{"id":"https://openalex.org/W4382515824","doi":"https://doi.org/10.1093/bib/bbad246","title":"DeepAlgPro: an interpretable deep neural network model for predicting allergenic proteins","display_name":"DeepAlgPro: an interpretable deep neural network model for predicting allergenic proteins","publication_year":2023,"publication_date":"2023-06-29","ids":{"openalex":"https://openalex.org/W4382515824","doi":"https://doi.org/10.1093/bib/bbad246","pmid":"https://pubmed.ncbi.nlm.nih.gov/37385595"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad246","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbad246","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100528461","display_name":"He Chun","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151987","display_name":"Ministry of Agriculture and Rural Affairs","ror":"https://ror.org/05ckt8b96","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":null,"type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chun He","raw_affiliation_strings":["Zhejiang University State Key Laboratory of Rice Biology and Breeding & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, , Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhejiang University State Key Laboratory of Rice Biology and Breeding & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, , Hangzhou, China","institution_ids":["https://openalex.org/I4210151987","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013356232","display_name":"Xinhai Ye","orcid":"https://orcid.org/0000-0002-0203-0663"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I4210111959","display_name":"Shanghai Advanced Research Institute","ror":"https://ror.org/02br7py06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210111959"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xinhai Ye","raw_affiliation_strings":["Zhejiang University College of Computer Science and Technology, , Hangzhou, China","Zhejiang University Shanghai Institute for Advanced Study, , Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0002-0203-0663","affiliations":[{"raw_affiliation_string":"Zhejiang University College of Computer Science and Technology, , Hangzhou, China","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"Zhejiang University Shanghai Institute for Advanced Study, , Shanghai, China","institution_ids":["https://openalex.org/I4210111959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005421447","display_name":"Yi Yang","orcid":"https://orcid.org/0000-0002-0512-880X"},"institutions":[{"id":"https://openalex.org/I4210151987","display_name":"Ministry of Agriculture and Rural Affairs","ror":"https://ror.org/05ckt8b96","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":null,"type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Yang","raw_affiliation_strings":["Zhejiang University State Key Laboratory of Rice Biology and Breeding & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, , Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhejiang University State Key Laboratory of Rice Biology and Breeding & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, , Hangzhou, China","institution_ids":["https://openalex.org/I4210151987","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082943207","display_name":"Liya Hu","orcid":"https://orcid.org/0000-0002-8340-8911"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liya Hu","raw_affiliation_strings":["Zhejiang University College of Computer Science and Technology, , Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhejiang University College of Computer Science and Technology, , Hangzhou, China","institution_ids":["https://openalex.org/I168879160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030102238","display_name":"Yuxuan Si","orcid":"https://orcid.org/0000-0003-2828-5231"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuxuan Si","raw_affiliation_strings":["Zhejiang University College of Computer Science and Technology, , Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhejiang University College of Computer Science and Technology, , Hangzhou, China","institution_ids":["https://openalex.org/I168879160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010316531","display_name":"Xianxin Zhao","orcid":"https://orcid.org/0000-0002-8704-4000"},"institutions":[{"id":"https://openalex.org/I4210151987","display_name":"Ministry of Agriculture and Rural Affairs","ror":"https://ror.org/05ckt8b96","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":null,"type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianxin Zhao","raw_affiliation_strings":["Zhejiang University State Key Laboratory of Rice Biology and Breeding & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, , Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhejiang University State Key Laboratory of Rice Biology and Breeding & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, , Hangzhou, China","institution_ids":["https://openalex.org/I4210151987","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100682506","display_name":"Longfei Chen","orcid":"https://orcid.org/0000-0002-9676-4165"},"institutions":[{"id":"https://openalex.org/I4210151987","display_name":"Ministry of Agriculture and Rural Affairs","ror":"https://ror.org/05ckt8b96","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":null,"type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Longfei Chen","raw_affiliation_strings":["Zhejiang University State Key Laboratory of Rice Biology and Breeding & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, , Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhejiang University State Key Laboratory of Rice Biology and Breeding & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, , Hangzhou, China","institution_ids":["https://openalex.org/I4210151987","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042417916","display_name":"Qi Fang","orcid":"https://orcid.org/0000-0001-8226-5018"},"institutions":[{"id":"https://openalex.org/I4210151987","display_name":"Ministry of Agriculture and Rural Affairs","ror":"https://ror.org/05ckt8b96","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":null,"type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qi Fang","raw_affiliation_strings":["Zhejiang University State Key Laboratory of Rice Biology and Breeding & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, , Hangzhou, China"],"raw_orcid":"https://orcid.org/0000-0001-8226-5018","affiliations":[{"raw_affiliation_string":"Zhejiang University State Key Laboratory of Rice Biology and Breeding & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, , Hangzhou, China","institution_ids":["https://openalex.org/I4210151987","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011883201","display_name":"Ying Wei","orcid":"https://orcid.org/0000-0003-1662-4443"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Ying Wei","raw_affiliation_strings":["City University of Hong Kong Department of Computer Science, , Hong Kong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"City University of Hong Kong Department of Computer Science, , Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004882141","display_name":"Fei Wu","orcid":"https://orcid.org/0000-0003-2139-8807"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I4210111959","display_name":"Shanghai Advanced Research Institute","ror":"https://ror.org/02br7py06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210111959"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fei Wu","raw_affiliation_strings":["Zhejiang University College of Computer Science and Technology, , Hangzhou, China","Zhejiang University Shanghai Institute for Advanced Study, , Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhejiang University College of Computer Science and Technology, , Hangzhou, China","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"Zhejiang University Shanghai Institute for Advanced Study, , Shanghai, China","institution_ids":["https://openalex.org/I4210111959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040962519","display_name":"G\u014dngy\u00edn Y\u00e8","orcid":"https://orcid.org/0000-0003-4937-8867"},"institutions":[{"id":"https://openalex.org/I4210151987","display_name":"Ministry of Agriculture and Rural Affairs","ror":"https://ror.org/05ckt8b96","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":null,"type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Gongyin Ye","raw_affiliation_strings":["Zhejiang University State Key Laboratory of Rice Biology and Breeding & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, , Hangzhou, China"],"raw_orcid":"https://orcid.org/0000-0003-4937-8867","affiliations":[{"raw_affiliation_string":"Zhejiang University State Key Laboratory of Rice Biology and Breeding & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, , Hangzhou, China","institution_ids":["https://openalex.org/I4210151987","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5004882141","https://openalex.org/A5013356232","https://openalex.org/A5040962519"],"corresponding_institution_ids":["https://openalex.org/I168879160","https://openalex.org/I4210111959","https://openalex.org/I4210151987","https://openalex.org/I4391767812","https://openalex.org/I76130692"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.2499,"has_fulltext":false,"cited_by_count":24,"citation_normalized_percentile":{"value":0.88942438,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"24","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11515","display_name":"Bacillus and Francisella bacterial research","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6109817028045654},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5903627276420593},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5821424126625061},{"id":"https://openalex.org/keywords/deep-neural-networks","display_name":"Deep neural networks","score":0.4877100884914398},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48545271158218384},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37423935532569885},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22258260846138}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6109817028045654},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5903627276420593},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5821424126625061},{"id":"https://openalex.org/C2984842247","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep neural networks","level":3,"score":0.4877100884914398},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48545271158218384},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37423935532569885},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22258260846138}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006967","descriptor_name":"Hypersensitivity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006967","descriptor_name":"Hypersensitivity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006967","descriptor_name":"Hypersensitivity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad246","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbad246","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37385595","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37385595","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7400000095367432,"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16"}],"awards":[{"id":"https://openalex.org/G2816455519","display_name":null,"funder_award_id":"2021\u00a0M700125","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G5487769265","display_name":null,"funder_award_id":"32202376","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6245131227","display_name":null,"funder_award_id":"31830074","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1638763979","https://openalex.org/W1866817833","https://openalex.org/W1976801077","https://openalex.org/W1994832965","https://openalex.org/W2003805630","https://openalex.org/W2015176909","https://openalex.org/W2063345857","https://openalex.org/W2092564708","https://openalex.org/W2102786297","https://openalex.org/W2112259373","https://openalex.org/W2151932306","https://openalex.org/W2153544727","https://openalex.org/W2156565455","https://openalex.org/W2158315082","https://openalex.org/W2170747616","https://openalex.org/W2311607323","https://openalex.org/W2336509392","https://openalex.org/W2502949459","https://openalex.org/W2596889203","https://openalex.org/W2657631929","https://openalex.org/W2753708538","https://openalex.org/W2786672974","https://openalex.org/W2787142384","https://openalex.org/W2820768494","https://openalex.org/W2898389621","https://openalex.org/W2909455948","https://openalex.org/W2918598256","https://openalex.org/W2919115771","https://openalex.org/W3034527700","https://openalex.org/W3101256226","https://openalex.org/W3132153121","https://openalex.org/W3136018105","https://openalex.org/W3151529617","https://openalex.org/W3152939729","https://openalex.org/W3177828909","https://openalex.org/W3211718995","https://openalex.org/W3212853565","https://openalex.org/W4206588845","https://openalex.org/W4210342266","https://openalex.org/W4210775818","https://openalex.org/W4210960556","https://openalex.org/W4214943162","https://openalex.org/W4220685469","https://openalex.org/W4225996288","https://openalex.org/W4229443044","https://openalex.org/W4280605477","https://openalex.org/W4282913866","https://openalex.org/W4292519143","https://openalex.org/W4293215825","https://openalex.org/W4296032638","https://openalex.org/W4317603116","https://openalex.org/W6698064614","https://openalex.org/W6748816842","https://openalex.org/W6841396532"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"Allergies":[0],"have":[1],"become":[2],"an":[3],"emerging":[4],"public":[5],"health":[6],"problem":[7],"worldwide.":[8],"The":[9],"most":[10,29],"effective":[11],"way":[12],"to":[13,17,36,55,83,103,113,119,128,148],"prevent":[14],"allergies":[15],"is":[16],"find":[18],"the":[19,23,31,59,91,130,134,153],"causative":[20],"allergen":[21],"at":[22],"source":[24],"and":[25,51,111],"avoid":[26],"re-exposure.":[27],"However,":[28],"of":[30,61,133,163],"current":[32],"computational":[33],"methods":[34,69],"used":[35,125],"identify":[37,104],"allergens":[38,62],"were":[39,49,74],"based":[40,70],"on":[41,71],"homology":[42],"or":[43],"conventional":[44],"machine":[45],"learning":[46,73,78],"methods,":[47],"which":[48],"inefficient":[50],"still":[52],"had":[53],"room":[54],"be":[56],"improved":[57],"for":[58,175],"detection":[60],"with":[63],"low":[64],"homology.":[65],"In":[66,90],"addition,":[67],"few":[68],"deep":[72,77,95],"reported,":[75],"although":[76],"has":[79],"been":[80],"successfully":[81],"applied":[82],"several":[84],"tasks":[85],"in":[86,137],"protein":[87],"sequence":[88],"analysis.":[89],"present":[92],"work,":[93],"a":[94],"neural":[96],"network-based":[97],"model,":[98],"called":[99],"DeepAlgPro,":[100],"was":[101,161],"proposed":[102],"allergens.":[105,167,177],"We":[106],"showed":[107,143],"its":[108],"great":[109],"accuracy":[110],"applicability":[112],"large-scale":[114],"forecasts":[115],"by":[116],"comparing":[117],"it":[118],"other":[120],"available":[121],"tools.":[122],"Additionally,":[123],"we":[124,157],"ablation":[126],"experiments":[127],"demonstrate":[129],"critical":[131],"importance":[132],"convolutional":[135],"module":[136],"our":[138],"model.":[139],"Moreover,":[140],"further":[141],"analyses":[142],"that":[144,159],"epitope":[145],"features":[146],"contributed":[147],"model":[149],"decision-making,":[150],"thus":[151],"improving":[152],"model's":[154],"interpretability.":[155],"Finally,":[156],"found":[158],"DeepAlgPro":[160,169],"capable":[162],"detecting":[164],"potential":[165],"new":[166],"Overall,":[168],"can":[170],"serve":[171],"as":[172],"powerful":[173],"software":[174],"identifying":[176]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
