{"id":"https://openalex.org/W4384920712","doi":"https://doi.org/10.1093/bib/bbad236","title":"Explainable AI for Bioinformatics: Methods, Tools and Applications","display_name":"Explainable AI for Bioinformatics: Methods, Tools and Applications","publication_year":2023,"publication_date":"2023-07-20","ids":{"openalex":"https://openalex.org/W4384920712","doi":"https://doi.org/10.1093/bib/bbad236","pmid":"https://pubmed.ncbi.nlm.nih.gov/37478371"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad236","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad236","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad236/50926106/bbad236.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad236/50926106/bbad236.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114549797","display_name":"Md. Rezaul Karim","orcid":"https://orcid.org/0000-0001-6804-9183"},"institutions":[{"id":"https://openalex.org/I4210110507","display_name":"Fraunhofer Institute for Applied Information Technology","ror":"https://ror.org/01ak24c12","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210110507","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Md Rezaul Karim","raw_affiliation_strings":["Computer Science 5 - Information Systems and Databases , RWTH Aachen University , Germany","Department of Data Science and Artificial Intelligence , Fraunhofer FIT , Germany"],"raw_orcid":"https://orcid.org/0000-0001-6804-9183","affiliations":[{"raw_affiliation_string":"Computer Science 5 - Information Systems and Databases , RWTH Aachen University , Germany","institution_ids":["https://openalex.org/I887968799"]},{"raw_affiliation_string":"Department of Data Science and Artificial Intelligence , Fraunhofer FIT , Germany","institution_ids":["https://openalex.org/I4210110507"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009874495","display_name":"Tanhim Islam","orcid":"https://orcid.org/0000-0003-3182-1138"},"institutions":[{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tanhim Islam","raw_affiliation_strings":["Computer Science 9 - Process and Data Science , RWTH Aachen University , Germany"],"raw_orcid":"https://orcid.org/0000-0003-3182-1138","affiliations":[{"raw_affiliation_string":"Computer Science 9 - Process and Data Science , RWTH Aachen University , Germany","institution_ids":["https://openalex.org/I887968799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049561647","display_name":"Md Shajalal","orcid":"https://orcid.org/0000-0002-9011-708X"},"institutions":[{"id":"https://openalex.org/I206895457","display_name":"University of Siegen","ror":"https://ror.org/02azyry73","country_code":"DE","type":"education","lineage":["https://openalex.org/I206895457"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Md Shajalal","raw_affiliation_strings":["University of Siegen , Germany"],"raw_orcid":"https://orcid.org/0000-0002-9011-708X","affiliations":[{"raw_affiliation_string":"University of Siegen , Germany","institution_ids":["https://openalex.org/I206895457"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067635650","display_name":"Oya Beyan","orcid":"https://orcid.org/0000-0001-7611-3501"},"institutions":[{"id":"https://openalex.org/I180923762","display_name":"University of Cologne","ror":"https://ror.org/00rcxh774","country_code":"DE","type":"education","lineage":["https://openalex.org/I180923762"]},{"id":"https://openalex.org/I4210153755","display_name":"University Hospital Cologne","ror":"https://ror.org/05mxhda18","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210153755"]},{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Oya Beyan","raw_affiliation_strings":["Computer Science 5 - Information Systems and Databases , RWTH Aachen University , Germany","University of Cologne, Faculty of Medicine and University Hospital Cologne, Institute for Medical Informatics , Germany"],"raw_orcid":"https://orcid.org/0000-0001-7611-3501","affiliations":[{"raw_affiliation_string":"Computer Science 5 - Information Systems and Databases , RWTH Aachen University , Germany","institution_ids":["https://openalex.org/I887968799"]},{"raw_affiliation_string":"University of Cologne, Faculty of Medicine and University Hospital Cologne, Institute for Medical Informatics , Germany","institution_ids":["https://openalex.org/I4210153755","https://openalex.org/I180923762"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007714809","display_name":"Christoph Lange","orcid":"https://orcid.org/0000-0001-9879-3827"},"institutions":[{"id":"https://openalex.org/I4210110507","display_name":"Fraunhofer Institute for Applied Information Technology","ror":"https://ror.org/01ak24c12","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210110507","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christoph Lange","raw_affiliation_strings":["Computer Science 5 - Information Systems and Databases , RWTH Aachen University , Germany","Department of Data Science and Artificial Intelligence , Fraunhofer FIT , Germany"],"raw_orcid":"https://orcid.org/0000-0001-9879-3827","affiliations":[{"raw_affiliation_string":"Computer Science 5 - Information Systems and Databases , RWTH Aachen University , Germany","institution_ids":["https://openalex.org/I887968799"]},{"raw_affiliation_string":"Department of Data Science and Artificial Intelligence , Fraunhofer FIT , Germany","institution_ids":["https://openalex.org/I4210110507"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041317183","display_name":"Michael Cochez","orcid":"https://orcid.org/0000-0001-5726-4638"},"institutions":[{"id":"https://openalex.org/I1318003438","display_name":"RELX Group (Netherlands)","ror":"https://ror.org/02scfj030","country_code":"NL","type":"company","lineage":["https://openalex.org/I1318003438","https://openalex.org/I4210160603"]},{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Michael Cochez","raw_affiliation_strings":["Department of Computer Science, Vrije Universiteit Amsterdam , the Netherlands","Elsevier Discovery Lab , Amsterdam, the Netherlands"],"raw_orcid":"https://orcid.org/0000-0001-5726-4638","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Vrije Universiteit Amsterdam , the Netherlands","institution_ids":["https://openalex.org/I865915315"]},{"raw_affiliation_string":"Elsevier Discovery Lab , Amsterdam, the Netherlands","institution_ids":["https://openalex.org/I1318003438"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006224704","display_name":"Dietrich Rebholz\u2010Schuhmann","orcid":"https://orcid.org/0000-0002-1018-0370"},"institutions":[{"id":"https://openalex.org/I180923762","display_name":"University of Cologne","ror":"https://ror.org/00rcxh774","country_code":"DE","type":"education","lineage":["https://openalex.org/I180923762"]},{"id":"https://openalex.org/I4210112663","display_name":"ZB MED - Information Centre for Life Sciences","ror":"https://ror.org/0259fwx54","country_code":"DE","type":"archive","lineage":["https://openalex.org/I4210112663"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dietrich Rebholz-Schuhmann","raw_affiliation_strings":["Faculty of Medicine, University of Cologne , Germany","ZBMED - Information Center for Life Sciences , Cologne , Germany"],"raw_orcid":"https://orcid.org/0000-0002-1018-0370","affiliations":[{"raw_affiliation_string":"Faculty of Medicine, University of Cologne , Germany","institution_ids":["https://openalex.org/I180923762"]},{"raw_affiliation_string":"ZBMED - Information Center for Life Sciences , Cologne , Germany","institution_ids":["https://openalex.org/I4210112663"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071104283","display_name":"Stefan Decker","orcid":"https://orcid.org/0000-0001-6324-7164"},"institutions":[{"id":"https://openalex.org/I4210110507","display_name":"Fraunhofer Institute for Applied Information Technology","ror":"https://ror.org/01ak24c12","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210110507","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Decker","raw_affiliation_strings":["Computer Science 5 - Information Systems and Databases , RWTH Aachen University , Germany","Department of Data Science and Artificial Intelligence , Fraunhofer FIT , Germany"],"raw_orcid":"https://orcid.org/0000-0001-6324-7164","affiliations":[{"raw_affiliation_string":"Computer Science 5 - Information Systems and Databases , RWTH Aachen University , Germany","institution_ids":["https://openalex.org/I887968799"]},{"raw_affiliation_string":"Department of Data Science and Artificial Intelligence , Fraunhofer FIT , Germany","institution_ids":["https://openalex.org/I4210110507"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":23.6496,"has_fulltext":true,"cited_by_count":179,"citation_normalized_percentile":{"value":0.99702213,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"24","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12026","display_name":"Explainable Artificial Intelligence (XAI)","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12026","display_name":"Explainable Artificial Intelligence (XAI)","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9538999795913696,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transparency","display_name":"Transparency (behavior)","score":0.8308789134025574},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7969145774841309},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6636131405830383},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5694888830184937},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5641707181930542},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5341018438339233},{"id":"https://openalex.org/keywords/personalization","display_name":"Personalization","score":0.5311041474342346},{"id":"https://openalex.org/keywords/black-box","display_name":"Black box","score":0.5013089179992676},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.47448161244392395},{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.4158889055252075},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.09380364418029785}],"concepts":[{"id":"https://openalex.org/C2780233690","wikidata":"https://www.wikidata.org/wiki/Q535347","display_name":"Transparency (behavior)","level":2,"score":0.8308789134025574},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7969145774841309},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6636131405830383},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5694888830184937},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5641707181930542},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5341018438339233},{"id":"https://openalex.org/C183003079","wikidata":"https://www.wikidata.org/wiki/Q1000371","display_name":"Personalization","level":2,"score":0.5311041474342346},{"id":"https://openalex.org/C94966114","wikidata":"https://www.wikidata.org/wiki/Q29256","display_name":"Black box","level":2,"score":0.5013089179992676},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.47448161244392395},{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.4158889055252075},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.09380364418029785},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbad236","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad236","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad236/50926106/bbad236.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37478371","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37478371","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:research.vu.nl:openaire/b8ff77eb-a8f6-4768-bc40-3699e442d34d","is_oa":true,"landing_page_url":"https://research.vu.nl/en/publications/b8ff77eb-a8f6-4768-bc40-3699e442d34d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401107","display_name":"VU Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Karim, M R, Islam, T, Shajalal, M, Beyan, O, Lange, C, Cochez, M, Rebholz-Schuhmann, D & Decker, S 2023, 'Explainable AI for Bioinformatics : Methods, Tools and Applications', Briefings in bioinformatics, vol. 24, no. 5, bbad236, pp. 1-22. https://doi.org/10.1093/bib/bbad236","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/462806","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/462806","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:research.vu.nl:publications/b8ff77eb-a8f6-4768-bc40-3699e442d34d","is_oa":true,"landing_page_url":"https://hdl.handle.net/1871.1/b8ff77eb-a8f6-4768-bc40-3699e442d34d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401107","display_name":"VU Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Karim, M R, Islam, T, Shajalal, M, Beyan, O, Lange, C, Cochez, M, Rebholz-Schuhmann, D & Decker, S 2023, 'Explainable AI for Bioinformatics : Methods, Tools and Applications', Briefings in bioinformatics, vol. 24, no. 5, bbad236, pp. 1-22. https://doi.org/10.1093/bib/bbad236","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbad236","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad236","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad236/50926106/bbad236.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions","score":0.6800000071525574}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4384920712.pdf","grobid_xml":"https://content.openalex.org/works/W4384920712.grobid-xml"},"referenced_works_count":146,"referenced_works":["https://openalex.org/W1583837637","https://openalex.org/W1787224781","https://openalex.org/W1971609990","https://openalex.org/W1996796871","https://openalex.org/W2111547563","https://openalex.org/W2118022153","https://openalex.org/W2130485404","https://openalex.org/W2148001258","https://openalex.org/W2195388612","https://openalex.org/W2282821441","https://openalex.org/W2318875203","https://openalex.org/W2498041801","https://openalex.org/W2590082389","https://openalex.org/W2605409611","https://openalex.org/W2726539084","https://openalex.org/W2747329762","https://openalex.org/W2753845591","https://openalex.org/W2778172371","https://openalex.org/W2788403449","https://openalex.org/W2883424428","https://openalex.org/W2891488835","https://openalex.org/W2911489562","https://openalex.org/W2913126410","https://openalex.org/W2921802966","https://openalex.org/W2927351257","https://openalex.org/W2950275995","https://openalex.org/W2953532875","https://openalex.org/W2956993163","https://openalex.org/W2958089299","https://openalex.org/W2959325723","https://openalex.org/W2959587146","https://openalex.org/W2962772482","https://openalex.org/W2962862931","https://openalex.org/W2963095307","https://openalex.org/W2963125461","https://openalex.org/W2963222567","https://openalex.org/W2963399068","https://openalex.org/W2967743080","https://openalex.org/W2970030610","https://openalex.org/W2970155250","https://openalex.org/W2970771982","https://openalex.org/W2972317931","https://openalex.org/W2978223337","https://openalex.org/W2981869278","https://openalex.org/W2995739402","https://openalex.org/W3000157488","https://openalex.org/W3000965188","https://openalex.org/W3003753408","https://openalex.org/W3003794402","https://openalex.org/W3005778327","https://openalex.org/W3006326483","https://openalex.org/W3008128620","https://openalex.org/W3008695158","https://openalex.org/W3010336026","https://openalex.org/W3012430016","https://openalex.org/W3013149459","https://openalex.org/W3026235644","https://openalex.org/W3035503910","https://openalex.org/W3036453007","https://openalex.org/W3038003025","https://openalex.org/W3102363003","https://openalex.org/W3107803811","https://openalex.org/W3111875263","https://openalex.org/W3120835175","https://openalex.org/W3124792046","https://openalex.org/W3128679580","https://openalex.org/W3134091181","https://openalex.org/W3135252983","https://openalex.org/W3138819813","https://openalex.org/W3146248196","https://openalex.org/W3157337244","https://openalex.org/W3174086521","https://openalex.org/W3181414820","https://openalex.org/W3206507930","https://openalex.org/W3209024753","https://openalex.org/W3209952520","https://openalex.org/W3210179814","https://openalex.org/W4205631037","https://openalex.org/W4212946592","https://openalex.org/W4226328072","https://openalex.org/W4233635718","https://openalex.org/W4234552385","https://openalex.org/W4283829755","https://openalex.org/W4287811112","https://openalex.org/W4288577486","https://openalex.org/W4293583991","https://openalex.org/W4297183943","https://openalex.org/W4300235091","https://openalex.org/W4301409532","https://openalex.org/W4306177937","https://openalex.org/W4309730097","https://openalex.org/W4321485347","https://openalex.org/W4324119593","https://openalex.org/W4365800096","https://openalex.org/W4385245566","https://openalex.org/W4388405269","https://openalex.org/W4402843978","https://openalex.org/W6639204139","https://openalex.org/W6677995690","https://openalex.org/W6679488046","https://openalex.org/W6682762504","https://openalex.org/W6685133223","https://openalex.org/W6697443983","https://openalex.org/W6733905848","https://openalex.org/W6734194636","https://openalex.org/W6739361533","https://openalex.org/W6739792241","https://openalex.org/W6739901393","https://openalex.org/W6739964466","https://openalex.org/W6744110554","https://openalex.org/W6745168123","https://openalex.org/W6745730051","https://openalex.org/W6746876212","https://openalex.org/W6748218292","https://openalex.org/W6750032487","https://openalex.org/W6750391026","https://openalex.org/W6750669048","https://openalex.org/W6751758391","https://openalex.org/W6751923991","https://openalex.org/W6751959524","https://openalex.org/W6752170072","https://openalex.org/W6754826303","https://openalex.org/W6755207826","https://openalex.org/W6758293299","https://openalex.org/W6758294508","https://openalex.org/W6760413865","https://openalex.org/W6763021810","https://openalex.org/W6764462969","https://openalex.org/W6765638835","https://openalex.org/W6766263406","https://openalex.org/W6766721971","https://openalex.org/W6767220000","https://openalex.org/W6767288045","https://openalex.org/W6773505101","https://openalex.org/W6776595772","https://openalex.org/W6779540071","https://openalex.org/W6785876156","https://openalex.org/W6786294978","https://openalex.org/W6788257421","https://openalex.org/W6791156744","https://openalex.org/W6792925771","https://openalex.org/W6798913353","https://openalex.org/W6810001955","https://openalex.org/W6842289779","https://openalex.org/W6843172354","https://openalex.org/W6846017273"],"related_works":["https://openalex.org/W2766314289","https://openalex.org/W2797441709","https://openalex.org/W2943982549","https://openalex.org/W2886918272","https://openalex.org/W4387589990","https://openalex.org/W4297660007","https://openalex.org/W2346578521","https://openalex.org/W2910028250","https://openalex.org/W4241566321","https://openalex.org/W3101055019"],"abstract_inverted_index":{"Artificial":[0],"intelligence":[1],"(AI)":[2],"systems":[3,88,139],"utilizing":[4],"deep":[5],"neural":[6],"networks":[7],"and":[8,24,37,61,75,132,151,169,191,203,217,222,224,239,253,264,274,286],"machine":[9],"learning":[10],"(ML)":[11],"algorithms":[12],"are":[13,32,77,167],"widely":[14],"used":[15],"for":[16,58,86,280],"solving":[17,290],"critical":[18],"problems":[19,187],"in":[20,136,206,249],"bioinformatics,":[21],"biomedical":[22],"informatics":[23],"precision":[25],"medicine.":[26],"However,":[27,158],"complex":[28],"ML":[29,143,165,220,234],"models":[30,131,144],"that":[31,89,154],"often":[33],"perceived":[34],"as":[35,63,65,72,103,175,276],"opaque":[36],"black-box":[38,130],"methods":[39,166,221,235,260],"make":[40,140,149],"it":[41],"difficult":[42],"to":[43,125,133,185,241,283],"understand":[44],"the":[45,127,159,162,199,207],"reasoning":[46,179],"behind":[47],"their":[48,156,226],"decisions.":[49,141],"This":[50],"lack":[51],"of":[52,129,161,201,209,215],"transparency":[53,135,205,263,288],"can":[54,90,145,236,261],"be":[55,237],"a":[56,92,277],"challenge":[57],"both":[59],"end-users":[60],"decision-makers,":[62],"well":[64],"AI":[66,87,122,138],"developers.":[67],"In":[68,194],"sensitive":[69,119],"areas":[70],"such":[71,174],"healthcare,":[73],"explainability":[74,202,285],"accountability":[76],"not":[78,107],"only":[79],"desirable":[80],"properties":[81],"but":[82],"also":[83],"legally":[84],"required":[85],"have":[91,170],"significant":[93],"impact":[94],"on":[95,118],"human":[96],"lives.":[97],"Fairness":[98],"is":[99],"another":[100],"growing":[101],"concern,":[102],"algorithmic":[104,204],"decisions":[105],"should":[106],"show":[108],"bias":[109],"or":[110,115,180],"discrimination":[111],"towards":[112],"certain":[113],"groups":[114],"individuals":[116],"based":[117],"attributes.":[120],"Explainable":[121],"(XAI)":[123],"aims":[124,269],"overcome":[126],"opaqueness":[128],"provide":[134,212],"how":[137,147,231,258],"Interpretable":[142],"explain":[146],"they":[148],"predictions":[150],"identify":[152],"factors":[153],"influence":[155],"outcomes.":[157],"majority":[160],"state-of-the-art":[163],"interpretable":[164,219,233],"domain-agnostic":[168],"evolved":[171],"from":[172],"fields":[173],"computer":[176],"vision,":[177],"automated":[178],"statistics,":[181],"making":[182],"direct":[183],"application":[184],"bioinformatics":[186,242,291],"challenging":[188],"without":[189],"customization":[190],"domain":[192],"adaptation.":[193],"this":[195],"paper,":[196],"we":[197,256],"discuss":[198,230],"importance":[200],"context":[208],"bioinformatics.":[210],"We":[211,229],"an":[213],"overview":[214],"model-specific":[216],"model-agnostic":[218],"tools":[223],"outline":[225],"potential":[227],"limitations.":[228],"existing":[232],"customized":[238],"fit":[240],"research":[243],"problems.":[244,292],"Further,":[245],"through":[246],"case":[247],"studies":[248],"bioimaging,":[250],"cancer":[251],"genomics":[252],"text":[254],"mining,":[255],"demonstrate":[257],"XAI":[259],"improve":[262],"decision":[265,287],"fairness.":[266],"Our":[267],"review":[268],"at":[270],"providing":[271],"valuable":[272],"insights":[273],"serving":[275],"starting":[278],"point":[279],"researchers":[281],"wanting":[282],"enhance":[284],"while":[289],"GitHub:":[293],"https://github.com/rezacsedu/XAI-for-bioinformatics.":[294]},"counts_by_year":[{"year":2026,"cited_by_count":52},{"year":2025,"cited_by_count":71},{"year":2024,"cited_by_count":47},{"year":2023,"cited_by_count":9}],"updated_date":"2026-07-18T07:39:51.176621","created_date":"2025-10-10T00:00:00"}