{"id":"https://openalex.org/W4387583200","doi":"https://doi.org/10.1093/bib/bbad349","title":"SoyDNGP: a web-accessible deep learning framework for genomic prediction in soybean breeding","display_name":"SoyDNGP: a web-accessible deep learning framework for genomic prediction in soybean breeding","publication_year":2023,"publication_date":"2023-09-22","ids":{"openalex":"https://openalex.org/W4387583200","doi":"https://doi.org/10.1093/bib/bbad349","pmid":"https://pubmed.ncbi.nlm.nih.gov/37824739"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad349","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad349","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad349/52011681/bbad349.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad349/52011681/bbad349.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114859495","display_name":"Pengfei Gao","orcid":"https://orcid.org/0000-0002-1909-1294"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pengfei Gao","raw_affiliation_strings":["National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106731753","display_name":"Haonan Zhao","orcid":"https://orcid.org/0009-0007-8553-945X"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haonan Zhao","raw_affiliation_strings":["National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103072531","display_name":"Zheng Luo","orcid":"https://orcid.org/0000-0002-6919-6334"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zheng Luo","raw_affiliation_strings":["National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117409094","display_name":"Y.-T. Lin","orcid":"https://orcid.org/0000-0003-3631-1655"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yifan Lin","raw_affiliation_strings":["Hubei Hongshan Laboratory , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Hongshan Laboratory , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043230494","display_name":"Wanjie Feng","orcid":"https://orcid.org/0009-0006-5206-4454"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wanjie Feng","raw_affiliation_strings":["National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100768265","display_name":"Yaling Li","orcid":"https://orcid.org/0000-0002-4711-5353"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaling Li","raw_affiliation_strings":["National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081419044","display_name":"Fanjiang Kong","orcid":"https://orcid.org/0000-0001-7138-1478"},"institutions":[{"id":"https://openalex.org/I37987034","display_name":"Guangzhou University","ror":"https://ror.org/05ar8rn06","country_code":"CN","type":"education","lineage":["https://openalex.org/I37987034"]},{"id":"https://openalex.org/I4210098034","display_name":"Key Laboratory of Guangdong Province","ror":"https://ror.org/00swtqp09","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210098034"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fanjiang Kong","raw_affiliation_strings":["Guangzhou Key Laboratory of Crop Gene Editing , Guangdong Key Laboratory of Plant Adaptation and Molecular Design, Innovative Center of Molecular Genetics and Evolution, School of Life Sciences, , Guangzhou 510006 , China","Guangzhou University , Guangdong Key Laboratory of Plant Adaptation and Molecular Design, Innovative Center of Molecular Genetics and Evolution, School of Life Sciences, , Guangzhou 510006 , China","Guangzhou Key Laboratory of Crop Gene Editing, Guangdong Key Laboratory of Plant Adaptation and Molecular Design, Innovative Center of Molecular Genetics and Evolution, School of Life Sciences, Guangzhou University, Guangzhou 510006, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Key Laboratory of Crop Gene Editing , Guangdong Key Laboratory of Plant Adaptation and Molecular Design, Innovative Center of Molecular Genetics and Evolution, School of Life Sciences, , Guangzhou 510006 , China","institution_ids":["https://openalex.org/I4210098034"]},{"raw_affiliation_string":"Guangzhou University , Guangdong Key Laboratory of Plant Adaptation and Molecular Design, Innovative Center of Molecular Genetics and Evolution, School of Life Sciences, , Guangzhou 510006 , China","institution_ids":["https://openalex.org/I37987034"]},{"raw_affiliation_string":"Guangzhou Key Laboratory of Crop Gene Editing, Guangdong Key Laboratory of Plant Adaptation and Molecular Design, Innovative Center of Molecular Genetics and Evolution, School of Life Sciences, Guangzhou University, Guangzhou 510006, China","institution_ids":["https://openalex.org/I37987034"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100626986","display_name":"Xia Li","orcid":"https://orcid.org/0000-0001-9286-0718"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xia Li","raw_affiliation_strings":["National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101921467","display_name":"Chao Fang","orcid":"https://orcid.org/0000-0003-0564-7586"},"institutions":[{"id":"https://openalex.org/I37987034","display_name":"Guangzhou University","ror":"https://ror.org/05ar8rn06","country_code":"CN","type":"education","lineage":["https://openalex.org/I37987034"]},{"id":"https://openalex.org/I4210098034","display_name":"Key Laboratory of Guangdong Province","ror":"https://ror.org/00swtqp09","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210098034"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chao Fang","raw_affiliation_strings":["Guangzhou Key Laboratory of Crop Gene Editing , Guangdong Key Laboratory of Plant Adaptation and Molecular Design, Innovative Center of Molecular Genetics and Evolution, School of Life Sciences, , Guangzhou 510006 , China","Guangzhou University , Guangdong Key Laboratory of Plant Adaptation and Molecular Design, Innovative Center of Molecular Genetics and Evolution, School of Life Sciences, , Guangzhou 510006 , China","Guangzhou Key Laboratory of Crop Gene Editing, Guangdong Key Laboratory of Plant Adaptation and Molecular Design, Innovative Center of Molecular Genetics and Evolution, School of Life Sciences, Guangzhou University, Guangzhou 510006, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Key Laboratory of Crop Gene Editing , Guangdong Key Laboratory of Plant Adaptation and Molecular Design, Innovative Center of Molecular Genetics and Evolution, School of Life Sciences, , Guangzhou 510006 , China","institution_ids":["https://openalex.org/I4210098034"]},{"raw_affiliation_string":"Guangzhou University , Guangdong Key Laboratory of Plant Adaptation and Molecular Design, Innovative Center of Molecular Genetics and Evolution, School of Life Sciences, , Guangzhou 510006 , China","institution_ids":["https://openalex.org/I37987034"]},{"raw_affiliation_string":"Guangzhou Key Laboratory of Crop Gene Editing, Guangdong Key Laboratory of Plant Adaptation and Molecular Design, Innovative Center of Molecular Genetics and Evolution, School of Life Sciences, Guangzhou University, Guangzhou 510006, China","institution_ids":["https://openalex.org/I37987034"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011099524","display_name":"Xutong Wang","orcid":"https://orcid.org/0000-0002-4625-7659"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xutong Wang","raw_affiliation_strings":["Hubei Hongshan Laboratory , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China","National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Hongshan Laboratory , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China","institution_ids":[]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University , No. 1 Shizishan Road, Hongshan District, Wuhan, Hubei 430070 , China","institution_ids":["https://openalex.org/I204823248"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5011099524","https://openalex.org/A5100626986","https://openalex.org/A5101921467"],"corresponding_institution_ids":["https://openalex.org/I204823248","https://openalex.org/I37987034","https://openalex.org/I4210098034"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":21.2909,"has_fulltext":true,"cited_by_count":57,"citation_normalized_percentile":{"value":0.99433013,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"24","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12571","display_name":"Soybean genetics and cultivation","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12571","display_name":"Soybean genetics and cultivation","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11229","display_name":"Genetics and Plant Breeding","score":0.9763000011444092,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5634992122650146},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4712066054344177},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3879803717136383},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3837847411632538},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.37698885798454285},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2669229209423065}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5634992122650146},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4712066054344177},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3879803717136383},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3837847411632538},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.37698885798454285},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2669229209423065}],"mesh":[{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad349","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad349","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad349/52011681/bbad349.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37824739","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37824739","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbad349","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad349","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad349/52011681/bbad349.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.7900000214576721,"display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G4526802442","display_name":null,"funder_award_id":"2022YFD1201502","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320322927","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884"},{"id":"https://openalex.org/F4320324775","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4387583200.pdf"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W1820802385","https://openalex.org/W1914219707","https://openalex.org/W1928998639","https://openalex.org/W1988902793","https://openalex.org/W1998447523","https://openalex.org/W2036897871","https://openalex.org/W2064013109","https://openalex.org/W2065469815","https://openalex.org/W2067715889","https://openalex.org/W2080562691","https://openalex.org/W2088252378","https://openalex.org/W2093187991","https://openalex.org/W2097591011","https://openalex.org/W2119180969","https://openalex.org/W2130434665","https://openalex.org/W2143950081","https://openalex.org/W2149992227","https://openalex.org/W2168141135","https://openalex.org/W2169981472","https://openalex.org/W2216946510","https://openalex.org/W2241764905","https://openalex.org/W2281036777","https://openalex.org/W2295797531","https://openalex.org/W2464084885","https://openalex.org/W2564688219","https://openalex.org/W2750651073","https://openalex.org/W2777810760","https://openalex.org/W2800156222","https://openalex.org/W2800434159","https://openalex.org/W2808169234","https://openalex.org/W2906801139","https://openalex.org/W2911489562","https://openalex.org/W2946371550","https://openalex.org/W2947692994","https://openalex.org/W2976353133","https://openalex.org/W3013568573","https://openalex.org/W3035986830","https://openalex.org/W3131055609","https://openalex.org/W3142740975","https://openalex.org/W3175694302","https://openalex.org/W3193156613","https://openalex.org/W3198507020","https://openalex.org/W3203633413","https://openalex.org/W4229801112","https://openalex.org/W4294904679","https://openalex.org/W4308775252","https://openalex.org/W4310017081","https://openalex.org/W4377241880","https://openalex.org/W4380990292","https://openalex.org/W4385381937","https://openalex.org/W4394666350","https://openalex.org/W6640015359","https://openalex.org/W6674561012","https://openalex.org/W6695237428"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2731899572","https://openalex.org/W3215138031","https://openalex.org/W4321369474","https://openalex.org/W3009238340","https://openalex.org/W4360585206","https://openalex.org/W4285208911","https://openalex.org/W3082895349","https://openalex.org/W4213079790","https://openalex.org/W2248239756"],"abstract_inverted_index":{"Soybean":[0],"is":[1],"a":[2,7,58,84,164,171,188,231],"globally":[3],"significant":[4,64],"crop,":[5],"playing":[6],"vital":[8],"role":[9],"in":[10,66,92,243],"human":[11],"nutrition":[12],"and":[13,19,28,35,43,80,95,106,132,150,157,216],"agriculture.":[14],"Its":[15],"complex":[16,120],"genetic":[17],"structure":[18],"wide":[20],"trait":[21,47,71,133,209,227,236],"variation,":[22],"however,":[23],"pose":[24],"challenges":[25],"for":[26,46,167,211,220,226,235,246],"breeders":[27],"researchers":[29],"aiming":[30],"to":[31,51,74,88,113,180,206],"optimize":[32],"its":[33,89,114,155,178],"yield":[34],"quality.":[36],"Addressing":[37],"this":[38,52],"biological":[39],"complexity":[40],"requires":[41],"innovative":[42],"accurate":[44],"tools":[45],"prediction.":[48,72],"In":[49],"response":[50],"challenge,":[53],"we":[54,186],"have":[55],"developed":[56],"SoyDNGP,":[57],"deep":[59],"learning-based":[60],"model":[61,107],"that":[62],"offers":[63],"advancements":[65],"the":[67,138,204,221,244],"field":[68],"of":[69,140,174,223],"soybean":[70,214,248],"Compared":[73],"existing":[75],"methods,":[76],"such":[77],"as":[78,163],"DeepGS":[79],"DNNGP,":[81],"SoyDNGP":[82,109,141,238],"boasts":[83],"distinct":[85],"advantage":[86],"due":[87],"minimal":[90],"increase":[91],"parameter":[93],"volume":[94],"superior":[96],"predictive":[97],"accuracy.":[98],"Through":[99],"rigorous":[100],"performance":[101,112,127],"comparison,":[102],"including":[103,146],"prediction":[104,169],"accuracy":[105],"complexity,":[108],"represents":[110],"improved":[111],"counterparts.":[115],"Furthermore,":[116],"it":[117],"effectively":[118],"predicted":[119],"traits":[121],"with":[122],"remarkable":[123],"precision,":[124],"demonstrating":[125],"robust":[126],"across":[128,142,170],"different":[129],"sample":[130],"sizes":[131],"complexities.":[134],"We":[135],"also":[136],"tested":[137],"versatility":[139],"multiple":[143],"crop":[144],"species,":[145],"cotton,":[147],"maize,":[148],"rice":[149],"tomato.":[151],"Our":[152],"results":[153],"showed":[154],"consistent":[156],"comparable":[158],"performance,":[159],"emphasizing":[160],"SoyDNGP's":[161],"potential":[162],"versatile":[165],"tool":[166,234],"genomic":[168],"broad":[172],"range":[173],"crops.":[175],"To":[176],"enhance":[177],"accessibility":[179],"users":[181,203],"without":[182],"extensive":[183],"programming":[184],"experience,":[185],"designed":[187],"user-friendly":[189],"web":[190],"server,":[191],"available":[192],"at":[193],"http://xtlab.hzau.edu.cn/SoyDNGP.":[194],"The":[195],"server":[196],"provides":[197],"two":[198],"features:":[199],"'Trait":[200,217],"Lookup',":[201],"offering":[202],"ability":[205],"access":[207],"pre-existing":[208],"predictions":[210],"over":[212],"500":[213],"accessions,":[215],"Prediction',":[218],"allowing":[219],"upload":[222],"VCF":[224],"files":[225],"estimation.":[228],"By":[229],"providing":[230],"high-performing,":[232],"accessible":[233],"prediction,":[237],"opens":[239],"up":[240],"new":[241],"possibilities":[242],"quest":[245],"optimized":[247],"breeding.":[249]},"counts_by_year":[{"year":2026,"cited_by_count":15},{"year":2025,"cited_by_count":32},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}