{"id":"https://openalex.org/W4382501113","doi":"https://doi.org/10.1093/bib/bbad245","title":"iEnhance: a multi-scale spatial projection encoding network for enhancing chromatin interaction data resolution","display_name":"iEnhance: a multi-scale spatial projection encoding network for enhancing chromatin interaction data resolution","publication_year":2023,"publication_date":"2023-06-28","ids":{"openalex":"https://openalex.org/W4382501113","doi":"https://doi.org/10.1093/bib/bbad245","pmid":"https://pubmed.ncbi.nlm.nih.gov/37381618"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad245","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbad245","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110247746","display_name":"Kai Li","orcid":"https://orcid.org/0009-0009-6928-4914"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I4210157677","display_name":"Hubei Academy of Agricultural Sciences","ror":"https://ror.org/04qg81z57","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210157677"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Li","raw_affiliation_strings":["Huazhong Agricultural University , College of Informatics, , Wuhan 430070 , China","Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , Wuhan 430070 , China","Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China"],"affiliations":[{"raw_affiliation_string":"Huazhong Agricultural University , College of Informatics, , Wuhan 430070 , China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , Wuhan 430070 , China","institution_ids":["https://openalex.org/I4210157677"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100405772","display_name":"Ping Zhang","orcid":"https://orcid.org/0000-0001-6831-1807"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I4210157677","display_name":"Hubei Academy of Agricultural Sciences","ror":"https://ror.org/04qg81z57","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210157677"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ping Zhang","raw_affiliation_strings":["Huazhong Agricultural University , College of Informatics, , Wuhan 430070 , China","Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , Wuhan 430070 , China","Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China"],"affiliations":[{"raw_affiliation_string":"Huazhong Agricultural University , College of Informatics, , Wuhan 430070 , China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , Wuhan 430070 , China","institution_ids":["https://openalex.org/I4210157677"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101479022","display_name":"Zilin Wang","orcid":"https://orcid.org/0000-0002-9598-3331"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I4210157677","display_name":"Hubei Academy of Agricultural Sciences","ror":"https://ror.org/04qg81z57","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210157677"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zilin Wang","raw_affiliation_strings":["Huazhong Agricultural University , College of Informatics, , Wuhan 430070 , China","Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , Wuhan 430070 , China","Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China"],"affiliations":[{"raw_affiliation_string":"Huazhong Agricultural University , College of Informatics, , Wuhan 430070 , China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , Wuhan 430070 , China","institution_ids":["https://openalex.org/I4210157677"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081156337","display_name":"Wei Shen","orcid":"https://orcid.org/0000-0002-3585-0369"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I4210157677","display_name":"Hubei Academy of Agricultural Sciences","ror":"https://ror.org/04qg81z57","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210157677"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Shen","raw_affiliation_strings":["Huazhong Agricultural University , College of Informatics, , Wuhan 430070 , China","Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , Wuhan 430070 , China","Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China"],"affiliations":[{"raw_affiliation_string":"Huazhong Agricultural University , College of Informatics, , Wuhan 430070 , China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , Wuhan 430070 , China","institution_ids":["https://openalex.org/I4210157677"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014090367","display_name":"Weicheng Sun","orcid":"https://orcid.org/0000-0002-1113-6363"},"institutions":[{"id":"https://openalex.org/I4210157677","display_name":"Hubei Academy of Agricultural Sciences","ror":"https://ror.org/04qg81z57","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210157677"]},{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weicheng Sun","raw_affiliation_strings":["Huazhong Agricultural University , College of Informatics, , Wuhan 430070 , China","Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , Wuhan 430070 , China","Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China"],"affiliations":[{"raw_affiliation_string":"Huazhong Agricultural University , College of Informatics, , Wuhan 430070 , China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , Wuhan 430070 , China","institution_ids":["https://openalex.org/I4210157677"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020459071","display_name":"Jinsheng Xu","orcid":"https://orcid.org/0000-0002-5083-6354"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I4210157677","display_name":"Hubei Academy of Agricultural Sciences","ror":"https://ror.org/04qg81z57","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210157677"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinsheng Xu","raw_affiliation_strings":["Huazhong Agricultural University , College of Informatics, , Wuhan 430070 , China","Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , Wuhan 430070 , China","Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China"],"affiliations":[{"raw_affiliation_string":"Huazhong Agricultural University , College of Informatics, , Wuhan 430070 , China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , Wuhan 430070 , China","institution_ids":["https://openalex.org/I4210157677"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085706122","display_name":"Zi Wen","orcid":"https://orcid.org/0000-0001-7600-4399"},"institutions":[{"id":"https://openalex.org/I4210157677","display_name":"Hubei Academy of Agricultural Sciences","ror":"https://ror.org/04qg81z57","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210157677"]},{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zi Wen","raw_affiliation_strings":["Huazhong Agricultural University , College of Informatics, , Wuhan 430070 , China","Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , Wuhan 430070 , China","Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China"],"affiliations":[{"raw_affiliation_string":"Huazhong Agricultural University , College of Informatics, , Wuhan 430070 , China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , Wuhan 430070 , China","institution_ids":["https://openalex.org/I4210157677"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100361282","display_name":"Li Li","orcid":"https://orcid.org/0000-0002-9594-8341"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I4210157677","display_name":"Hubei Academy of Agricultural Sciences","ror":"https://ror.org/04qg81z57","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210157677"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Li Li","raw_affiliation_strings":["Huazhong Agricultural University , College of Informatics, , Wuhan 430070 , China","Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070 , China","Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , Wuhan 430070 , China","Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China"],"affiliations":[{"raw_affiliation_string":"Huazhong Agricultural University , College of Informatics, , Wuhan 430070 , China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070 , China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , Wuhan 430070 , China","institution_ids":["https://openalex.org/I4210157677"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5100361282"],"corresponding_institution_ids":["https://openalex.org/I204823248","https://openalex.org/I4210157677"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.7962,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.7308459,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":97},"biblio":{"volume":"24","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.8125022649765015},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7040889859199524},{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.6282352209091187},{"id":"https://openalex.org/keywords/projection","display_name":"Projection (relational algebra)","score":0.5758621692657471},{"id":"https://openalex.org/keywords/decoding-methods","display_name":"Decoding methods","score":0.4744737446308136},{"id":"https://openalex.org/keywords/channel","display_name":"Channel (broadcasting)","score":0.44716912508010864},{"id":"https://openalex.org/keywords/chromosome-conformation-capture","display_name":"Chromosome conformation capture","score":0.44310900568962097},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.43002066016197205},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42887941002845764},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.41967862844467163},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3307154178619385},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2203899621963501},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14095452427864075},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13606828451156616},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.0803489089012146}],"concepts":[{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.8125022649765015},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7040889859199524},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.6282352209091187},{"id":"https://openalex.org/C57493831","wikidata":"https://www.wikidata.org/wiki/Q3134666","display_name":"Projection (relational algebra)","level":2,"score":0.5758621692657471},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.4744737446308136},{"id":"https://openalex.org/C127162648","wikidata":"https://www.wikidata.org/wiki/Q16858953","display_name":"Channel (broadcasting)","level":2,"score":0.44716912508010864},{"id":"https://openalex.org/C93946551","wikidata":"https://www.wikidata.org/wiki/Q5113914","display_name":"Chromosome conformation capture","level":5,"score":0.44310900568962097},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.43002066016197205},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42887941002845764},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.41967862844467163},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3307154178619385},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2203899621963501},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14095452427864075},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13606828451156616},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0803489089012146},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad245","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbad245","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37381618","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37381618","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.46000000834465027,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W1973062929","https://openalex.org/W2001576815","https://openalex.org/W2070021921","https://openalex.org/W2090037139","https://openalex.org/W2118258530","https://openalex.org/W2133665775","https://openalex.org/W2161212572","https://openalex.org/W2507209892","https://openalex.org/W2625231465","https://openalex.org/W2734870846","https://openalex.org/W2803256172","https://openalex.org/W2803562279","https://openalex.org/W2888425844","https://openalex.org/W2919115771","https://openalex.org/W2933433092","https://openalex.org/W2936970738","https://openalex.org/W2945135442","https://openalex.org/W2952947531","https://openalex.org/W2953462601","https://openalex.org/W2963645458","https://openalex.org/W2963920537","https://openalex.org/W2979999916","https://openalex.org/W2982661386","https://openalex.org/W2987347191","https://openalex.org/W2988126442","https://openalex.org/W3000319855","https://openalex.org/W3007609047","https://openalex.org/W3007651317","https://openalex.org/W3008783161","https://openalex.org/W3013371767","https://openalex.org/W3015754908","https://openalex.org/W3017323102","https://openalex.org/W3096831136","https://openalex.org/W3128067917","https://openalex.org/W3156421803","https://openalex.org/W3180346860","https://openalex.org/W3186099531","https://openalex.org/W3194629945","https://openalex.org/W3198476511","https://openalex.org/W3205525370","https://openalex.org/W3216012136","https://openalex.org/W4200226136","https://openalex.org/W4205134693","https://openalex.org/W4220661565","https://openalex.org/W4224250517","https://openalex.org/W4225250143","https://openalex.org/W4225279860","https://openalex.org/W4226349074","https://openalex.org/W4226408593","https://openalex.org/W4236965008","https://openalex.org/W4280512834","https://openalex.org/W4281976431","https://openalex.org/W4282921441","https://openalex.org/W4282944025","https://openalex.org/W4285006497","https://openalex.org/W4297257598","https://openalex.org/W4306943572","https://openalex.org/W4308904700","https://openalex.org/W4311100591"],"related_works":["https://openalex.org/W2368824897","https://openalex.org/W3195254751","https://openalex.org/W3116849561","https://openalex.org/W1508050556","https://openalex.org/W1910862367","https://openalex.org/W2136004413","https://openalex.org/W2379365082","https://openalex.org/W2370747590","https://openalex.org/W3180808842","https://openalex.org/W2030109976"],"abstract_inverted_index":{"Although":[0],"sequencing-based":[1],"high-throughput":[2],"chromatin":[3,13,52,101,162],"interaction":[4,38,53,102,133,163],"data":[5,31,39,66,143,164],"are":[6,95],"widely":[7],"used":[8,96],"to":[9,49,70,97,142],"uncover":[10],"genome-wide":[11],"three-dimensional":[12],"architecture,":[14],"their":[15],"sparseness":[16],"and":[17,46,57,74,91,114,131,170],"high":[18],"signal-noise-ratio":[19],"greatly":[20],"restrict":[21],"the":[22,25,64],"precision":[23],"of":[24,145,151,160],"obtained":[26],"structural":[27,129],"elements.":[28],"To":[29],"improve":[30],"quality,":[32],"we":[33],"here":[34],"present":[35],"iEnhance":[36,62,104,124,138,155],"(chromatin":[37],"resolution":[40,108],"enhancement),":[41],"a":[42],"multi-scale":[43,72],"spatial":[44],"projection":[45],"encoding":[47,90],"network,":[48],"predict":[50],"high-resolution":[51],"matrices":[54],"from":[55,167],"low-resolution":[56],"noisy":[58],"input":[59,65],"data.":[60],"Specifically,":[61],"projects":[63],"into":[67],"matrix":[68],"spaces":[69],"extract":[71],"global":[73],"local":[75],"feature":[76],"sets,":[77],"then":[78],"hierarchically":[79],"fused":[80],"these":[81],"features":[82],"by":[83],"attention":[84],"mechanism.":[85],"After":[86],"that,":[87],"dense":[88],"channel":[89,93],"residual":[92],"decoding":[94],"effectively":[98],"infer":[99],"robust":[100],"maps.":[103],"outperforms":[105],"state-of-the-art":[106],"Hi-C":[107,169],"enhancement":[109,144,159],"tools":[110],"in":[111,158],"both":[112,127],"visual":[113],"quantitative":[115],"evaluation.":[116],"Comprehensive":[117],"analysis":[118],"shows":[119],"that":[120],"unlike":[121],"other":[122,146],"tools,":[123],"can":[125,139],"recover":[126],"short-range":[128],"elements":[130],"long-range":[132],"patterns":[134],"precisely.":[135],"More":[136],"importantly,":[137],"be":[140],"transferred":[141],"tissues":[147],"or":[148],"cell":[149],"lines":[150],"unknown":[152],"resolution.":[153],"Furthermore,":[154],"performs":[156],"robustly":[157],"diverse":[161],"including":[165],"those":[166],"single-cell":[168],"Micro-C":[171],"experiments.":[172]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
