{"id":"https://openalex.org/W4381046896","doi":"https://doi.org/10.1093/bib/bbad227","title":"MPCLCDA: predicting circRNA\u2013disease associations by using automatically selected meta-path and contrastive learning","display_name":"MPCLCDA: predicting circRNA\u2013disease associations by using automatically selected meta-path and contrastive learning","publication_year":2023,"publication_date":"2023-06-16","ids":{"openalex":"https://openalex.org/W4381046896","doi":"https://doi.org/10.1093/bib/bbad227","pmid":"https://pubmed.ncbi.nlm.nih.gov/37328701"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad227","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad227","pdf_url":"https://academic.oup.com/bib/article-pdf/24/4/bbad227/50917358/bbad227.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/4/bbad227/50917358/bbad227.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100712198","display_name":"Wei Liu","orcid":"https://orcid.org/0009-0008-2009-6069"},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wei Liu","raw_affiliation_strings":["School of Computer Science, Xiangtan University , Xiangtan, 411105 , China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Xiangtan University , Xiangtan, 411105 , China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065694327","display_name":"Ting Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ting Tang","raw_affiliation_strings":["School of Computer Science, Xiangtan University , Xiangtan, 411105 , China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Xiangtan University , Xiangtan, 411105 , China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100693475","display_name":"Xu Lu","orcid":"https://orcid.org/0000-0002-6097-032X"},"institutions":[{"id":"https://openalex.org/I2800970254","display_name":"State Intellectual Property Office","ror":"https://ror.org/00zrjgm10","country_code":"CN","type":"government","lineage":["https://openalex.org/I2800970254"]},{"id":"https://openalex.org/I4210122543","display_name":"Guangdong Polytechnic Normal University","ror":"https://ror.org/02pcb5m77","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210122543"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xu Lu","raw_affiliation_strings":["Guangdong Provincial Key Laboratory of Intellectual Property Big Data , Guangzhou 510665 , China","School of Computer Science, Guangdong Polytechnic Normal University , Guangzhou 510665 , China"],"affiliations":[{"raw_affiliation_string":"Guangdong Provincial Key Laboratory of Intellectual Property Big Data , Guangzhou 510665 , China","institution_ids":["https://openalex.org/I2800970254"]},{"raw_affiliation_string":"School of Computer Science, Guangdong Polytechnic Normal University , Guangzhou 510665 , China","institution_ids":["https://openalex.org/I4210122543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044283271","display_name":"Xiangzheng Fu","orcid":"https://orcid.org/0000-0001-6840-2573"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangzheng Fu","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University , Changsha, 410000 , China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University , Changsha, 410000 , China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101439676","display_name":"Yang Yu","orcid":"https://orcid.org/0009-0005-1516-0837"},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Yang","raw_affiliation_strings":["School of Computer Science, Xiangtan University , Xiangtan, 411105 , China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Xiangtan University , Xiangtan, 411105 , China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100432712","display_name":"Peng Li","orcid":"https://orcid.org/0000-0002-5078-5091"},"institutions":[{"id":"https://openalex.org/I121296143","display_name":"Hunan University of Science and Technology","ror":"https://ror.org/02m9vrb24","country_code":"CN","type":"education","lineage":["https://openalex.org/I121296143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Peng","raw_affiliation_strings":["School of Computer Science and Engineering, Hunan University of Science and Technology , Xiangtan, 411201 , China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Hunan University of Science and Technology , Xiangtan, 411201 , China","institution_ids":["https://openalex.org/I121296143"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100712198"],"corresponding_institution_ids":["https://openalex.org/I4610292"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":10.5091,"has_fulltext":true,"cited_by_count":67,"citation_normalized_percentile":{"value":0.98817906,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"24","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9732000231742859,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.714754045009613},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5921180844306946},{"id":"https://openalex.org/keywords/receiver-operating-characteristic","display_name":"Receiver operating characteristic","score":0.4871542155742645},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4853764772415161},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.4666127562522888},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.45860207080841064},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4543024003505707},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.4142322540283203},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3887270390987396},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32268232107162476},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.13770732283592224}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.714754045009613},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5921180844306946},{"id":"https://openalex.org/C58471807","wikidata":"https://www.wikidata.org/wiki/Q327120","display_name":"Receiver operating characteristic","level":2,"score":0.4871542155742645},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4853764772415161},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.4666127562522888},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.45860207080841064},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4543024003505707},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.4142322540283203},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3887270390987396},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32268232107162476},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.13770732283592224},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad227","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad227","pdf_url":"https://academic.oup.com/bib/article-pdf/24/4/bbad227/50917358/bbad227.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37328701","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37328701","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbad227","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad227","pdf_url":"https://academic.oup.com/bib/article-pdf/24/4/bbad227/50917358/bbad227.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4381046896.pdf","grobid_xml":"https://content.openalex.org/works/W4381046896.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W2124045889","https://openalex.org/W2582820149","https://openalex.org/W2734743660","https://openalex.org/W2765950793","https://openalex.org/W2780777007","https://openalex.org/W2799307902","https://openalex.org/W2800766678","https://openalex.org/W2807602500","https://openalex.org/W2809363952","https://openalex.org/W2884943532","https://openalex.org/W2888358121","https://openalex.org/W2898991725","https://openalex.org/W2902349692","https://openalex.org/W2939351159","https://openalex.org/W2953577247","https://openalex.org/W2962928958","https://openalex.org/W2969465064","https://openalex.org/W2970066309","https://openalex.org/W2974612830","https://openalex.org/W2989834656","https://openalex.org/W2991743543","https://openalex.org/W2999336918","https://openalex.org/W3020614442","https://openalex.org/W3027920886","https://openalex.org/W3034021036","https://openalex.org/W3082620742","https://openalex.org/W3084155903","https://openalex.org/W3088932934","https://openalex.org/W3094881119","https://openalex.org/W3101284010","https://openalex.org/W3101970095","https://openalex.org/W3121523853","https://openalex.org/W3135887549","https://openalex.org/W3167160116","https://openalex.org/W3172789446","https://openalex.org/W3174982942","https://openalex.org/W3198147676","https://openalex.org/W3209882608","https://openalex.org/W4200110750","https://openalex.org/W4210852391","https://openalex.org/W4220859562","https://openalex.org/W4225537122","https://openalex.org/W4225873739","https://openalex.org/W4226097900","https://openalex.org/W4280587098","https://openalex.org/W4283706978","https://openalex.org/W4285076853","https://openalex.org/W4293214728","https://openalex.org/W4294990936","https://openalex.org/W4307502334","https://openalex.org/W4309098239","https://openalex.org/W4311285804","https://openalex.org/W4312084649","https://openalex.org/W4313424256","https://openalex.org/W4313561039","https://openalex.org/W4360770766","https://openalex.org/W4366464224","https://openalex.org/W6767098714","https://openalex.org/W6848988867"],"related_works":["https://openalex.org/W4385649027","https://openalex.org/W2970784617","https://openalex.org/W4293226380","https://openalex.org/W2126639667","https://openalex.org/W2217963778","https://openalex.org/W2129882004","https://openalex.org/W4303685026","https://openalex.org/W1980276147","https://openalex.org/W3187081201","https://openalex.org/W1995646291"],"abstract_inverted_index":{"Circular":[0],"RNA":[1],"(circRNA)":[2],"is":[3,112,148],"closely":[4],"associated":[5],"with":[6,52,150],"human":[7,14,186],"diseases.":[8],"Accordingly,":[9],"identifying":[10],"the":[11,73,77,99,116,122,127,160,167,190],"associations":[12,41],"between":[13,129],"diseases":[15,187],"and":[16,24,31,55,69,90,97,120,131,170,179,193],"circRNA":[17,86],"can":[18,36],"help":[19],"in":[20,50],"disease":[21,88],"prevention,":[22],"diagnosis":[23],"treatment.":[25],"Traditional":[26],"methods":[27,152],"are":[28,44,139],"time":[29],"consuming":[30],"laborious.":[32],"Meanwhile,":[33],"computational":[34],"models":[35],"effectively":[37],"predict":[38],"potential":[39],"circRNA-disease":[40,137],"(CDAs),":[42],"but":[43],"restricted":[45],"by":[46],"limited":[47],"data,":[48],"resulting":[49],"data":[51],"high":[53],"dimension":[54],"imbalance.":[56],"In":[57],"this":[58,197],"study,":[59],"we":[60],"propose":[61],"a":[62,80,142],"model":[63,78],"based":[64,84],"on":[65,85,153,185],"automatically":[66,94],"selected":[67,95],"meta-path":[68,96],"contrastive":[70,110],"learning,":[71],"called":[72],"MPCLCDA":[74],"model.":[75],"First,":[76],"constructs":[79],"new":[81],"heterogeneous":[82],"network":[83],"similarity,":[87],"similarity":[89],"known":[91],"association,":[92],"via":[93,105],"obtains":[98],"low-dimensional":[100],"fusion":[101,117],"features":[102,118,124],"of":[103,196],"nodes":[104],"graph":[106],"convolutional":[107],"networks.":[108],"Then,":[109],"learning":[111],"used":[113],"to":[114],"optimize":[115],"further,":[119],"obtain":[121],"node":[123],"that":[125],"make":[126],"distinction":[128],"positive":[130],"negative":[132],"samples":[133],"more":[134],"evident.":[135],"Finally,":[136],"scores":[138],"predicted":[140],"through":[141],"multilayer":[143],"perceptron.":[144],"The":[145,156],"proposed":[146],"method":[147],"compared":[149],"advanced":[151],"four":[154],"datasets.":[155],"average":[157],"area":[158,165],"under":[159,166,173],"receiver":[161],"operating":[162],"characteristic":[163],"curve,":[164],"precision-recall":[168],"curve":[169],"F1":[171],"score":[172],"5-fold":[174],"cross-validation":[175],"reached":[176],"0.9752,":[177],"0.9831":[178],"0.9745,":[180],"respectively.":[181],"Simultaneously,":[182],"case":[183],"studies":[184],"further":[188],"prove":[189],"predictive":[191],"ability":[192],"application":[194],"value":[195],"method.":[198]},"counts_by_year":[{"year":2025,"cited_by_count":27},{"year":2024,"cited_by_count":30},{"year":2023,"cited_by_count":10}],"updated_date":"2026-03-13T14:20:09.374765","created_date":"2025-10-10T00:00:00"}
