{"id":"https://openalex.org/W4385724393","doi":"https://doi.org/10.1093/bib/bbad280","title":"COWID: an efficient cloud-based genomics workflow for scalable identification of SARS-COV-2","display_name":"COWID: an efficient cloud-based genomics workflow for scalable identification of SARS-COV-2","publication_year":2023,"publication_date":"2023-08-09","ids":{"openalex":"https://openalex.org/W4385724393","doi":"https://doi.org/10.1093/bib/bbad280","pmid":"https://pubmed.ncbi.nlm.nih.gov/37738400"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad280","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad280","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad280/51076034/bbad280.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad280/51076034/bbad280.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031231012","display_name":"Hendrick Gao-Min Lim","orcid":"https://orcid.org/0000-0002-7963-4174"},"institutions":[{"id":"https://openalex.org/I47519274","display_name":"Taipei Medical University","ror":"https://ror.org/05031qk94","country_code":"TW","type":"education","lineage":["https://openalex.org/I47519274"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Hendrick Gao-Min Lim","raw_affiliation_strings":["Department of Medical Research, Tzu Chi Hospital Indonesia, Pantai Indah Kapuk, Greater Jakarta , Indonesia 14470","Graduate Institute of Biomedical Informatics , College of Medical Science and Technology, , Taipei , Taiwan 11031","Taipei Medical University , College of Medical Science and Technology, , Taipei , Taiwan 11031","Department of Medical Research, Tzu Chi Hospital Indonesia, Pantai Indah Kapuk, Greater Jakarta, Indonesia 14470","Graduate Institute of Biomedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei, Taiwan 11031"],"raw_orcid":"https://orcid.org/0000-0002-7963-4174","affiliations":[{"raw_affiliation_string":"Department of Medical Research, Tzu Chi Hospital Indonesia, Pantai Indah Kapuk, Greater Jakarta , Indonesia 14470","institution_ids":[]},{"raw_affiliation_string":"Graduate Institute of Biomedical Informatics , College of Medical Science and Technology, , Taipei , Taiwan 11031","institution_ids":["https://openalex.org/I47519274"]},{"raw_affiliation_string":"Taipei Medical University , College of Medical Science and Technology, , Taipei , Taiwan 11031","institution_ids":["https://openalex.org/I47519274"]},{"raw_affiliation_string":"Department of Medical Research, Tzu Chi Hospital Indonesia, Pantai Indah Kapuk, Greater Jakarta, Indonesia 14470","institution_ids":[]},{"raw_affiliation_string":"Graduate Institute of Biomedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei, Taiwan 11031","institution_ids":["https://openalex.org/I47519274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074798362","display_name":"Yang C. Fann","orcid":"https://orcid.org/0000-0003-2636-2002"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210110767","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210110767"]},{"id":"https://openalex.org/I4210145612","display_name":"Office of Extramural Research","ror":"https://ror.org/05aq6yn88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210091794","https://openalex.org/I4210145612"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yang C Fann","raw_affiliation_strings":["IT and Bioinformatics Program , Division of Intramural, , Bethesda, Maryland , USA 20892","National Institute of Neurological Disorders and Stroke, National Institutes of Health , Division of Intramural, , Bethesda, Maryland , USA 20892","IT and Bioinformatics Program, Division of Intramural, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, Maryland, USA 20892"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IT and Bioinformatics Program , Division of Intramural, , Bethesda, Maryland , USA 20892","institution_ids":["https://openalex.org/I4210145612"]},{"raw_affiliation_string":"National Institute of Neurological Disorders and Stroke, National Institutes of Health , Division of Intramural, , Bethesda, Maryland , USA 20892","institution_ids":["https://openalex.org/I4210110767","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"IT and Bioinformatics Program, Division of Intramural, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, Maryland, USA 20892","institution_ids":["https://openalex.org/I4210110767","https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088833172","display_name":"Yuan-Chii Gladys Lee","orcid":"https://orcid.org/0000-0002-5074-7941"},"institutions":[{"id":"https://openalex.org/I47519274","display_name":"Taipei Medical University","ror":"https://ror.org/05031qk94","country_code":"TW","type":"education","lineage":["https://openalex.org/I47519274"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Yuan-Chii Gladys Lee","raw_affiliation_strings":["Graduate Institute of Biomedical Informatics , College of Medical Science and Technology, , Taipei , Taiwan 11031","Taipei Medical University , College of Medical Science and Technology, , Taipei , Taiwan 11031","Graduate Institute of Biomedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei, Taiwan 11031"],"raw_orcid":"https://orcid.org/0000-0002-5074-7941","affiliations":[{"raw_affiliation_string":"Graduate Institute of Biomedical Informatics , College of Medical Science and Technology, , Taipei , Taiwan 11031","institution_ids":["https://openalex.org/I47519274"]},{"raw_affiliation_string":"Taipei Medical University , College of Medical Science and Technology, , Taipei , Taiwan 11031","institution_ids":["https://openalex.org/I47519274"]},{"raw_affiliation_string":"Graduate Institute of Biomedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei, Taiwan 11031","institution_ids":["https://openalex.org/I47519274"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5088833172"],"corresponding_institution_ids":["https://openalex.org/I47519274"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.1454,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.58429496,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"24","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9771000146865845,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8563834428787231},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.8405828475952148},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7865866422653198},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7395917773246765},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7270010113716125},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4133642911911011},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4019950032234192},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.14338117837905884},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.11435788869857788},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08652955293655396}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8563834428787231},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.8405828475952148},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7865866422653198},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7395917773246765},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7270010113716125},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4133642911911011},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4019950032234192},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.14338117837905884},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.11435788869857788},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08652955293655396},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbad280","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad280","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad280/51076034/bbad280.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37738400","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37738400","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10516370","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10516370","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10516370/pdf/bbad280.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbad280","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad280","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad280/51076034/bbad280.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.5699999928474426,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1234541941","display_name":null,"funder_award_id":"75N91019D00024","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1584997690","display_name":null,"funder_award_id":"17X146","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4258672507","display_name":null,"funder_award_id":"HHSN261201400008C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4689185066","display_name":null,"funder_award_id":"75N91019D00024","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G5255084490","display_name":null,"funder_award_id":"HHSN261201400008C","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6012682559","display_name":null,"funder_award_id":"HHSN261201500003I","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G8882569155","display_name":null,"funder_award_id":"HHSN261201500003I","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320309037","display_name":"Office of Research and Development","ror":"https://ror.org/05rsv9s98"},{"id":"https://openalex.org/F4320322814","display_name":"Taipei Medical University","ror":"https://ror.org/05031qk94"},{"id":"https://openalex.org/F4320331164","display_name":"National Science and Technology Council","ror":"https://ror.org/00wnb9798"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337157","display_name":"Instituto Nacional do C\u00e2ncer, Minist\u00e9rio da Sa\u00fade","ror":"https://ror.org/055n68305"},{"id":"https://openalex.org/F4320337244","display_name":"Office of Research and Development, Taipei Medical University","ror":null},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4385724393.pdf"},"referenced_works_count":80,"referenced_works":["https://openalex.org/W85108364","https://openalex.org/W306902674","https://openalex.org/W2036288429","https://openalex.org/W2061680337","https://openalex.org/W2067964678","https://openalex.org/W2096525273","https://openalex.org/W2110417468","https://openalex.org/W2113457186","https://openalex.org/W2141287548","https://openalex.org/W2158485828","https://openalex.org/W2166867592","https://openalex.org/W2168133698","https://openalex.org/W2173732482","https://openalex.org/W2296335794","https://openalex.org/W2302501749","https://openalex.org/W2396849069","https://openalex.org/W2605343262","https://openalex.org/W2605897695","https://openalex.org/W2762888391","https://openalex.org/W2765635284","https://openalex.org/W2770095154","https://openalex.org/W2785694006","https://openalex.org/W2796208126","https://openalex.org/W2808343649","https://openalex.org/W2951160681","https://openalex.org/W2954309769","https://openalex.org/W2968450569","https://openalex.org/W2971928433","https://openalex.org/W3001195213","https://openalex.org/W3001897055","https://openalex.org/W3004280078","https://openalex.org/W3004318991","https://openalex.org/W3008443627","https://openalex.org/W3010326174","https://openalex.org/W3016266726","https://openalex.org/W3022396962","https://openalex.org/W3046539942","https://openalex.org/W3048090444","https://openalex.org/W3084261392","https://openalex.org/W3092301334","https://openalex.org/W3093218166","https://openalex.org/W3098911933","https://openalex.org/W3113418104","https://openalex.org/W3122322496","https://openalex.org/W3131055609","https://openalex.org/W3133056041","https://openalex.org/W3180301457","https://openalex.org/W3184431613","https://openalex.org/W3199437591","https://openalex.org/W3200776886","https://openalex.org/W3205374494","https://openalex.org/W3206196051","https://openalex.org/W3208459100","https://openalex.org/W3211014030","https://openalex.org/W3214785274","https://openalex.org/W3215610096","https://openalex.org/W3216588755","https://openalex.org/W3217393346","https://openalex.org/W4200135473","https://openalex.org/W4200553915","https://openalex.org/W4205440119","https://openalex.org/W4220962429","https://openalex.org/W4220990048","https://openalex.org/W4221049439","https://openalex.org/W4223460124","https://openalex.org/W4223930334","https://openalex.org/W4224992781","https://openalex.org/W4225691034","https://openalex.org/W4229333670","https://openalex.org/W4286218372","https://openalex.org/W4289274885","https://openalex.org/W6610781447","https://openalex.org/W6674561012","https://openalex.org/W6697144307","https://openalex.org/W6744938664","https://openalex.org/W6746163975","https://openalex.org/W6781449518","https://openalex.org/W6802590447","https://openalex.org/W6949975182","https://openalex.org/W6991248244"],"related_works":["https://openalex.org/W4244478748","https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W4223488648","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W2134969820","https://openalex.org/W2251605416","https://openalex.org/W4389340727","https://openalex.org/W3181407718"],"abstract_inverted_index":{"Implementing":[0],"a":[1,19,30,63,125,165,173],"specific":[2],"cloud":[3,31,87],"resource":[4],"to":[5,43,51,89,151],"analyze":[6],"extensive":[7],"genomic":[8],"data":[9,120],"on":[10,39,49,66,142],"severe":[11],"acute":[12],"respiratory":[13],"syndrome":[14],"coronavirus":[15],"2":[16],"(SARS-CoV-2)":[17],"poses":[18],"challenge":[20],"when":[21],"resources":[22],"are":[23],"limited.":[24],"To":[25],"overcome":[26],"this,":[27],"we":[28],"repurposed":[29],"platform":[32],"initially":[33],"designed":[34,150],"for":[35,55,79,98],"use":[36,46,80],"in":[37,47,81],"research":[38,48],"cancer":[40],"genomics":[41],"(https://cgc.sbgenomics.com)":[42],"enable":[44],"its":[45],"SARS-CoV-2":[50,83],"build":[52],"Cloud":[53],"Workflow":[54,69],"Viral":[56],"and":[57,85,104,138],"Variant":[58],"Identification":[59],"(COWID).":[60],"COWID":[61,93,112,131,148,163],"is":[62,134,149,164],"workflow":[64],"based":[65],"the":[67,73],"Common":[68],"Language":[70],"that":[71,168],"realizes":[72],"full":[74],"potential":[75],"of":[76,117,127],"sequencing":[77,119],"technology":[78],"reliable":[82,105],"identification":[84,99,103],"leverages":[86],"computing":[88],"achieve":[90],"efficient":[91],"parallelization.":[92],"outperformed":[94],"other":[95],"contemporary":[96],"methods":[97],"by":[100],"offering":[101],"scalable":[102],"variant":[106],"findings":[107],"with":[108,145],"no":[109],"false-positive":[110],"results.":[111],"typically":[113],"processed":[114],"each":[115],"sample":[116],"raw":[118],"within":[121],"5":[122],"min":[123],"at":[124],"cost":[126],"only":[128],"US$0.01.":[129],"The":[130],"source":[132],"code":[133],"publicly":[135],"available":[136],"(https://github.com/hendrick0403/COWID)":[137],"can":[139,155,169],"be":[140,152,156,170],"accessed":[141],"any":[143],"computer":[144],"Internet":[146],"access.":[147],"user-friendly;":[153],"it":[154],"implemented":[157],"without":[158],"prior":[159],"programming":[160],"knowledge.":[161],"Therefore,":[162],"time-efficient":[166],"tool":[167],"used":[171],"during":[172],"pandemic.":[174]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}