{"id":"https://openalex.org/W4386084210","doi":"https://doi.org/10.1093/bib/bbad308","title":"Predicting ion mobility collision cross sections using projection approximation with ROSIE-PARCS webserver","display_name":"Predicting ion mobility collision cross sections using projection approximation with ROSIE-PARCS webserver","publication_year":2023,"publication_date":"2023-08-09","ids":{"openalex":"https://openalex.org/W4386084210","doi":"https://doi.org/10.1093/bib/bbad308","pmid":"https://pubmed.ncbi.nlm.nih.gov/37609950"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad308","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad308","pdf_url":"https://academic.oup.com/bib/article-pdf/24/5/bbad308/51711127/bbad308.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/5/bbad308/51711127/bbad308.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5092677707","display_name":"S M Bargeen Alam Turzo","orcid":null},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S M Bargeen Alam Turzo","raw_affiliation_strings":["Department of Chemistry and Biochemistry and Resource for Native Mass Spectrometry Guided Structural Biology, Ohio State University , Columbus, OH 43210 , USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Biochemistry and Resource for Native Mass Spectrometry Guided Structural Biology, Ohio State University , Columbus, OH 43210 , USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108831302","display_name":"Justin T. Seffernick","orcid":null},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin T Seffernick","raw_affiliation_strings":["Department of Chemistry and Biochemistry and Resource for Native Mass Spectrometry Guided Structural Biology, Ohio State University , Columbus, OH 43210 , USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Biochemistry and Resource for Native Mass Spectrometry Guided Structural Biology, Ohio State University , Columbus, OH 43210 , USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075127527","display_name":"Sergey Lyskov","orcid":"https://orcid.org/0000-0001-6380-6712"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sergey Lyskov","raw_affiliation_strings":["Department of Chemical and Biomolecular Engineering, Johns Hopkins University , Baltimore, MD 21218 , USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biomolecular Engineering, Johns Hopkins University , Baltimore, MD 21218 , USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044975181","display_name":"Steffen Lindert","orcid":"https://orcid.org/0000-0002-3976-3473"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Steffen Lindert","raw_affiliation_strings":["Department of Chemistry and Biochemistry and Resource for Native Mass Spectrometry Guided Structural Biology, Ohio State University , Columbus, OH 43210 , USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Biochemistry and Resource for Native Mass Spectrometry Guided Structural Biology, Ohio State University , Columbus, OH 43210 , USA","institution_ids":["https://openalex.org/I52357470"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5044975181"],"corresponding_institution_ids":["https://openalex.org/I52357470"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.1674,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.75313059,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"24","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6197991967201233},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5928406119346619},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.585366427898407},{"id":"https://openalex.org/keywords/projection","display_name":"Projection (relational algebra)","score":0.5384521484375},{"id":"https://openalex.org/keywords/collision","display_name":"Collision","score":0.4857397675514221},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.48294323682785034},{"id":"https://openalex.org/keywords/cross-section","display_name":"Cross section (physics)","score":0.4724738299846649},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.340164452791214},{"id":"https://openalex.org/keywords/simulation","display_name":"Simulation","score":0.3378884792327881},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2059902548789978},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.17341187596321106},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.06949055194854736}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6197991967201233},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5928406119346619},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.585366427898407},{"id":"https://openalex.org/C57493831","wikidata":"https://www.wikidata.org/wiki/Q3134666","display_name":"Projection (relational algebra)","level":2,"score":0.5384521484375},{"id":"https://openalex.org/C121704057","wikidata":"https://www.wikidata.org/wiki/Q352070","display_name":"Collision","level":2,"score":0.4857397675514221},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.48294323682785034},{"id":"https://openalex.org/C52234038","wikidata":"https://www.wikidata.org/wiki/Q17128025","display_name":"Cross section (physics)","level":2,"score":0.4724738299846649},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.340164452791214},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.3378884792327881},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2059902548789978},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.17341187596321106},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.06949055194854736},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000075663","descriptor_name":"Ion Mobility Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000075663","descriptor_name":"Ion Mobility Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000075663","descriptor_name":"Ion Mobility Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000075663","descriptor_name":"Ion Mobility Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000075663","descriptor_name":"Ion Mobility Spectrometry","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D000075663","descriptor_name":"Ion Mobility Spectrometry","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D000075663","descriptor_name":"Ion Mobility Spectrometry","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D000075663","descriptor_name":"Ion Mobility Spectrometry","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002021","descriptor_name":"Buffers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002021","descriptor_name":"Buffers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002021","descriptor_name":"Buffers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002021","descriptor_name":"Buffers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005740","descriptor_name":"Gases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005740","descriptor_name":"Gases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005740","descriptor_name":"Gases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005740","descriptor_name":"Gases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066295","descriptor_name":"Open Access Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066295","descriptor_name":"Open Access Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066295","descriptor_name":"Open Access Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066295","descriptor_name":"Open Access Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbad308","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad308","pdf_url":"https://academic.oup.com/bib/article-pdf/24/5/bbad308/51711127/bbad308.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37609950","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37609950","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10516336","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10516336","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10516336/pdf/bbad308.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbad308","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad308","pdf_url":"https://academic.oup.com/bib/article-pdf/24/5/bbad308/51711127/bbad308.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3369989502","display_name":null,"funder_award_id":"P41 GM128577","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320309374","display_name":"Ohio State University","ror":"https://ror.org/00rs6vg23"},{"id":"https://openalex.org/F4320310145","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4386084210.pdf"},"referenced_works_count":77,"referenced_works":["https://openalex.org/W1910327630","https://openalex.org/W1971795378","https://openalex.org/W1986589565","https://openalex.org/W1989567735","https://openalex.org/W1991832340","https://openalex.org/W2014359578","https://openalex.org/W2018871138","https://openalex.org/W2019812098","https://openalex.org/W2025807025","https://openalex.org/W2028249095","https://openalex.org/W2047544230","https://openalex.org/W2054970390","https://openalex.org/W2063581254","https://openalex.org/W2069429456","https://openalex.org/W2076451815","https://openalex.org/W2086674472","https://openalex.org/W2091474459","https://openalex.org/W2103647536","https://openalex.org/W2117020466","https://openalex.org/W2158412800","https://openalex.org/W2201713963","https://openalex.org/W2226503394","https://openalex.org/W2230658567","https://openalex.org/W2315485810","https://openalex.org/W2316249707","https://openalex.org/W2326232872","https://openalex.org/W2347156038","https://openalex.org/W2547725887","https://openalex.org/W2558396410","https://openalex.org/W2588017397","https://openalex.org/W2742064996","https://openalex.org/W2755377387","https://openalex.org/W2757641730","https://openalex.org/W2765303151","https://openalex.org/W2768290498","https://openalex.org/W2772936471","https://openalex.org/W2793314862","https://openalex.org/W2794825320","https://openalex.org/W2799660409","https://openalex.org/W2807020340","https://openalex.org/W2887067015","https://openalex.org/W2908908773","https://openalex.org/W2921103387","https://openalex.org/W2921404852","https://openalex.org/W2926902278","https://openalex.org/W2931799209","https://openalex.org/W2932065142","https://openalex.org/W2944245644","https://openalex.org/W2951408101","https://openalex.org/W2954530659","https://openalex.org/W2966973738","https://openalex.org/W2972342264","https://openalex.org/W2983263886","https://openalex.org/W2988807245","https://openalex.org/W2995723120","https://openalex.org/W2996810675","https://openalex.org/W3006318771","https://openalex.org/W3042720497","https://openalex.org/W3098953572","https://openalex.org/W3100331332","https://openalex.org/W3118036451","https://openalex.org/W3120469888","https://openalex.org/W3149070638","https://openalex.org/W3161045761","https://openalex.org/W3165408190","https://openalex.org/W3177828909","https://openalex.org/W3209580699","https://openalex.org/W3209983558","https://openalex.org/W4211143571","https://openalex.org/W4285495020","https://openalex.org/W4288096022","https://openalex.org/W4306412091","https://openalex.org/W4306888844","https://openalex.org/W4308555726","https://openalex.org/W4313339743","https://openalex.org/W4376546127","https://openalex.org/W6664455222"],"related_works":["https://openalex.org/W3113932901","https://openalex.org/W650625605","https://openalex.org/W2801025257","https://openalex.org/W2551285827","https://openalex.org/W1919219501","https://openalex.org/W2027504272","https://openalex.org/W2069703662","https://openalex.org/W2372181157","https://openalex.org/W2759268906","https://openalex.org/W2347750628"],"abstract_inverted_index":{"Ion":[0],"mobility":[1],"coupled":[2],"to":[3,78,98,159],"mass":[4],"spectrometry":[5],"informs":[6],"on":[7,34,68],"the":[8,16,48,55,69,93,128],"shape":[9],"and":[10,133,156,172],"size":[11],"of":[12,18,125],"protein":[13,35,82,143],"structures":[14],"in":[15,137],"form":[17],"a":[19,65,150],"collision":[20],"cross":[21],"section":[22],"(CCSIM).":[23],"Although":[24],"there":[25],"are":[26,118],"several":[27],"computational":[28],"methods":[29],"for":[30],"predicting":[31],"CCSIM":[32,80,114,132],"based":[33],"structures,":[36],"including":[37],"our":[38,109],"previously":[39],"developed":[40],"projection":[41,85],"approximation":[42,86],"using":[43,84],"rough":[44],"circular":[45],"shapes":[46],"(PARCS),":[47],"process":[49],"usually":[50],"requires":[51],"prior":[52],"experience":[53],"with":[54,87,121,149],"command-line":[56],"interface.":[57],"To":[58],"overcome":[59],"this":[60,90,177],"challenge,":[61],"here":[62],"we":[63],"present":[64],"web":[66,91,163,170],"application":[67],"Rosetta":[70],"Online":[71],"Server":[72],"that":[73,113],"Includes":[74],"Everyone":[75],"(ROSIE)":[76],"webserver":[77],"predict":[79],"from":[81,108,140],"structure":[83,144],"PARCS.":[88],"In":[89],"interface,":[92,152],"user":[94],"is":[95,147,153,157,165],"only":[96],"required":[97],"provide":[99],"one":[100],"or":[101],"more":[102],"PDB":[103],"files":[104],"as":[105],"input.":[106],"Results":[107],"case":[110],"studies":[111],"suggest":[112],"predictions":[115],"(with":[116],"ROSIE-PARCS)":[117],"highly":[119],"accurate":[120,139],"an":[122],"average":[123],"error":[124],"6.12%.":[126],"Furthermore,":[127],"absolute":[129],"difference":[130],"between":[131],"CCSPARCS":[134],"can":[135,173],"help":[136],"distinguishing":[138],"inaccurate":[141],"AlphaFold2":[142],"predictions.":[145],"ROSIE-PARCS":[146,162],"designed":[148],"user-friendly":[151],"available":[154],"publicly":[155],"free":[158],"use.":[160],"The":[161],"interface":[164],"supported":[166],"by":[167],"all":[168],"major":[169],"browsers":[171],"be":[174],"accessed":[175],"via":[176],"link":[178],"(https://rosie.graylab.jhu.edu).":[179]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
