{"id":"https://openalex.org/W4385073318","doi":"https://doi.org/10.1093/bib/bbad261","title":"HNSPPI: a hybrid computational model combing network and sequence information for predicting protein\u2013protein interaction","display_name":"HNSPPI: a hybrid computational model combing network and sequence information for predicting protein\u2013protein interaction","publication_year":2023,"publication_date":"2023-07-21","ids":{"openalex":"https://openalex.org/W4385073318","doi":"https://doi.org/10.1093/bib/bbad261","pmid":"https://pubmed.ncbi.nlm.nih.gov/37480553"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad261","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad261","pdf_url":"https://academic.oup.com/bib/article-pdf/24/5/bbad261/51711240/bbad261.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/5/bbad261/51711240/bbad261.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100948427","display_name":"Shijie Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shijie Xie","raw_affiliation_strings":["College of Artificial Intelligence, Nanjing Agricultural University , No. 1 Weigang Rd, Nanjing, Jiangsu 210095 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Artificial Intelligence, Nanjing Agricultural University , No. 1 Weigang Rd, Nanjing, Jiangsu 210095 , China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101674704","display_name":"Xiaojun Xie","orcid":"https://orcid.org/0000-0002-4848-1099"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaojun Xie","raw_affiliation_strings":["College of Artificial Intelligence, Nanjing Agricultural University , No. 1 Weigang Rd, Nanjing, Jiangsu 210095 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Artificial Intelligence, Nanjing Agricultural University , No. 1 Weigang Rd, Nanjing, Jiangsu 210095 , China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112914627","display_name":"Xin Zhao","orcid":"https://orcid.org/0000-0002-8170-1583"},"institutions":[{"id":"https://openalex.org/I183519381","display_name":"Capital Medical University","ror":"https://ror.org/013xs5b60","country_code":"CN","type":"education","lineage":["https://openalex.org/I183519381"]},{"id":"https://openalex.org/I2800232565","display_name":"Beijing Chao-Yang Hospital, Capital Medical University","ror":"https://ror.org/01eff5662","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2800232565","https://openalex.org/I4210110145","https://openalex.org/I4210135108"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Zhao","raw_affiliation_strings":["Department of Hepatobiliary Surgery, Beijing Chaoyang Hospital affiliated to Capital Medical University , Beijing 100020 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Hepatobiliary Surgery, Beijing Chaoyang Hospital affiliated to Capital Medical University , Beijing 100020 , China","institution_ids":["https://openalex.org/I2800232565","https://openalex.org/I183519381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100394689","display_name":"Fei Liu","orcid":"https://orcid.org/0000-0003-2811-9479"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fei Liu","raw_affiliation_strings":["Joint International Research Laboratory of Animal Health and Food Safety of Ministry of Education & Single Molecule Nanometry Laboratory (Sinmolab), Nanjing Agricultural University , Nanjing, Jiangsu 210095 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint International Research Laboratory of Animal Health and Food Safety of Ministry of Education & Single Molecule Nanometry Laboratory (Sinmolab), Nanjing Agricultural University , Nanjing, Jiangsu 210095 , China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100377946","display_name":"Yiming Wang","orcid":"https://orcid.org/0000-0003-0513-9039"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiming Wang","raw_affiliation_strings":["Key Laboratory of Biological Interactions and Crop Health , Department of Plant Pathology, , 210095, Nanjing , China","Nanjing Agricultural University , Department of Plant Pathology, , 210095, Nanjing , China","Key Laboratory of Biological Interactions and Crop Health, Department of Plant Pathology, Nanjing Agricultural University, 210095, Nanjing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Biological Interactions and Crop Health , Department of Plant Pathology, , 210095, Nanjing , China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Nanjing Agricultural University , Department of Plant Pathology, , 210095, Nanjing , China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Key Laboratory of Biological Interactions and Crop Health, Department of Plant Pathology, Nanjing Agricultural University, 210095, Nanjing, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108136020","display_name":"Jihui Ping","orcid":null},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]},{"id":"https://openalex.org/I4210130538","display_name":"Model Animal Research Center","ror":"https://ror.org/03h4e4c54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210130538"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jihui Ping","raw_affiliation_strings":["MOE International Joint Collaborative Research Laboratory for Animal Health and Food Safety & Jiangsu Engineering Laboratory of Animal Immunology , College of Veterinary Medicine, , Nanjing, Jiangsu 210095 , China","Nanjing Agricultural University , College of Veterinary Medicine, , Nanjing, Jiangsu 210095 , China","MOE International Joint Collaborative Research Laboratory for Animal Health and Food Safety & Jiangsu Engineering Laboratory of Animal Immunology, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MOE International Joint Collaborative Research Laboratory for Animal Health and Food Safety & Jiangsu Engineering Laboratory of Animal Immunology , College of Veterinary Medicine, , Nanjing, Jiangsu 210095 , China","institution_ids":["https://openalex.org/I4210130538"]},{"raw_affiliation_string":"Nanjing Agricultural University , College of Veterinary Medicine, , Nanjing, Jiangsu 210095 , China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"MOE International Joint Collaborative Research Laboratory for Animal Health and Food Safety & Jiangsu Engineering Laboratory of Animal Immunology, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102794567","display_name":"Zhiwei Ji","orcid":"https://orcid.org/0000-0002-0891-7118"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhiwei Ji","raw_affiliation_strings":["College of Artificial Intelligence, Nanjing Agricultural University , No. 1 Weigang Rd, Nanjing, Jiangsu 210095 , China"],"raw_orcid":"https://orcid.org/0000-0002-0891-7118","affiliations":[{"raw_affiliation_string":"College of Artificial Intelligence, Nanjing Agricultural University , No. 1 Weigang Rd, Nanjing, Jiangsu 210095 , China","institution_ids":["https://openalex.org/I119454577"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5102794567"],"corresponding_institution_ids":["https://openalex.org/I119454577"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.8151,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.93847948,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"24","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/combing","display_name":"Combing","score":0.9549320936203003},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6690990328788757},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5658540725708008},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5228866934776306},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4640938639640808},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37055522203445435},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.154779314994812},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13547194004058838}],"concepts":[{"id":"https://openalex.org/C2778952367","wikidata":"https://www.wikidata.org/wiki/Q3491532","display_name":"Combing","level":2,"score":0.9549320936203003},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6690990328788757},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5658540725708008},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5228866934776306},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4640938639640808},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37055522203445435},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.154779314994812},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13547194004058838},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad261","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad261","pdf_url":"https://academic.oup.com/bib/article-pdf/24/5/bbad261/51711240/bbad261.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37480553","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37480553","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbad261","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad261","pdf_url":"https://academic.oup.com/bib/article-pdf/24/5/bbad261/51711240/bbad261.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5,"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production"}],"awards":[{"id":"https://openalex.org/G1166967208","display_name":null,"funder_award_id":"106/804001","funder_id":"https://openalex.org/F4320338464","funder_display_name":"Natural Science Foundation of Zhejiang Province"},{"id":"https://openalex.org/G2052171678","display_name":null,"funder_award_id":"106/804001","funder_id":"https://openalex.org/F4320325211","funder_display_name":"Nanjing Agricultural University"},{"id":"https://openalex.org/G2891479119","display_name":null,"funder_award_id":"LY20F020003","funder_id":"https://openalex.org/F4320338464","funder_display_name":"Natural Science Foundation of Zhejiang Province"},{"id":"https://openalex.org/G6334523440","display_name":null,"funder_award_id":"KYCXJC2022005","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G7502127264","display_name":null,"funder_award_id":"BK20211210","funder_id":"https://openalex.org/F4320322769","funder_display_name":"Natural Science Foundation of Jiangsu Province"},{"id":"https://openalex.org/G8459681069","display_name":null,"funder_award_id":"LY20F020003","funder_id":"https://openalex.org/F4320325211","funder_display_name":"Nanjing Agricultural University"}],"funders":[{"id":"https://openalex.org/F4320321605","display_name":"Government of Jiangsu Province","ror":"https://ror.org/004svx814"},{"id":"https://openalex.org/F4320322769","display_name":"Natural Science Foundation of Jiangsu Province","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320325211","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null},{"id":"https://openalex.org/F4320338464","display_name":"Natural Science Foundation of Zhejiang Province","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4385073318.pdf","grobid_xml":"https://content.openalex.org/works/W4385073318.grobid-xml"},"referenced_works_count":104,"referenced_works":["https://openalex.org/W327733334","https://openalex.org/W1485424996","https://openalex.org/W1501531009","https://openalex.org/W1518399713","https://openalex.org/W1555380614","https://openalex.org/W1564861448","https://openalex.org/W1569737167","https://openalex.org/W1848976125","https://openalex.org/W1926568554","https://openalex.org/W1965410913","https://openalex.org/W1969499006","https://openalex.org/W1971106435","https://openalex.org/W1973459793","https://openalex.org/W1975888060","https://openalex.org/W1976526581","https://openalex.org/W1976952616","https://openalex.org/W1977186059","https://openalex.org/W1988469564","https://openalex.org/W2001649652","https://openalex.org/W2013729196","https://openalex.org/W2022106826","https://openalex.org/W2027001671","https://openalex.org/W2029574260","https://openalex.org/W2040941311","https://openalex.org/W2043764521","https://openalex.org/W2044523575","https://openalex.org/W2045131140","https://openalex.org/W2046105675","https://openalex.org/W2096428863","https://openalex.org/W2097546406","https://openalex.org/W2106391842","https://openalex.org/W2122683221","https://openalex.org/W2130687290","https://openalex.org/W2130832525","https://openalex.org/W2131571251","https://openalex.org/W2134206588","https://openalex.org/W2145287259","https://openalex.org/W2149676146","https://openalex.org/W2150452800","https://openalex.org/W2152568394","https://openalex.org/W2158698691","https://openalex.org/W2159710424","https://openalex.org/W2161922860","https://openalex.org/W2163965664","https://openalex.org/W2213735563","https://openalex.org/W2344506599","https://openalex.org/W2404463613","https://openalex.org/W2612872092","https://openalex.org/W2618265628","https://openalex.org/W2748668722","https://openalex.org/W2754618022","https://openalex.org/W2808890768","https://openalex.org/W2890911678","https://openalex.org/W2898130023","https://openalex.org/W2900569176","https://openalex.org/W2908914784","https://openalex.org/W2911930496","https://openalex.org/W2951422523","https://openalex.org/W2952253955","https://openalex.org/W2973068008","https://openalex.org/W3007643904","https://openalex.org/W3010441732","https://openalex.org/W3014067025","https://openalex.org/W3022285953","https://openalex.org/W3045012301","https://openalex.org/W3109916301","https://openalex.org/W3111467036","https://openalex.org/W3115832826","https://openalex.org/W3115880421","https://openalex.org/W3120421331","https://openalex.org/W3127077556","https://openalex.org/W3157065614","https://openalex.org/W3163969724","https://openalex.org/W3177500196","https://openalex.org/W3194873052","https://openalex.org/W3196969148","https://openalex.org/W3199468887","https://openalex.org/W3203741962","https://openalex.org/W3209369100","https://openalex.org/W3213410019","https://openalex.org/W4200560825","https://openalex.org/W4200592961","https://openalex.org/W4213041764","https://openalex.org/W4224266664","https://openalex.org/W4233120011","https://openalex.org/W4234849104","https://openalex.org/W4242716081","https://openalex.org/W4283656420","https://openalex.org/W4295107433","https://openalex.org/W4296293027","https://openalex.org/W4304080474","https://openalex.org/W4313492928","https://openalex.org/W6611292581","https://openalex.org/W6632767048","https://openalex.org/W6657447145","https://openalex.org/W6679713772","https://openalex.org/W6681941914","https://openalex.org/W6704857420","https://openalex.org/W6743031260","https://openalex.org/W6758062058","https://openalex.org/W6790586983","https://openalex.org/W6796722389","https://openalex.org/W6821113053","https://openalex.org/W6848806420"],"related_works":["https://openalex.org/W2382950503","https://openalex.org/W2099982459","https://openalex.org/W1982038138","https://openalex.org/W2109298101","https://openalex.org/W2007507741","https://openalex.org/W2159860826","https://openalex.org/W4390876228","https://openalex.org/W3192210502","https://openalex.org/W1998222399","https://openalex.org/W4381715389"],"abstract_inverted_index":{"Most":[0],"life":[1],"activities":[2],"in":[3,45],"organisms":[4],"are":[5,11,28,68,104],"regulated":[6],"through":[7],"protein":[8,54,89,94,207],"complexes,":[9],"which":[10,56],"mainly":[12],"controlled":[13],"via":[14],"Protein-Protein":[15],"Interactions":[16],"(PPIs).":[17],"Discovering":[18],"new":[19,206],"interactions":[20,208],"between":[21,138],"proteins":[22,140],"and":[23,40,65,101,147,192],"revealing":[24],"their":[25],"biological":[26,38],"functions":[27],"of":[29,37,93,150],"great":[30],"significance":[31],"for":[32,83,109,204],"understanding":[33],"the":[34,42,70,106,110,135,167,183,188],"molecular":[35],"mechanisms":[36],"processes":[39],"identifying":[41],"potential":[43,195],"targets":[44],"drug":[46],"discovery.":[47],"Current":[48],"experimental":[49,154],"methods":[50,78],"only":[51,87],"capture":[52],"stable":[53],"interactions,":[55],"lead":[57],"to":[58,123,186],"limited":[59],"coverage.":[60],"In":[61,73,113,197],"addition,":[62],"expensive":[63],"cost":[64],"time":[66],"consuming":[67],"also":[69],"obvious":[71],"shortcomings.":[72],"recent":[74],"years,":[75],"various":[76],"computational":[77,120],"have":[79],"been":[80],"successfully":[81],"developed":[82],"predicting":[84,205],"PPIs":[85],"based":[86],"on":[88,162],"homology,":[90],"primary":[91],"sequences":[92],"or":[95],"gene":[96],"ontology":[97],"information.":[98],"Computational":[99],"efficiency":[100],"data":[102],"complexity":[103],"still":[105],"main":[107],"bottlenecks":[108],"algorithm":[111],"generalization.":[112],"this":[114],"study,":[115],"we":[116,181],"proposed":[117],"a":[118,127,201],"novel":[119],"framework,":[121],"HNSPPI,":[122],"predict":[124],"PPIs.":[125],"As":[126],"hybrid":[128],"supervised":[129],"learning":[130],"model,":[131],"HNSPPI":[132,158,184,199],"comprehensively":[133],"characterizes":[134],"intrinsic":[136],"relationship":[137],"two":[139],"by":[141],"integrating":[142],"amino":[143],"acid":[144],"sequence":[145],"information":[146],"connection":[148],"properties":[149],"PPI":[151,211],"network.":[152],"The":[153],"results":[155],"show":[156],"that":[157,171],"works":[159],"very":[160],"well":[161],"six":[163],"benchmark":[164],"datasets.":[165],"Moreover,":[166],"comparison":[168],"analysis":[169],"proved":[170],"our":[172],"model":[173,185,203],"significantly":[174],"outperforms":[175],"other":[176],"five":[177],"existing":[178],"algorithms.":[179],"Finally,":[180],"used":[182],"explore":[187],"SARS-CoV-2-Human":[189],"interaction":[190],"system":[191],"found":[193],"several":[194],"regulations.":[196],"summary,":[198],"is":[200],"promising":[202],"from":[209],"known":[210],"data.":[212]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":3}],"updated_date":"2026-06-20T22:02:38.213706","created_date":"2025-10-10T00:00:00"}
