{"id":"https://openalex.org/W4380738334","doi":"https://doi.org/10.1093/bib/bbad217","title":"Improved structure-related prediction for insufficient homologous proteins using MSA enhancement and pre-trained language model","display_name":"Improved structure-related prediction for insufficient homologous proteins using MSA enhancement and pre-trained language model","publication_year":2023,"publication_date":"2023-06-15","ids":{"openalex":"https://openalex.org/W4380738334","doi":"https://doi.org/10.1093/bib/bbad217","pmid":"https://pubmed.ncbi.nlm.nih.gov/37321965"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad217","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad217","pdf_url":"https://academic.oup.com/bib/article-pdf/24/4/bbad217/50917116/bbad217.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/4/bbad217/50917116/bbad217.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005423646","display_name":"Qiaozhen Meng","orcid":null},"institutions":[{"id":"https://openalex.org/I132369690","display_name":"Tianjin University of Science and Technology","ror":"https://ror.org/018rbtf37","country_code":"CN","type":"education","lineage":["https://openalex.org/I132369690"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiaozhen Meng","raw_affiliation_strings":["School of Computer Science and Technology, College of Intelligence and Computing, Tianjin University , Tianjin , China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, College of Intelligence and Computing, Tianjin University , Tianjin , China","institution_ids":["https://openalex.org/I132369690"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100702161","display_name":"Fei Guo","orcid":"https://orcid.org/0000-0001-8346-0798"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fei Guo","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , Changsha 410083 , China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha 410083 , China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001619694","display_name":"Jijun Tang","orcid":"https://orcid.org/0000-0002-6377-536X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jijun Tang","raw_affiliation_strings":["Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences , Shenzhen 518000 , China"],"affiliations":[{"raw_affiliation_string":"Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences , Shenzhen 518000 , China","institution_ids":["https://openalex.org/I4210145761","https://openalex.org/I19820366"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5001619694","https://openalex.org/A5100702161"],"corresponding_institution_ids":["https://openalex.org/I139660479","https://openalex.org/I19820366","https://openalex.org/I4210145761"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":5.1528,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.9602424,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"24","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6717984676361084},{"id":"https://openalex.org/keywords/protein-superfamily","display_name":"Protein superfamily","score":0.6357042789459229},{"id":"https://openalex.org/keywords/homology-modeling","display_name":"Homology modeling","score":0.590694785118103},{"id":"https://openalex.org/keywords/threading","display_name":"Threading (protein sequence)","score":0.520564615726471},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47128787636756897},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42035651206970215},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3586313724517822},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3580697774887085},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3570763170719147},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21691247820854187},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1789814829826355},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1570768654346466},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.10245633125305176}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6717984676361084},{"id":"https://openalex.org/C178180057","wikidata":"https://www.wikidata.org/wiki/Q7251477","display_name":"Protein superfamily","level":3,"score":0.6357042789459229},{"id":"https://openalex.org/C169627665","wikidata":"https://www.wikidata.org/wiki/Q5767913","display_name":"Homology modeling","level":3,"score":0.590694785118103},{"id":"https://openalex.org/C200307862","wikidata":"https://www.wikidata.org/wiki/Q7797175","display_name":"Threading (protein sequence)","level":3,"score":0.520564615726471},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47128787636756897},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42035651206970215},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3586313724517822},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3580697774887085},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3570763170719147},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21691247820854187},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1789814829826355},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1570768654346466},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.10245633125305176},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005668","descriptor_name":"Furylfuramide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005668","descriptor_name":"Furylfuramide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005668","descriptor_name":"Furylfuramide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad217","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad217","pdf_url":"https://academic.oup.com/bib/article-pdf/24/4/bbad217/50917116/bbad217.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37321965","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37321965","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbad217","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad217","pdf_url":"https://academic.oup.com/bib/article-pdf/24/4/bbad217/50917116/bbad217.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/1","score":0.7099999785423279,"display_name":"No poverty"}],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1558580378","display_name":null,"funder_award_id":"NSFC 62172296","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1992415837","display_name":null,"funder_award_id":"131060","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2147514142","display_name":null,"funder_award_id":"62172296","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2802911279","display_name":null,"funder_award_id":"Young","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2981938667","display_name":null,"funder_award_id":"Shenzhen","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G384178317","display_name":null,"funder_award_id":"02008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4020255992","display_name":null,"funder_award_id":"Project","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4076804852","display_name":null,"funder_award_id":"2020YFA0908400","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5939423041","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8161904097","display_name":null,"funder_award_id":"202008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G839331110","display_name":null,"funder_award_id":"TD202008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8502045713","display_name":null,"funder_award_id":"2020YFA0908400","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321514","display_name":"Central South University","ror":"https://ror.org/00f1zfq44"},{"id":"https://openalex.org/F4320335581","display_name":"Young Scientists Fund","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4380738334.pdf","grobid_xml":"https://content.openalex.org/works/W4380738334.grobid-xml"},"referenced_works_count":71,"referenced_works":["https://openalex.org/W1543773936","https://openalex.org/W1966078827","https://openalex.org/W1969051510","https://openalex.org/W1992983658","https://openalex.org/W2002638840","https://openalex.org/W2008545402","https://openalex.org/W2010688088","https://openalex.org/W2015688756","https://openalex.org/W2019020499","https://openalex.org/W2023333666","https://openalex.org/W2034278689","https://openalex.org/W2051210555","https://openalex.org/W2059223767","https://openalex.org/W2069458148","https://openalex.org/W2094458603","https://openalex.org/W2102461176","https://openalex.org/W2114340287","https://openalex.org/W2115547583","https://openalex.org/W2130479394","https://openalex.org/W2151831732","https://openalex.org/W2153153865","https://openalex.org/W2153187042","https://openalex.org/W2166701319","https://openalex.org/W2169478909","https://openalex.org/W2171559274","https://openalex.org/W2173591891","https://openalex.org/W2181261574","https://openalex.org/W2574496196","https://openalex.org/W2606439133","https://openalex.org/W2624968853","https://openalex.org/W2780845733","https://openalex.org/W2949867299","https://openalex.org/W2950374603","https://openalex.org/W2950954328","https://openalex.org/W2952317511","https://openalex.org/W2963457143","https://openalex.org/W2971003495","https://openalex.org/W2980699342","https://openalex.org/W2984894304","https://openalex.org/W2987090428","https://openalex.org/W2997234557","https://openalex.org/W2999044305","https://openalex.org/W3019905301","https://openalex.org/W3044593510","https://openalex.org/W3110341782","https://openalex.org/W3112376646","https://openalex.org/W3133480057","https://openalex.org/W3136751755","https://openalex.org/W3146944767","https://openalex.org/W3157271872","https://openalex.org/W3163965514","https://openalex.org/W3177828909","https://openalex.org/W3184462297","https://openalex.org/W3216341763","https://openalex.org/W4210279159","https://openalex.org/W4281291878","https://openalex.org/W4281790896","https://openalex.org/W4296087385","https://openalex.org/W4300861364","https://openalex.org/W4309228383","https://openalex.org/W4309506674","https://openalex.org/W4313430582","https://openalex.org/W4315928769","https://openalex.org/W4385245566","https://openalex.org/W6686288242","https://openalex.org/W6739901393","https://openalex.org/W6769989246","https://openalex.org/W6781022930","https://openalex.org/W6797492301","https://openalex.org/W6839586037","https://openalex.org/W6846473853"],"related_works":["https://openalex.org/W2380350064","https://openalex.org/W2040198144","https://openalex.org/W1741740882","https://openalex.org/W2345114863","https://openalex.org/W2232801722","https://openalex.org/W2163000619","https://openalex.org/W2050330741","https://openalex.org/W2253761889","https://openalex.org/W646353556","https://openalex.org/W2123053169"],"abstract_inverted_index":{"guofei@csu.edu.cn,":[0],"jj.tang@siat.ac.cn.":[1]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":2}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
