{"id":"https://openalex.org/W4386980190","doi":"https://doi.org/10.1093/bib/bbad328","title":"PTBGRP: predicting phage\u2013bacteria interactions with graph representation learning on microbial heterogeneous information network","display_name":"PTBGRP: predicting phage\u2013bacteria interactions with graph representation learning on microbial heterogeneous information network","publication_year":2023,"publication_date":"2023-09-22","ids":{"openalex":"https://openalex.org/W4386980190","doi":"https://doi.org/10.1093/bib/bbad328","pmid":"https://pubmed.ncbi.nlm.nih.gov/37742053"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad328","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad328","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad328/51728383/bbad328.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad328/51728383/bbad328.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064538645","display_name":"Jie Pan","orcid":"https://orcid.org/0000-0002-4993-298X"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Pan","raw_affiliation_strings":["Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","the College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi'an 710069, China"],"raw_orcid":"https://orcid.org/0000-0002-4993-298X","affiliations":[{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I1327237609"]},{"raw_affiliation_string":"the College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi'an 710069, China","institution_ids":["https://openalex.org/I1327237609","https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhuhong You","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710129 , China"],"raw_orcid":"https://orcid.org/0000-0003-1266-2696","affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710129 , China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057106612","display_name":"Wencai You","orcid":null},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wencai You","raw_affiliation_strings":["Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","the College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi'an 710069, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I1327237609"]},{"raw_affiliation_string":"the College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi'an 710069, China","institution_ids":["https://openalex.org/I1327237609","https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079719359","display_name":"Tian Zhao","orcid":"https://orcid.org/0000-0002-9471-3217"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tian Zhao","raw_affiliation_strings":["Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","the College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi'an 710069, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I1327237609"]},{"raw_affiliation_string":"the College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi'an 710069, China","institution_ids":["https://openalex.org/I1327237609","https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066047769","display_name":"Chenlu Feng","orcid":"https://orcid.org/0009-0006-9180-8858"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenlu Feng","raw_affiliation_strings":["Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","the College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi'an 710069, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I1327237609"]},{"raw_affiliation_string":"the College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi'an 710069, China","institution_ids":["https://openalex.org/I1327237609","https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100763257","display_name":"Xuexia Zhang","orcid":"https://orcid.org/0000-0001-9203-087X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xuexia Zhang","raw_affiliation_strings":["National Microbial Medicine Engineering & Research Center , Shijiazhuang 050015, Hebei , China","North China Pharmaceutical Group , Shijiazhuang 050015, Hebei , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Microbial Medicine Engineering & Research Center , Shijiazhuang 050015, Hebei , China","institution_ids":[]},{"raw_affiliation_string":"North China Pharmaceutical Group , Shijiazhuang 050015, Hebei , China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089828358","display_name":"Fengzhi Ren","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fengzhi Ren","raw_affiliation_strings":["National Microbial Medicine Engineering & Research Center , Shijiazhuang 050015, Hebei , China","North China Pharmaceutical Group , Shijiazhuang 050015, Hebei , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Microbial Medicine Engineering & Research Center , Shijiazhuang 050015, Hebei , China","institution_ids":[]},{"raw_affiliation_string":"North China Pharmaceutical Group , Shijiazhuang 050015, Hebei , China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101383593","display_name":"Sanxing Ma","orcid":null},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sanxing Ma","raw_affiliation_strings":["Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","the College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi'an 710069, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I1327237609"]},{"raw_affiliation_string":"the College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi'an 710069, China","institution_ids":["https://openalex.org/I1327237609","https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100380582","display_name":"Fan Wu","orcid":"https://orcid.org/0009-0003-5109-5118"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fan Wu","raw_affiliation_strings":["Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","the College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi'an 710069, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I1327237609"]},{"raw_affiliation_string":"the College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi'an 710069, China","institution_ids":["https://openalex.org/I1327237609","https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100340278","display_name":"Shiwei Wang","orcid":"https://orcid.org/0000-0001-8890-9080"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shiwei Wang","raw_affiliation_strings":["Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","the College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi'an 710069, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I1327237609"]},{"raw_affiliation_string":"the College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi'an 710069, China","institution_ids":["https://openalex.org/I1327237609","https://openalex.org/I37802460"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100834640","display_name":"Yanmei Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yanmei Sun","raw_affiliation_strings":["Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","the College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi'an 710069, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I1327237609"]},{"raw_affiliation_string":"the College of Life Sciences, Northwest University , Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, , Xi\u2019an 710069 , China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi'an 710069, China","institution_ids":["https://openalex.org/I1327237609","https://openalex.org/I37802460"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100340278","https://openalex.org/A5100834640"],"corresponding_institution_ids":["https://openalex.org/I1327237609","https://openalex.org/I37802460"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.3454,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.80972927,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"24","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5707446932792664},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5665795207023621},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.559653639793396},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.5273845195770264},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4039980173110962},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3974975347518921},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27325308322906494},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2376939356327057},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08537036180496216}],"concepts":[{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5707446932792664},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5665795207023621},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.559653639793396},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.5273845195770264},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4039980173110962},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3974975347518921},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27325308322906494},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2376939356327057},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08537036180496216},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013203","descriptor_name":"Staphylococcal Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013203","descriptor_name":"Staphylococcal Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013203","descriptor_name":"Staphylococcal Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad328","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad328","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad328/51728383/bbad328.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37742053","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37742053","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbad328","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad328","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbad328/51728383/bbad328.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4434243277","display_name":null,"funder_award_id":"2022FY101100","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8247529839","display_name":"\u94dc\u7eff\u5047\u5355\u80de\u83cc\u80de\u5916\u591a\u7cd6Psl\u548c\u7b2c\u4e8c\u4fe1\u4f7fc-di-GMP\u4ea4\u4e92\u8c03\u63a7\u7684\u5206\u5b50\u673a\u7406","funder_award_id":"31770152","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8748380971","display_name":null,"funder_award_id":"32170114","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4386980190.pdf","grobid_xml":"https://content.openalex.org/works/W4386980190.grobid-xml"},"referenced_works_count":67,"referenced_works":["https://openalex.org/W1614298861","https://openalex.org/W1888005072","https://openalex.org/W1990748933","https://openalex.org/W2007437024","https://openalex.org/W2095705004","https://openalex.org/W2100495367","https://openalex.org/W2101515427","https://openalex.org/W2104960492","https://openalex.org/W2131871423","https://openalex.org/W2136922672","https://openalex.org/W2154851992","https://openalex.org/W2187089797","https://openalex.org/W2245444176","https://openalex.org/W2345960958","https://openalex.org/W2559100382","https://openalex.org/W2560674852","https://openalex.org/W2597601064","https://openalex.org/W2613999093","https://openalex.org/W2734399491","https://openalex.org/W2889407639","https://openalex.org/W2901212243","https://openalex.org/W2920391120","https://openalex.org/W2956936996","https://openalex.org/W2961017809","https://openalex.org/W2962756421","https://openalex.org/W2972445543","https://openalex.org/W2991645484","https://openalex.org/W3005039565","https://openalex.org/W3024693033","https://openalex.org/W3035978132","https://openalex.org/W3051688178","https://openalex.org/W3084798277","https://openalex.org/W3087406311","https://openalex.org/W3091924983","https://openalex.org/W3104097132","https://openalex.org/W3107527779","https://openalex.org/W3136918052","https://openalex.org/W3146944767","https://openalex.org/W3187582009","https://openalex.org/W3196522895","https://openalex.org/W3198755792","https://openalex.org/W3200765011","https://openalex.org/W3202488381","https://openalex.org/W3202551657","https://openalex.org/W3203639727","https://openalex.org/W3211238616","https://openalex.org/W3214023742","https://openalex.org/W4200140951","https://openalex.org/W4200250437","https://openalex.org/W4205954540","https://openalex.org/W4214932602","https://openalex.org/W4226086803","https://openalex.org/W4239025696","https://openalex.org/W4294170691","https://openalex.org/W4300543510","https://openalex.org/W4306889137","https://openalex.org/W4308453660","https://openalex.org/W4309438076","https://openalex.org/W4309452766","https://openalex.org/W4309842604","https://openalex.org/W4313424570","https://openalex.org/W4316339998","https://openalex.org/W4317033501","https://openalex.org/W4323294908","https://openalex.org/W6636510571","https://openalex.org/W6674330103","https://openalex.org/W6682691769"],"related_works":["https://openalex.org/W2050457088","https://openalex.org/W2354441856","https://openalex.org/W4327971719","https://openalex.org/W307290524","https://openalex.org/W2802106743","https://openalex.org/W2366985903","https://openalex.org/W2377397314","https://openalex.org/W2991103221","https://openalex.org/W2947475210","https://openalex.org/W2357913628"],"abstract_inverted_index":{"Identifying":[0],"the":[1,15,37,47,55,124,133,143,147,172,192],"potential":[2],"bacteriophages":[3],"(phage)":[4],"candidate":[5],"to":[6,28,53,71,105,126,180],"treat":[7],"bacterial":[8,76],"infections":[9],"plays":[10],"an":[11,82],"essential":[12],"role":[13],"in":[14],"research":[16],"of":[17,36,163,174,191],"human":[18],"pathogens.":[19],"Computational":[20],"approaches":[21],"are":[22,103],"recognized":[23],"as":[24,123],"a":[25,61,119,185],"valid":[26],"way":[27],"predict":[29,72,127,182],"bacteria":[30],"and":[31,89,110,151,166],"target":[32],"phages.":[33],"However,":[34],"most":[35],"current":[38],"methods":[39,102],"only":[40],"utilize":[41],"lower-order":[42],"biological":[43,96,108,135],"information":[44,177],"without":[45],"considering":[46],"higher-order":[48],"connectivity":[49],"patterns,":[50],"which":[51],"helps":[52],"improve":[54],"predictive":[56],"accuracy.":[57],"Therefore,":[58],"we":[59],"developed":[60],"novel":[62],"microbial":[63],"heterogeneous":[64,176],"interaction":[65,87,92],"network":[66,122],"(MHIN)-based":[67],"model":[68],"called":[69],"PTBGRP":[70,79,117,141,179,193],"new":[73],"phages":[74],"for":[75],"hosts.":[77],"Specifically,":[78],"first":[80],"constructs":[81],"MHIN":[83],"by":[84],"integrating":[85],"phage-bacteria":[86],"(PBI)":[88],"six":[90],"bacteria-bacteria":[91],"networks":[93],"with":[94,156],"their":[95],"attributes.":[97],"Then,":[98],"different":[99],"representation":[100],"learning":[101],"deployed":[104],"extract":[106],"higher-level":[107],"features":[109,113],"lower-level":[111],"topological":[112],"from":[114,184],"MHIN.":[115],"Finally,":[116],"employs":[118],"deep":[120],"neural":[121],"classifier":[125],"unknown":[128],"PBI":[129,152,183],"pairs":[130],"based":[131],"on":[132,146],"fused":[134],"information.":[136],"Experiment":[137],"results":[138],"demonstrated":[139],"that":[140,171],"achieves":[142],"best":[144],"performance":[145],"corresponding":[148],"ESKAPE":[149],"pathogens":[150],"dataset":[153],"when":[154],"compared":[155],"state-of-art":[157],"methods.":[158],"In":[159],"addition,":[160],"case":[161],"studies":[162],"Klebsiella":[164],"pneumoniae":[165],"Staphylococcus":[167],"aureus":[168],"further":[169],"indicate":[170],"consideration":[173],"rich":[175],"enables":[178],"accurately":[181],"more":[186],"comprehensive":[187],"perspective.":[188],"The":[189],"webserver":[190],"predictor":[194],"is":[195],"freely":[196],"available":[197],"at":[198],"http://120.77.11.78/PTBGRP/.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
