arts and Sciences, , Los Angeles, CA 90033 , USA","institution_ids":[]},{"raw_affiliation_string":"Titus Family Department of Clinical Pharmacy , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","institution_ids":["https://openalex.org/I4210115441"]},{"raw_affiliation_string":"University of Southern California , Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, , Los Angeles, California, 90089 , USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"University of Southern California , Dornsife College of Letters, Arts and Sciences, , Los Angeles, CA 90033 , USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"Department of Quantitative and Computational Biology, Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA 90033, USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"Titus Family Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, California, 90089, USA","institution_ids":["https://openalex.org/I1174212"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5017101305"],"corresponding_institution_ids":["https://openalex.org/I1174212","https://openalex.org/I4210115441"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.1163,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.46374464,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"24","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.9693999886512756,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.9693999886512756,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9376000165939331,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9247999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.6706447005271912},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.6044442653656006},{"id":"https://openalex.org/keywords/repertoire","display_name":"Repertoire","score":0.5988953709602356},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5826399326324463},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4008808434009552},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38808298110961914},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.15179654955863953},{"id":"https://openalex.org/keywords/economics","display_name":"Economics","score":0.0524267852306366},{"id":"https://openalex.org/keywords/management","display_name":"Management","score":0.048786938190460205},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.046968549489974976}],"concepts":[{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.6706447005271912},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.6044442653656006},{"id":"https://openalex.org/C2778473898","wikidata":"https://www.wikidata.org/wiki/Q2145110","display_name":"Repertoire","level":2,"score":0.5988953709602356},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5826399326324463},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4008808434009552},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38808298110961914},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.15179654955863953},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0524267852306366},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.048786938190460205},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.046968549489974976},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016693","descriptor_name":"Receptors, Antigen, T-Cell, alpha-beta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016693","descriptor_name":"Receptors, Antigen, T-Cell, alpha-beta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016693","descriptor_name":"Receptors, Antigen, T-Cell, alpha-beta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016693","descriptor_name":"Receptors, Antigen, T-Cell, alpha-beta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016693","descriptor_name":"Receptors, Antigen, T-Cell, alpha-beta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbad355","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad355","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad355/52011655/bbad355.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37824736","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37824736","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10569746","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10569746","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10569746/pdf/bbad355.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbad355","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad355","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad355/52011655/bbad355.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3862180012","display_name":null,"funder_award_id":"R01 CA248381","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G4241624374","display_name":null,"funder_award_id":"R01 AI173172","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"}],"funders":[{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4387583197.pdf","grobid_xml":"https://content.openalex.org/works/W4387583197.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2949171194"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-27T08:26:11.824852","created_date":"2025-10-10T00:00:00"}
