{"id":"https://openalex.org/W4380729715","doi":"https://doi.org/10.1093/bib/bbad226","title":"PharmBERT: a domain-specific BERT model for drug labels","display_name":"PharmBERT: a domain-specific BERT model for drug labels","publication_year":2023,"publication_date":"2023-06-14","ids":{"openalex":"https://openalex.org/W4380729715","doi":"https://doi.org/10.1093/bib/bbad226","pmid":"https://pubmed.ncbi.nlm.nih.gov/37317617"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad226","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbad226","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018239621","display_name":"Taha ValizadehAslani","orcid":"https://orcid.org/0000-0001-6338-8469"},"institutions":[{"id":"https://openalex.org/I72816309","display_name":"Drexel University","ror":"https://ror.org/04bdffz58","country_code":"US","type":"education","lineage":["https://openalex.org/I72816309"]},{"id":"https://openalex.org/I922845939","display_name":"Philadelphia University","ror":"https://ror.org/03zzmyz63","country_code":"US","type":"education","lineage":["https://openalex.org/I922845939"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Taha ValizadehAslani","raw_affiliation_strings":["Department of Electrical and Computer Engineering , College of Engineering, , Philadelphia, PA , USA","Drexel University , College of Engineering, , Philadelphia, PA , USA","Department of Electrical and Computer Engineering, College of Engineering, Drexel University, Philadelphia, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering , College of Engineering, , Philadelphia, PA , USA","institution_ids":["https://openalex.org/I922845939"]},{"raw_affiliation_string":"Drexel University , College of Engineering, , Philadelphia, PA , USA","institution_ids":["https://openalex.org/I72816309"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, College of Engineering, Drexel University, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I72816309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102987027","display_name":"Yiwen Shi","orcid":"https://orcid.org/0000-0003-4152-1470"},"institutions":[{"id":"https://openalex.org/I72816309","display_name":"Drexel University","ror":"https://ror.org/04bdffz58","country_code":"US","type":"education","lineage":["https://openalex.org/I72816309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yiwen Shi","raw_affiliation_strings":["College of Computing and Informatics, Drexel University , Philadelphia, PA , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computing and Informatics, Drexel University , Philadelphia, PA , USA","institution_ids":["https://openalex.org/I72816309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022371052","display_name":"Ping Ren","orcid":"https://orcid.org/0000-0002-4022-6667"},"institutions":[{"id":"https://openalex.org/I1320320070","display_name":"United States Food and Drug Administration","ror":"https://ror.org/034xvzb47","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I1333606569","display_name":"Center for Drug Evaluation and Research","ror":"https://ror.org/00yf3tm42","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070","https://openalex.org/I1333606569"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ping Ren","raw_affiliation_strings":["Office of Research and Standards , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","United States Food and Drug Administration , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","Office of Research and Standards, Office of Generic Drugs, Center for Drug Evaluation and Research, United States Food and Drug Administration, Silver Spring, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Office of Research and Standards , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","institution_ids":["https://openalex.org/I1333606569"]},{"raw_affiliation_string":"United States Food and Drug Administration , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","institution_ids":["https://openalex.org/I1320320070","https://openalex.org/I1333606569"]},{"raw_affiliation_string":"Office of Research and Standards, Office of Generic Drugs, Center for Drug Evaluation and Research, United States Food and Drug Administration, Silver Spring, MD, USA","institution_ids":["https://openalex.org/I1320320070","https://openalex.org/I1333606569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100378323","display_name":"Jing Wang","orcid":"https://orcid.org/0000-0001-6063-9808"},"institutions":[{"id":"https://openalex.org/I1320320070","display_name":"United States Food and Drug Administration","ror":"https://ror.org/034xvzb47","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I1333606569","display_name":"Center for Drug Evaluation and Research","ror":"https://ror.org/00yf3tm42","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070","https://openalex.org/I1333606569"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jing Wang","raw_affiliation_strings":["Office of Research and Standards , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","United States Food and Drug Administration , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","Office of Research and Standards, Office of Generic Drugs, Center for Drug Evaluation and Research, United States Food and Drug Administration, Silver Spring, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Office of Research and Standards , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","institution_ids":["https://openalex.org/I1333606569"]},{"raw_affiliation_string":"United States Food and Drug Administration , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","institution_ids":["https://openalex.org/I1320320070","https://openalex.org/I1333606569"]},{"raw_affiliation_string":"Office of Research and Standards, Office of Generic Drugs, Center for Drug Evaluation and Research, United States Food and Drug Administration, Silver Spring, MD, USA","institution_ids":["https://openalex.org/I1320320070","https://openalex.org/I1333606569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100388218","display_name":"Yi Zhang","orcid":"https://orcid.org/0000-0002-7731-0301"},"institutions":[{"id":"https://openalex.org/I1320320070","display_name":"United States Food and Drug Administration","ror":"https://ror.org/034xvzb47","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I1333606569","display_name":"Center for Drug Evaluation and Research","ror":"https://ror.org/00yf3tm42","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070","https://openalex.org/I1333606569"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yi Zhang","raw_affiliation_strings":["Office of Research and Standards , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","United States Food and Drug Administration , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","Office of Research and Standards, Office of Generic Drugs, Center for Drug Evaluation and Research, United States Food and Drug Administration, Silver Spring, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Office of Research and Standards , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","institution_ids":["https://openalex.org/I1333606569"]},{"raw_affiliation_string":"United States Food and Drug Administration , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","institution_ids":["https://openalex.org/I1320320070","https://openalex.org/I1333606569"]},{"raw_affiliation_string":"Office of Research and Standards, Office of Generic Drugs, Center for Drug Evaluation and Research, United States Food and Drug Administration, Silver Spring, MD, USA","institution_ids":["https://openalex.org/I1320320070","https://openalex.org/I1333606569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101632164","display_name":"Meng Hu","orcid":"https://orcid.org/0000-0003-2719-3263"},"institutions":[{"id":"https://openalex.org/I1320320070","display_name":"United States Food and Drug Administration","ror":"https://ror.org/034xvzb47","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I1333606569","display_name":"Center for Drug Evaluation and Research","ror":"https://ror.org/00yf3tm42","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070","https://openalex.org/I1333606569"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meng Hu","raw_affiliation_strings":["Office of Research and Standards , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","United States Food and Drug Administration , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","Office of Research and Standards, Office of Generic Drugs, Center for Drug Evaluation and Research, United States Food and Drug Administration, Silver Spring, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Office of Research and Standards , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","institution_ids":["https://openalex.org/I1333606569"]},{"raw_affiliation_string":"United States Food and Drug Administration , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","institution_ids":["https://openalex.org/I1320320070","https://openalex.org/I1333606569"]},{"raw_affiliation_string":"Office of Research and Standards, Office of Generic Drugs, Center for Drug Evaluation and Research, United States Food and Drug Administration, Silver Spring, MD, USA","institution_ids":["https://openalex.org/I1320320070","https://openalex.org/I1333606569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115603771","display_name":"Liang Zhao","orcid":"https://orcid.org/0000-0002-0962-5870"},"institutions":[{"id":"https://openalex.org/I1320320070","display_name":"United States Food and Drug Administration","ror":"https://ror.org/034xvzb47","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I1333606569","display_name":"Center for Drug Evaluation and Research","ror":"https://ror.org/00yf3tm42","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070","https://openalex.org/I1333606569"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liang Zhao","raw_affiliation_strings":["Office of Research and Standards , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","United States Food and Drug Administration , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","Office of Research and Standards, Office of Generic Drugs, Center for Drug Evaluation and Research, United States Food and Drug Administration, Silver Spring, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Office of Research and Standards , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","institution_ids":["https://openalex.org/I1333606569"]},{"raw_affiliation_string":"United States Food and Drug Administration , Office of Generic Drugs, Center for Drug Evaluation and Research, , Silver Spring, MD , USA","institution_ids":["https://openalex.org/I1320320070","https://openalex.org/I1333606569"]},{"raw_affiliation_string":"Office of Research and Standards, Office of Generic Drugs, Center for Drug Evaluation and Research, United States Food and Drug Administration, Silver Spring, MD, USA","institution_ids":["https://openalex.org/I1320320070","https://openalex.org/I1333606569"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036766367","display_name":"Hualou Liang","orcid":"https://orcid.org/0000-0002-3805-1837"},"institutions":[{"id":"https://openalex.org/I72816309","display_name":"Drexel University","ror":"https://ror.org/04bdffz58","country_code":"US","type":"education","lineage":["https://openalex.org/I72816309"]},{"id":"https://openalex.org/I922845939","display_name":"Philadelphia University","ror":"https://ror.org/03zzmyz63","country_code":"US","type":"education","lineage":["https://openalex.org/I922845939"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hualou Liang","raw_affiliation_strings":["Drexel University , Science and Health Systems, , Philadelphia, PA , USA","School of Biomedical Engineering , Science and Health Systems, , Philadelphia, PA , USA","School of Biomedical Engineering, Science and Health Systems, Drexel University, Philadelphia, PA, USA"],"raw_orcid":"https://orcid.org/0000-0002-3805-1837","affiliations":[{"raw_affiliation_string":"Drexel University , Science and Health Systems, , Philadelphia, PA , USA","institution_ids":["https://openalex.org/I72816309"]},{"raw_affiliation_string":"School of Biomedical Engineering , Science and Health Systems, , Philadelphia, PA , USA","institution_ids":["https://openalex.org/I922845939"]},{"raw_affiliation_string":"School of Biomedical Engineering, Science and Health Systems, Drexel University, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I72816309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5036766367"],"corresponding_institution_ids":["https://openalex.org/I72816309","https://openalex.org/I922845939"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":6.0065,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.97183439,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"24","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8198482990264893},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.7233365774154663},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.5980045795440674},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5673186779022217},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.5338909029960632},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.506360650062561},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.47175082564353943},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.46893739700317383},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.45371517539024353},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.45013347268104553},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4468532204627991},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3597240746021271},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3541845679283142},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.10306963324546814}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8198482990264893},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.7233365774154663},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.5980045795440674},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5673186779022217},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.5338909029960632},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.506360650062561},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.47175082564353943},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.46893739700317383},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.45371517539024353},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.45013347268104553},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4468532204627991},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3597240746021271},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3541845679283142},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10306963324546814},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004348","descriptor_name":"Drug Labeling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004348","descriptor_name":"Drug Labeling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004348","descriptor_name":"Drug Labeling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad226","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbad226","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37317617","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37317617","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.75}],"awards":[{"id":"https://openalex.org/G2816062445","display_name":null,"funder_award_id":"75F40119C10106","funder_id":"https://openalex.org/F4320332163","funder_display_name":"U.S. Food and Drug Administration"}],"funders":[{"id":"https://openalex.org/F4320332163","display_name":"U.S. Food and Drug Administration","ror":"https://ror.org/034xvzb47"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1566289585","https://openalex.org/W2120831232","https://openalex.org/W2165748167","https://openalex.org/W2170189740","https://openalex.org/W2396881363","https://openalex.org/W2422461554","https://openalex.org/W2525778437","https://openalex.org/W2765742249","https://openalex.org/W2767891136","https://openalex.org/W2807245675","https://openalex.org/W2911489562","https://openalex.org/W2923014074","https://openalex.org/W2937845937","https://openalex.org/W2963809228","https://openalex.org/W2965373594","https://openalex.org/W2970120757","https://openalex.org/W2970476646","https://openalex.org/W2970597249","https://openalex.org/W2978017171","https://openalex.org/W2979826702","https://openalex.org/W3034238904","https://openalex.org/W3034640977","https://openalex.org/W3046375318","https://openalex.org/W3099950029","https://openalex.org/W3100452049","https://openalex.org/W3157265962","https://openalex.org/W3172028705","https://openalex.org/W4206252531","https://openalex.org/W4287067652","https://openalex.org/W4288089799","https://openalex.org/W4313837679","https://openalex.org/W4385245566","https://openalex.org/W6727690538","https://openalex.org/W6739901393","https://openalex.org/W6750615492","https://openalex.org/W6761260114","https://openalex.org/W6761672038","https://openalex.org/W6763701032","https://openalex.org/W6766673545","https://openalex.org/W6767535143","https://openalex.org/W6768851824","https://openalex.org/W6769627184","https://openalex.org/W6799207902"],"related_works":["https://openalex.org/W2334378031","https://openalex.org/W4387517132","https://openalex.org/W2916255597","https://openalex.org/W2999302224","https://openalex.org/W3091569222","https://openalex.org/W4241018868","https://openalex.org/W1495833002","https://openalex.org/W2075635421","https://openalex.org/W2964631078","https://openalex.org/W3160627956"],"abstract_inverted_index":{"Human":[0],"prescription":[1],"drug":[2,21,50,62,79,154,181,206],"labeling":[3,29,45],"contains":[4,46],"a":[5,139,174],"summary":[6],"of":[7,19,70,77,129,150,220,228,240],"the":[8,14,20,24,67,71,75,114,124,127,130,133,148,169,180,194,205,211,217,241],"essential":[9],"scientific":[10],"information":[11,48,59,103],"needed":[12],"for":[13,37],"safe":[15],"and":[16,22,41,55,135,198,230],"effective":[17],"use":[18],"includes":[23],"Prescribing":[25],"Information,":[26],"FDA-approved":[27],"patient":[28],"(Medication":[30],"Guides,":[31],"Patient":[32],"Package":[33],"Inserts":[34],"and/or":[35,39],"Instructions":[36],"Use),":[38],"carton":[40],"container":[42],"labeling.":[43],"Drug":[44],"critical":[47],"about":[49],"products,":[51],"such":[52],"as":[53],"pharmacokinetics":[54],"adverse":[56,68],"events.":[57],"Automatic":[58],"extraction":[60],"from":[61,94],"labels":[63,182],"may":[64],"facilitate":[65],"finding":[66,74],"reaction":[69],"drugs":[72],"or":[73],"interaction":[76],"one":[78],"with":[80],"another":[81],"drug.":[82],"Natural":[83],"language":[84,120,151],"processing":[85],"(NLP)":[86],"techniques,":[87],"especially":[88],"recently":[89],"developed":[90,170],"Bidirectional":[91],"Encoder":[92],"Representations":[93],"Transformers":[95],"(BERT),":[96],"have":[97],"exhibited":[98],"exceptional":[99],"merits":[100],"in":[101,108,132,153,200,204],"text-based":[102],"extraction.":[104],"A":[105],"common":[106],"paradigm":[107],"training":[109],"BERT":[110,164,175],"is":[111,173,222,243],"to":[112,216],"pretrain":[113],"model":[115,125,176,192],"on":[116,138,179],"large":[117],"unlabeled":[118],"generic":[119],"corpora,":[121],"so":[122],"that":[123,190],"learns":[126],"distribution":[128],"words":[131],"language,":[134],"then":[136],"fine-tune":[137],"downstream":[140],"task.":[141],"In":[142],"this":[143],"paper,":[144],"first,":[145],"we":[146,167],"show":[147],"uniqueness":[149],"used":[152],"labels,":[155],"which":[156,172],"therefore":[157],"cannot":[158],"be":[159],"optimally":[160],"handled":[161],"by":[162,224],"other":[163],"models.":[165],"Then,":[166],"present":[168],"PharmBERT,":[171,229],"specifically":[177],"pretrained":[178],"(publicly":[183],"available":[184],"at":[185],"Hugging":[186],"Face).":[187],"We":[188],"demonstrate":[189],"our":[191],"outperforms":[193],"vanilla":[195],"BERT,":[196],"ClinicalBERT":[197],"BioBERT":[199],"multiple":[201],"NLP":[202],"tasks":[203],"label":[207],"domain.":[208],"Moreover,":[209],"how":[210,234],"domain-specific":[212],"pretraining":[213],"has":[214],"contributed":[215],"superior":[218],"performance":[219],"PharmBERT":[221],"demonstrated":[223],"analyzing":[225],"different":[226,237],"layers":[227],"more":[231],"insight":[232],"into":[233],"it":[235],"understands":[236],"linguistic":[238],"aspects":[239],"data":[242],"gained.":[244]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":4}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
