{"id":"https://openalex.org/W4382198814","doi":"https://doi.org/10.1093/bib/bbad240","title":"iAMPCN: a deep-learning approach for identifying antimicrobial peptides and their functional activities","display_name":"iAMPCN: a deep-learning approach for identifying antimicrobial peptides and their functional activities","publication_year":2023,"publication_date":"2023-06-27","ids":{"openalex":"https://openalex.org/W4382198814","doi":"https://doi.org/10.1093/bib/bbad240","pmid":"https://pubmed.ncbi.nlm.nih.gov/37369638"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad240","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad240","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bib/bbad240","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042066408","display_name":"Jing Xu","orcid":"https://orcid.org/0000-0001-8532-2241"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jing Xu","raw_affiliation_strings":["Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, VIC 3800 , Australia","Monash Data Futures Institute, Monash University , Melbourne, VIC 3800 , Australia"],"affiliations":[{"raw_affiliation_string":"Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, VIC 3800 , Australia","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Monash Data Futures Institute, Monash University , Melbourne, VIC 3800 , Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063409460","display_name":"Fuyi Li","orcid":"https://orcid.org/0000-0001-5216-3213"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I4210105123","display_name":"Peter Doherty Institute","ror":"https://ror.org/016899r71","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1320473756","https://openalex.org/I165779595","https://openalex.org/I4210105123","https://openalex.org/I4210158168"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["AU","CN"],"is_corresponding":false,"raw_author_name":"Fuyi Li","raw_affiliation_strings":["College of Information Engineering, Northwest A&F University , Shaanxi 712100 , China","Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, VIC 3800 , Australia","The Peter Doherty Institute for Infection and Immunity, The University of Melbourne , Melbourne, VIC 3800 , Australia"],"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Northwest A&F University , Shaanxi 712100 , China","institution_ids":["https://openalex.org/I89652312"]},{"raw_affiliation_string":"Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, VIC 3800 , Australia","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"The Peter Doherty Institute for Infection and Immunity, The University of Melbourne , Melbourne, VIC 3800 , Australia","institution_ids":["https://openalex.org/I4210105123","https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100369818","display_name":"Chen Li","orcid":"https://orcid.org/0000-0002-1847-754X"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Chen Li","raw_affiliation_strings":["Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, VIC 3800 , Australia","Monash Data Futures Institute, Monash University , Melbourne, VIC 3800 , Australia"],"affiliations":[{"raw_affiliation_string":"Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, VIC 3800 , Australia","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Monash Data Futures Institute, Monash University , Melbourne, VIC 3800 , Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053676942","display_name":"Xudong Guo","orcid":"https://orcid.org/0000-0002-9607-2679"},"institutions":[{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xudong Guo","raw_affiliation_strings":["College of Information Engineering, Northwest A&F University , Shaanxi 712100 , China"],"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Northwest A&F University , Shaanxi 712100 , China","institution_ids":["https://openalex.org/I89652312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030691636","display_name":"Cornelia B. Landersdorfer","orcid":"https://orcid.org/0000-0003-0928-4743"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Cornelia Landersdorfer","raw_affiliation_strings":["Monash Institute of Pharmaceutical Sciences, Monash University , Melbourne, VIC 3800 , Australia"],"affiliations":[{"raw_affiliation_string":"Monash Institute of Pharmaceutical Sciences, Monash University , Melbourne, VIC 3800 , Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091565448","display_name":"Hsin\u2010Hui Shen","orcid":"https://orcid.org/0000-0002-8541-4370"},"institutions":[{"id":"https://openalex.org/I4210129794","display_name":"Division of Materials Science and Engineering","ror":"https://ror.org/03rs0fg31","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210129794","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210154771","display_name":"CSIRO Manufacturing","ror":"https://ror.org/04sx9wp33","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210154771","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Hsin-Hui Shen","raw_affiliation_strings":["Department of Materials Science and Engineering , Faculty of Engineering, , Clayton, VIC, 3800 , Australia","Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, VIC 3800 , Australia","Monash University , Faculty of Engineering, , Clayton, VIC, 3800 , Australia","Department of Materials Science and Engineering, Faculty of Engineering, Monash University, Clayton, VIC, 3800, Australia"],"affiliations":[{"raw_affiliation_string":"Department of Materials Science and Engineering , Faculty of Engineering, , Clayton, VIC, 3800 , Australia","institution_ids":["https://openalex.org/I4210154771"]},{"raw_affiliation_string":"Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, VIC 3800 , Australia","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Monash University , Faculty of Engineering, , Clayton, VIC, 3800 , Australia","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Department of Materials Science and Engineering, Faculty of Engineering, Monash University, Clayton, VIC, 3800, Australia","institution_ids":["https://openalex.org/I56590836","https://openalex.org/I4210129794"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087023094","display_name":"Anton Y. Peleg","orcid":"https://orcid.org/0000-0002-2296-2126"},"institutions":[{"id":"https://openalex.org/I4210163178","display_name":"Alfred Health","ror":"https://ror.org/04scfb908","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210163178"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Anton Y Peleg","raw_affiliation_strings":["Department of Infectious Diseases, Alfred Hospital, Alfred Health , Melbourne, Victoria , Australia","Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, VIC 3800 , Australia"],"affiliations":[{"raw_affiliation_string":"Department of Infectious Diseases, Alfred Hospital, Alfred Health , Melbourne, Victoria , Australia","institution_ids":["https://openalex.org/I4210163178"]},{"raw_affiliation_string":"Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, VIC 3800 , Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100402427","display_name":"Jian Li","orcid":"https://orcid.org/0000-0001-7953-8230"},"institutions":[{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jian Li","raw_affiliation_strings":["Monash Biomedicine Discovery Institute and Department of Microbiology, Monash University , Melbourne, VIC 3800 , Australia"],"affiliations":[{"raw_affiliation_string":"Monash Biomedicine Discovery Institute and Department of Microbiology, Monash University , Melbourne, VIC 3800 , Australia","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090788230","display_name":"Seiya Imoto","orcid":"https://orcid.org/0000-0002-2989-308X"},"institutions":[{"id":"https://openalex.org/I4210151462","display_name":"New York Genome Center","ror":"https://ror.org/05wf2ga96","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210151462"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP","US"],"is_corresponding":false,"raw_author_name":"Seiya Imoto","raw_affiliation_strings":["Collaborative Research Institute for Innovative Microbiology, The University of Tokyo , Bunkyo-ku, Tokyo , Japan","Division of Health Medical Intelligence , Human Genome Center, , Tokyo , Japan","Institute of Medical Science, The University of Tokyo, Minato-ku , Human Genome Center, , Tokyo , Japan","Division of Health Medical Intelligence, Human Genome Center, Institute of Medical Science, The University of Tokyo, Minato-ku, Tokyo, Japan","Collaborative Research Institute for Innovative Microbiology, The University of Tokyo, Bunkyo-ku, Tokyo, Japan"],"affiliations":[{"raw_affiliation_string":"Collaborative Research Institute for Innovative Microbiology, The University of Tokyo , Bunkyo-ku, Tokyo , Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Division of Health Medical Intelligence , Human Genome Center, , Tokyo , Japan","institution_ids":["https://openalex.org/I4210151462"]},{"raw_affiliation_string":"Institute of Medical Science, The University of Tokyo, Minato-ku , Human Genome Center, , Tokyo , Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Division of Health Medical Intelligence, Human Genome Center, Institute of Medical Science, The University of Tokyo, Minato-ku, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Collaborative Research Institute for Innovative Microbiology, The University of Tokyo, Bunkyo-ku, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100695406","display_name":"Jianhua Yao","orcid":"https://orcid.org/0000-0001-9157-9596"},"institutions":[{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianhua Yao","raw_affiliation_strings":["Tencent AI Lab , Tencent, Shenzhen , China"],"affiliations":[{"raw_affiliation_string":"Tencent AI Lab , Tencent, Shenzhen , China","institution_ids":["https://openalex.org/I2250653659"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016330265","display_name":"Tatsuya Akutsu","orcid":null},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4210088032","display_name":"Kyoto Bunkyo University","ror":"https://ror.org/0037an472","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210088032"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["IN","JP"],"is_corresponding":false,"raw_author_name":"Tatsuya Akutsu","raw_affiliation_strings":["Bioinformatics Center , Institute for Chemical Research, , Uji 611-0011 , Japan","Kyoto University , Institute for Chemical Research, , Uji 611-0011 , Japan","Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Center , Institute for Chemical Research, , Uji 611-0011 , Japan","institution_ids":["https://openalex.org/I4210148697"]},{"raw_affiliation_string":"Kyoto University , Institute for Chemical Research, , Uji 611-0011 , Japan","institution_ids":["https://openalex.org/I4210088032","https://openalex.org/I22299242"]},{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012709797","display_name":"Jiangning Song","orcid":"https://orcid.org/0000-0001-8031-9086"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4210088032","display_name":"Kyoto Bunkyo University","ror":"https://ror.org/0037an472","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210088032"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","IN","JP"],"is_corresponding":true,"raw_author_name":"Jiangning Song","raw_affiliation_strings":["Bioinformatics Center , Institute for Chemical Research, , Uji 611-0011 , Japan","Kyoto University , Institute for Chemical Research, , Uji 611-0011 , Japan","Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, VIC 3800 , Australia","Monash Data Futures Institute, Monash University , Melbourne, VIC 3800 , Australia","Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Center , Institute for Chemical Research, , Uji 611-0011 , Japan","institution_ids":["https://openalex.org/I4210148697"]},{"raw_affiliation_string":"Kyoto University , Institute for Chemical Research, , Uji 611-0011 , Japan","institution_ids":["https://openalex.org/I4210088032","https://openalex.org/I22299242"]},{"raw_affiliation_string":"Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, VIC 3800 , Australia","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Monash Data Futures Institute, Monash University , Melbourne, VIC 3800 , Australia","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5012709797"],"corresponding_institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4210088032","https://openalex.org/I4210148697","https://openalex.org/I4399598384","https://openalex.org/I56590836"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":16.6663,"has_fulltext":true,"cited_by_count":90,"citation_normalized_percentile":{"value":0.99591222,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"24","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antimicrobial-peptides","display_name":"Antimicrobial peptides","score":0.8773784637451172},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6676445007324219},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6601607799530029},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.6209448575973511},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5684019923210144},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5140401124954224},{"id":"https://openalex.org/keywords/redundancy","display_name":"Redundancy (engineering)","score":0.4202394187450409},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41941362619400024},{"id":"https://openalex.org/keywords/antimicrobial","display_name":"Antimicrobial","score":0.270982027053833},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19497734308242798}],"concepts":[{"id":"https://openalex.org/C540938839","wikidata":"https://www.wikidata.org/wiki/Q1201508","display_name":"Antimicrobial peptides","level":3,"score":0.8773784637451172},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6676445007324219},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6601607799530029},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.6209448575973511},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5684019923210144},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5140401124954224},{"id":"https://openalex.org/C152124472","wikidata":"https://www.wikidata.org/wiki/Q1204361","display_name":"Redundancy (engineering)","level":2,"score":0.4202394187450409},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41941362619400024},{"id":"https://openalex.org/C4937899","wikidata":"https://www.wikidata.org/wiki/Q68541106","display_name":"Antimicrobial","level":2,"score":0.270982027053833},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19497734308242798},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbad240","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad240","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37369638","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37369638","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10359087","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10359087","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10359087/pdf/bbad240.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:digital.library.adelaide.edu.au:2440/139649","is_oa":false,"landing_page_url":"https://hdl.handle.net/2440/139649","pdf_url":null,"source":{"id":"https://openalex.org/S4306401835","display_name":"Adelaide Research & Scholarship (AR&S) (University of Adelaide)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5681781","host_organization_name":"The University of Adelaide","host_organization_lineage":["https://openalex.org/I5681781"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://dx.doi.org/10.1093/bib/bbad240","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbad240","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad240","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1127919792","display_name":null,"funder_award_id":"DP120104460","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G241248248","display_name":null,"funder_award_id":"LP110200333","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G5000224395","display_name":null,"funder_award_id":"K23-2074","funder_id":"https://openalex.org/F4320322832","funder_display_name":"University of Tokyo"},{"id":"https://openalex.org/G5076668117","display_name":null,"funder_award_id":"R01 AI111965","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320322832","display_name":"University of Tokyo","ror":"https://ror.org/057zh3y96"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":128,"referenced_works":["https://openalex.org/W1832693441","https://openalex.org/W1964937304","https://openalex.org/W1988385885","https://openalex.org/W1997787796","https://openalex.org/W1998064689","https://openalex.org/W1999954155","https://openalex.org/W2008183828","https://openalex.org/W2014731953","https://openalex.org/W2015490529","https://openalex.org/W2035167810","https://openalex.org/W2035755292","https://openalex.org/W2038681300","https://openalex.org/W2040895929","https://openalex.org/W2043338013","https://openalex.org/W2046914949","https://openalex.org/W2055752079","https://openalex.org/W2056132907","https://openalex.org/W2064675550","https://openalex.org/W2067402644","https://openalex.org/W2076860935","https://openalex.org/W2080614447","https://openalex.org/W2081183202","https://openalex.org/W2086798171","https://openalex.org/W2092643722","https://openalex.org/W2095947376","https://openalex.org/W2097099115","https://openalex.org/W2097606916","https://openalex.org/W2097834518","https://openalex.org/W2099153308","https://openalex.org/W2104933073","https://openalex.org/W2109553965","https://openalex.org/W2119862467","https://openalex.org/W2123231250","https://openalex.org/W2129115651","https://openalex.org/W2131275757","https://openalex.org/W2134427544","https://openalex.org/W2140501815","https://openalex.org/W2143612262","https://openalex.org/W2148143831","https://openalex.org/W2153187042","https://openalex.org/W2153635508","https://openalex.org/W2156125289","https://openalex.org/W2170747616","https://openalex.org/W2175270296","https://openalex.org/W2187089797","https://openalex.org/W2222575139","https://openalex.org/W2295598076","https://openalex.org/W2322844633","https://openalex.org/W2339719866","https://openalex.org/W2414600499","https://openalex.org/W2420788139","https://openalex.org/W2511835277","https://openalex.org/W2588463038","https://openalex.org/W2739999456","https://openalex.org/W2747758005","https://openalex.org/W2765092674","https://openalex.org/W2789857505","https://openalex.org/W2791166180","https://openalex.org/W2791848964","https://openalex.org/W2792378492","https://openalex.org/W2806146459","https://openalex.org/W2896457183","https://openalex.org/W2899153547","https://openalex.org/W2917874934","https://openalex.org/W2937145808","https://openalex.org/W2943935116","https://openalex.org/W2945375732","https://openalex.org/W2953561684","https://openalex.org/W2958531350","https://openalex.org/W2965128681","https://openalex.org/W2984592028","https://openalex.org/W2987660980","https://openalex.org/W2998197489","https://openalex.org/W3007215678","https://openalex.org/W3007285729","https://openalex.org/W3009548091","https://openalex.org/W3013675885","https://openalex.org/W3025501158","https://openalex.org/W3033690697","https://openalex.org/W3039894784","https://openalex.org/W3040996852","https://openalex.org/W3048086963","https://openalex.org/W3080137602","https://openalex.org/W3081999257","https://openalex.org/W3097405028","https://openalex.org/W3112842176","https://openalex.org/W3126317983","https://openalex.org/W3128972055","https://openalex.org/W3136918052","https://openalex.org/W3139686515","https://openalex.org/W3146944767","https://openalex.org/W3150808126","https://openalex.org/W3154318479","https://openalex.org/W3164453494","https://openalex.org/W3164698295","https://openalex.org/W3164941572","https://openalex.org/W3178663131","https://openalex.org/W3186424845","https://openalex.org/W3188372451","https://openalex.org/W3198303770","https://openalex.org/W3205595869","https://openalex.org/W3212983993","https://openalex.org/W3216979156","https://openalex.org/W3217347090","https://openalex.org/W3217372366","https://openalex.org/W4206037251","https://openalex.org/W4211054902","https://openalex.org/W4211246989","https://openalex.org/W4213345021","https://openalex.org/W4213430678","https://openalex.org/W4214943162","https://openalex.org/W4225525978","https://openalex.org/W4282976570","https://openalex.org/W4292678539","https://openalex.org/W4298325971","https://openalex.org/W4301409532","https://openalex.org/W4304114151","https://openalex.org/W4309506674","https://openalex.org/W4327550249","https://openalex.org/W4404458588","https://openalex.org/W6667333778","https://openalex.org/W6679889579","https://openalex.org/W6742348326","https://openalex.org/W6755207826","https://openalex.org/W6761423694","https://openalex.org/W6775101564","https://openalex.org/W6800693912","https://openalex.org/W6814377679"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2000169967","https://openalex.org/W2112883198"],"abstract_inverted_index":{"Antimicrobial":[0],"peptides":[1,5],"(AMPs)":[2],"are":[3,77],"short":[4],"that":[6,90,109,161,190,253],"play":[7],"crucial":[8],"roles":[9],"in":[10,117],"diverse":[11],"biological":[12],"processes":[13],"and":[14,29,87,113,124,135,152,170,201,216,234],"have":[15,37,62,240],"various":[16],"functional":[17,83,115,156,173,203,237,268],"activities":[18,84,93,116,174,215,269],"against":[19],"target":[20],"organisms.":[21],"Due":[22],"to":[23,34,40,43,65,149],"the":[24,38,47,82,120,125,165,185,208,218,229,242],"abuse":[25],"of":[26,49,59,75,80,85,99,119,144,168,179,195,212,222,232,245],"chemical":[27],"antibiotics":[28],"microbial":[30],"pathogens'":[31],"increasing":[32],"resistance":[33],"antibiotics,":[35],"AMPs":[36,50,67,112,145,151,169,200,233,265],"potential":[39,264],"be":[41,256],"alternatives":[42],"antibiotics.":[44],"As":[45],"such,":[46],"identification":[48,231],"has":[51],"become":[52],"a":[53,97,137,193,259],"widely":[54],"discussed":[55],"topic.":[56],"A":[57],"variety":[58],"computational":[60],"approaches":[61,197],"been":[63],"developed":[64],"identify":[66,111,150],"based":[68,146,175],"on":[69,96,147,176,184,220],"machine":[70],"learning":[71],"algorithms.":[72],"However,":[73],"most":[74],"them":[76],"not":[78],"capable":[79],"predicting":[81,199],"AMPs,":[86],"those":[88],"predictors":[89,108],"can":[91,110,255],"specify":[92],"only":[94],"focus":[95],"few":[98],"them.":[100],"In":[101],"this":[102],"study,":[103],"we":[104,130,206,239],"first":[105],"surveyed":[106],"10":[107],"their":[114,153,171,202,235],"terms":[118],"features":[121],"they":[122,127],"employed":[123],"algorithms":[126],"utilized.":[128],"Then,":[129],"constructed":[131],"comprehensive":[132],"AMP":[133,214],"datasets":[134,188,221],"proposed":[136],"new":[138],"deep":[139],"learning-based":[140],"framework,":[141],"iAMPCN":[142,162,191,246,254],"(identification":[143],"CNNs),":[148],"related":[154],"22":[155],"activities.":[157,204],"Our":[158],"experiments":[159,183],"demonstrate":[160],"significantly":[163],"improved":[164],"prediction":[166],"performance":[167],"corresponding":[172,236],"four":[177],"types":[178],"sequence":[180,224],"features.":[181],"Benchmarking":[182],"independent":[186],"test":[187],"showed":[189],"outperformed":[192],"number":[194],"state-of-the-art":[196],"for":[198,262,270],"Furthermore,":[205],"analyzed":[207],"amino":[209],"acid":[210],"preferences":[211],"different":[213],"evaluated":[217],"model":[219],"varying":[223],"redundancy":[225],"thresholds.":[226],"To":[227],"facilitate":[228],"community-wide":[230],"types,":[238],"made":[241],"source":[243],"codes":[244],"publicly":[247],"available":[248],"at":[249],"https://github.com/joy50706/iAMPCN/tree/master.":[250],"We":[251],"anticipate":[252],"explored":[257],"as":[258],"valuable":[260],"tool":[261],"identifying":[263],"with":[266],"specific":[267],"further":[271],"experimental":[272],"validation.":[273]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":49},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":8}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}