{"id":"https://openalex.org/W4385295865","doi":"https://doi.org/10.1093/bib/bbad269","title":"AFEI: adaptive optimized vertical federated learning for heterogeneous multi-omics data integration","display_name":"AFEI: adaptive optimized vertical federated learning for heterogeneous multi-omics data integration","publication_year":2023,"publication_date":"2023-07-26","ids":{"openalex":"https://openalex.org/W4385295865","doi":"https://doi.org/10.1093/bib/bbad269","pmid":"https://pubmed.ncbi.nlm.nih.gov/37497720"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad269","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad269","pdf_url":"https://academic.oup.com/bib/article-pdf/24/5/bbad269/51710788/bbad269.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/5/bbad269/51710788/bbad269.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Qingyong Wang","orcid":"https://orcid.org/0009-0000-0686-836X"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qingyong Wang","raw_affiliation_strings":["School of Information and Computer, Anhui Agricultural University , Hefei 230000 , China"],"raw_orcid":"https://orcid.org/0009-0000-0686-836X","affiliations":[{"raw_affiliation_string":"School of Information and Computer, Anhui Agricultural University , Hefei 230000 , China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022394072","display_name":"Minfan He","orcid":null},"institutions":[{"id":"https://openalex.org/I14894300","display_name":"Foshan University","ror":"https://ror.org/02xvvvp28","country_code":"CN","type":"education","lineage":["https://openalex.org/I14894300"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Minfan He","raw_affiliation_strings":["School of Mathematics and Big Data, Foshan University , Foshan 528000 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics and Big Data, Foshan University , Foshan 528000 , China","institution_ids":["https://openalex.org/I14894300"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010238382","display_name":"Long-Yi Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210105984","display_name":"Guangdong Provincial Hospital of Traditional Chinese Medicine","ror":"https://ror.org/01gb3y148","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210105984"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Longyi Guo","raw_affiliation_strings":["Guangdong Provincial Hospital of Traditional Chinese Medical , Guangzhou 510000 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangdong Provincial Hospital of Traditional Chinese Medical , Guangzhou 510000 , China","institution_ids":["https://openalex.org/I4210105984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037747202","display_name":"Hua Chai","orcid":"https://orcid.org/0009-0006-8889-5102"},"institutions":[{"id":"https://openalex.org/I14894300","display_name":"Foshan University","ror":"https://ror.org/02xvvvp28","country_code":"CN","type":"education","lineage":["https://openalex.org/I14894300"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hua Chai","raw_affiliation_strings":["School of Mathematics and Big Data, Foshan University , Foshan 528000 , China"],"raw_orcid":"https://orcid.org/0009-0006-8889-5102","affiliations":[{"raw_affiliation_string":"School of Mathematics and Big Data, Foshan University , Foshan 528000 , China","institution_ids":["https://openalex.org/I14894300"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5037747202"],"corresponding_institution_ids":["https://openalex.org/I14894300"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.5004,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.93169458,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"24","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10764","display_name":"Privacy-Preserving Technologies in Data","score":0.9818000197410583,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.6949857473373413},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6762763261795044},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5361423492431641},{"id":"https://openalex.org/keywords/popularity","display_name":"Popularity","score":0.5138962268829346},{"id":"https://openalex.org/keywords/federated-learning","display_name":"Federated learning","score":0.5017495155334473},{"id":"https://openalex.org/keywords/encryption","display_name":"Encryption","score":0.5015449523925781},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.4633304178714752},{"id":"https://openalex.org/keywords/information-privacy","display_name":"Information privacy","score":0.425223171710968},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.388944149017334},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.353801429271698},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17176377773284912},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.14144161343574524},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.13124486804008484},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.12190762162208557}],"concepts":[{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.6949857473373413},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6762763261795044},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5361423492431641},{"id":"https://openalex.org/C2780586970","wikidata":"https://www.wikidata.org/wiki/Q1357284","display_name":"Popularity","level":2,"score":0.5138962268829346},{"id":"https://openalex.org/C2992525071","wikidata":"https://www.wikidata.org/wiki/Q50818671","display_name":"Federated learning","level":2,"score":0.5017495155334473},{"id":"https://openalex.org/C148730421","wikidata":"https://www.wikidata.org/wiki/Q141090","display_name":"Encryption","level":2,"score":0.5015449523925781},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.4633304178714752},{"id":"https://openalex.org/C123201435","wikidata":"https://www.wikidata.org/wiki/Q456632","display_name":"Information privacy","level":2,"score":0.425223171710968},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.388944149017334},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.353801429271698},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17176377773284912},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.14144161343574524},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.13124486804008484},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.12190762162208557},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C77805123","wikidata":"https://www.wikidata.org/wiki/Q161272","display_name":"Social psychology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018907","descriptor_name":"Privacy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018907","descriptor_name":"Privacy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018907","descriptor_name":"Privacy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad269","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad269","pdf_url":"https://academic.oup.com/bib/article-pdf/24/5/bbad269/51710788/bbad269.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37497720","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37497720","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbad269","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad269","pdf_url":"https://academic.oup.com/bib/article-pdf/24/5/bbad269/51710788/bbad269.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.5}],"awards":[{"id":"https://openalex.org/G4774180219","display_name":null,"funder_award_id":"rc482210","funder_id":"https://openalex.org/F4320323887","funder_display_name":"Anhui Agricultural University"},{"id":"https://openalex.org/G8595978569","display_name":null,"funder_award_id":"62201150","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323887","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4385295865.pdf"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1986352281","https://openalex.org/W2032284233","https://openalex.org/W2258675270","https://openalex.org/W2753919178","https://openalex.org/W2765219164","https://openalex.org/W2767092306","https://openalex.org/W2797870998","https://openalex.org/W2951209146","https://openalex.org/W2963819344","https://openalex.org/W2991209658","https://openalex.org/W2995276890","https://openalex.org/W3012736453","https://openalex.org/W3018464563","https://openalex.org/W3112653481","https://openalex.org/W3130016916","https://openalex.org/W3147894994","https://openalex.org/W3162569201","https://openalex.org/W3163443268","https://openalex.org/W3191869388","https://openalex.org/W3192677404","https://openalex.org/W3214142560","https://openalex.org/W4205529838","https://openalex.org/W4206647593","https://openalex.org/W4206956476","https://openalex.org/W4210508597","https://openalex.org/W4214626077","https://openalex.org/W4214758645","https://openalex.org/W4221158003","https://openalex.org/W4226057940","https://openalex.org/W4226461837","https://openalex.org/W4280617223","https://openalex.org/W4283714314","https://openalex.org/W4284694767","https://openalex.org/W4295806247","https://openalex.org/W4308608169","https://openalex.org/W4312831152","https://openalex.org/W4367397315","https://openalex.org/W6637790697","https://openalex.org/W6724184500","https://openalex.org/W6769810102","https://openalex.org/W6781950921","https://openalex.org/W6803930324","https://openalex.org/W6805014010","https://openalex.org/W6810816074"],"related_works":["https://openalex.org/W2788286722","https://openalex.org/W2976952765","https://openalex.org/W3215632853","https://openalex.org/W2042445733","https://openalex.org/W2924366642","https://openalex.org/W3173693863","https://openalex.org/W2923927413","https://openalex.org/W4309006001","https://openalex.org/W3173875945","https://openalex.org/W4310366084"],"abstract_inverted_index":{"Vertical":[0],"federated":[1,120],"learning":[2,121,152],"has":[3,26],"gained":[4],"popularity":[5],"as":[6,86,205,207,220],"a":[7,42],"means":[8],"of":[9,62,235],"enabling":[10],"collaboration":[11,230],"and":[12,22,35,102,166,201,231],"information":[13,55,154],"sharing":[14],"between":[15],"different":[16,60,160,199],"entities":[17],"while":[18],"maintaining":[19],"data":[20,39,48,64,82,97,125,131,191,197],"privacy":[21,40,101],"security.":[23],"This":[24],"approach":[25],"potential":[27],"applications":[28],"in":[29,72],"disease":[30],"healthcare,":[31],"cancer":[32,50,137,157,236],"prognosis":[33,51,138,208,237],"prediction,":[34],"other":[36],"industries":[37],"where":[38],"is":[41],"major":[43],"concern.":[44],"Although":[45],"using":[46,188],"multi-omics":[47,124,130,168,196,213],"for":[49,56,122,136,151,224],"prediction":[52,182,209],"provides":[53],"more":[54,153],"treatment":[57],"selection,":[58],"collecting":[59],"types":[61],"omics":[63,190],"can":[65,217],"be":[66,106,218],"challenging":[67],"due":[68],"to":[69,128,144,156,228],"their":[70],"production":[71],"various":[73],"medical":[74],"institutions.":[75,173],"Data":[76,91],"owners":[77],"must":[78,105],"comply":[79],"with":[80],"strict":[81],"protection":[83],"regulations":[84],"such":[85],"European":[87],"Union":[88],"(EU)":[89],"General":[90],"Protection":[92],"Regulation.":[93],"To":[94],"share":[95],"patient":[96],"across":[98],"multiple":[99,134,172],"institutions,":[100,200],"security":[103],"issues":[104],"addressed.":[107],"Therefore,":[108],"we":[109],"propose":[110],"an":[111,146,221],"adaptive":[112,117],"optimized":[113,118],"vertical":[114,119],"federated-learning-based":[115],"framework":[116],"heterogeneous":[123],"integration":[126],"(AFEI)":[127],"integrate":[129],"collected":[132],"from":[133,159,198],"institutions":[135],"prediction.":[139,238],"AFEI":[140,179,216],"enables":[141],"participating":[142],"parties":[143],"build":[145],"accurate":[147],"joint":[148],"evaluation":[149],"model":[150],"related":[155],"patients":[158],"perspectives,":[161],"based":[162],"on":[163,185],"the":[164,194,233],"distributed":[165],"encrypted":[167,195],"features":[169],"shared":[170],"by":[171,192,210],"The":[174],"experimental":[175],"results":[176],"demonstrate":[177],"that":[178],"achieves":[180],"higher":[181],"accuracy":[183],"(6.5%":[184],"average)":[186],"than":[187],"single":[189],"utilizing":[193],"it":[202],"performs":[203],"almost":[204],"well":[206],"directly":[211],"integrating":[212],"data.":[214],"Overall,":[215],"seen":[219],"efficient":[222],"solution":[223],"breaking":[225],"down":[226],"barriers":[227],"multi-institutional":[229],"promoting":[232],"development":[234]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-11T18:08:03.149640","created_date":"2025-10-10T00:00:00"}
