{"id":"https://openalex.org/W4384920696","doi":"https://doi.org/10.1093/bib/bbad264","title":"HMMPolish: a coding region polishing tool for TGS-sequenced RNA viruses","display_name":"HMMPolish: a coding region polishing tool for TGS-sequenced RNA viruses","publication_year":2023,"publication_date":"2023-06-30","ids":{"openalex":"https://openalex.org/W4384920696","doi":"https://doi.org/10.1093/bib/bbad264","pmid":"https://pubmed.ncbi.nlm.nih.gov/37478372"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad264","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad264","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad264/50926004/bbad264.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad264/50926004/bbad264.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002875850","display_name":"Runzhou Yu","orcid":"https://orcid.org/0000-0001-9496-3112"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Runzhou Yu","raw_affiliation_strings":["Electrical Engineering, City University of Hong Kong , Tat Chee Avenue, Kowloon, Hong Kong , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering, City University of Hong Kong , Tat Chee Avenue, Kowloon, Hong Kong , China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040488781","display_name":"Syed Muhammad Abdullah","orcid":"https://orcid.org/0000-0002-7334-0722"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Syed Muhammad Umer Abdullah","raw_affiliation_strings":["Electrical Engineering, City University of Hong Kong , Tat Chee Avenue, Kowloon, Hong Kong , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering, City University of Hong Kong , Tat Chee Avenue, Kowloon, Hong Kong , China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081855118","display_name":"Yanni Sun","orcid":"https://orcid.org/0000-0003-1373-8023"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Yanni Sun","raw_affiliation_strings":["Electrical Engineering, City University of Hong Kong , Tat Chee Avenue, Kowloon, Hong Kong , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering, City University of Hong Kong , Tat Chee Avenue, Kowloon, Hong Kong , China","institution_ids":["https://openalex.org/I168719708"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5081855118"],"corresponding_institution_ids":["https://openalex.org/I168719708"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.2871,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.72398678,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"24","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11112","display_name":"Viral Infections and Immunology Research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11495","display_name":"Animal Virus Infections Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/polishing","display_name":"Polishing","score":0.6929516792297363},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6161022186279297},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.49962806701660156},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4530016779899597},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.38143420219421387},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3753119707107544},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.33959275484085083},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25236278772354126},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18485629558563232},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12025904655456543},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.09855383634567261},{"id":"https://openalex.org/keywords/metallurgy","display_name":"Metallurgy","score":0.08234590291976929}],"concepts":[{"id":"https://openalex.org/C138113353","wikidata":"https://www.wikidata.org/wiki/Q611639","display_name":"Polishing","level":2,"score":0.6929516792297363},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6161022186279297},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.49962806701660156},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4530016779899597},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.38143420219421387},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3753119707107544},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.33959275484085083},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25236278772354126},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18485629558563232},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12025904655456543},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.09855383634567261},{"id":"https://openalex.org/C191897082","wikidata":"https://www.wikidata.org/wiki/Q11467","display_name":"Metallurgy","level":1,"score":0.08234590291976929},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012328","descriptor_name":"RNA Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbad264","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad264","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad264/50926004/bbad264.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37478372","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37478372","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10516367","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10516367","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10516367/pdf/bbad264.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/0e820cfa-dd53-4237-9eb9-9d9d621023f6","is_oa":true,"landing_page_url":"https://hdl.handle.net/2031/0e820cfa-dd53-4237-9eb9-9d9d621023f6","pdf_url":null,"source":{"id":"https://openalex.org/S7407055387","display_name":"CityU Scholars","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Yu, R, Abdullah, S M U & Sun, Y 2023, 'HMMPolish : a coding region polishing tool for TGS-sequenced RNA viruses', Briefings in Bioinformatics, vol. 24, no. 5, bbad264. https://doi.org/10.1093/bib/bbad264","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbad264","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad264","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad264/50926004/bbad264.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.5299999713897705}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4384920696.pdf","grobid_xml":"https://content.openalex.org/works/W4384920696.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W904528897","https://openalex.org/W1570518269","https://openalex.org/W1930242224","https://openalex.org/W1983360668","https://openalex.org/W1983403167","https://openalex.org/W1991133427","https://openalex.org/W2012129034","https://openalex.org/W2032136448","https://openalex.org/W2042777577","https://openalex.org/W2056298444","https://openalex.org/W2068527059","https://openalex.org/W2075810156","https://openalex.org/W2096634299","https://openalex.org/W2108588173","https://openalex.org/W2112128796","https://openalex.org/W2132341951","https://openalex.org/W2141978199","https://openalex.org/W2147634297","https://openalex.org/W2151831732","https://openalex.org/W2170946314","https://openalex.org/W2171540341","https://openalex.org/W2280128538","https://openalex.org/W2415697913","https://openalex.org/W2508245111","https://openalex.org/W2526857311","https://openalex.org/W2550586733","https://openalex.org/W2575750030","https://openalex.org/W2790622759","https://openalex.org/W2797474345","https://openalex.org/W2890852354","https://openalex.org/W2912969461","https://openalex.org/W2914303958","https://openalex.org/W2929062889","https://openalex.org/W2950266744","https://openalex.org/W2950354111","https://openalex.org/W2991295831","https://openalex.org/W3004375074","https://openalex.org/W3006627046","https://openalex.org/W3007886991","https://openalex.org/W3015565387","https://openalex.org/W3049393863","https://openalex.org/W3135813722","https://openalex.org/W3147254695","https://openalex.org/W3164465449","https://openalex.org/W3199048638","https://openalex.org/W4210837816","https://openalex.org/W4211262581","https://openalex.org/W4245668478","https://openalex.org/W4254425582","https://openalex.org/W4295094885","https://openalex.org/W4307584346","https://openalex.org/W4308683905","https://openalex.org/W4312179680","https://openalex.org/W6682627296","https://openalex.org/W6729804952","https://openalex.org/W6754177122","https://openalex.org/W6773431368"],"related_works":["https://openalex.org/W2355958986","https://openalex.org/W2359200184","https://openalex.org/W2366623665","https://openalex.org/W3035613609","https://openalex.org/W2037225514","https://openalex.org/W2061253909","https://openalex.org/W2977384378","https://openalex.org/W2381926258","https://openalex.org/W2386760886","https://openalex.org/W2374920256"],"abstract_inverted_index":{"Access":[0],"to":[1,7,42,51,71,77,125],"accurate":[2,80],"viral":[3],"genomes":[4,43],"is":[5,35,68],"important":[6,171],"downstream":[8],"data":[9],"analysis.":[10],"Third-generation":[11],"sequencing":[12,22,193],"(TGS)":[13],"has":[14],"recently":[15],"become":[16],"a":[17,105],"popular":[18],"platform":[19],"for":[20,109],"virus":[21],"because":[23],"of":[24,63,116,134,144,217],"its":[25,30],"long":[26],"read":[27],"length.":[28],"However,":[29],"per-base":[31],"error":[32,74,212],"rate,":[33],"which":[34],"higher":[36],"than":[37],"next-generation":[38],"sequencing,":[39],"can":[40,90,122,151],"lead":[41],"with":[44,188],"errors.":[45],"Polishing":[46],"tools":[47],"are":[48,155],"thus":[49],"needed":[50],"correct":[52,152],"errors":[53,112,153],"either":[54,126],"before":[55],"or":[56,130,198],"after":[57],"sequence":[58],"assembly.":[59,82],"Despite":[60],"promising":[61],"results":[62,202],"available":[64,158],"polishing":[65],"tools,":[66],"there":[67],"still":[69],"room":[70],"improve":[72],"the":[73,131,135],"correction":[75,213],"performance":[76],"perform":[78],"more":[79],"genome":[81],"The":[83,200],"errors,":[84],"particularly":[85],"those":[86],"in":[87,113,147,214],"coding":[88,215],"regions,":[89],"hamper":[91],"analysis":[92],"such":[93,191],"as":[94,192],"linage":[95],"identification":[96],"and":[97,177,195],"variant":[98],"monitoring.":[99],"In":[100],"this":[101],"work,":[102],"we":[103],"developed":[104],"novel":[106],"pipeline,":[107],"HMMPolish,":[108],"correcting":[110],"(polishing)":[111],"protein-coding":[114],"regions":[115,216],"known":[117,148,218],"RNA":[118,219],"viruses.":[119,220],"This":[120],"tool":[121],"be":[123],"applied":[124],"raw":[127],"TGS":[128],"reads":[129,187],"assembled":[132],"sequences":[133],"target":[136],"virus.":[137],"By":[138],"utilizing":[139],"profile":[140],"Hidden":[141],"Markov":[142],"Models":[143],"protein":[145],"families/domains":[146],"viruses,":[149,172],"HMMPolish":[150,163,208],"that":[154,167,207],"ignored":[156],"by":[157],"polishers.":[159],"We":[160],"extensively":[161],"validated":[162],"on":[164,211],"34":[165],"datasets":[166,185],"covered":[168],"four":[169],"clinically":[170],"including":[173],"HIV-1,":[174],"influenza-A,":[175],"norovirus,":[176],"severe":[178],"acute":[179],"respiratory":[180],"syndrome":[181],"coronavirus":[182],"2.":[183],"These":[184],"contain":[186],"different":[189],"properties,":[190],"depth":[194],"platforms":[196],"(PacBio":[197],"Nanopore).":[199],"benchmark":[201],"against":[203],"popular/representative":[204],"polishers":[205],"show":[206],"competes":[209],"favorably":[210]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}