{"id":"https://openalex.org/W4378745253","doi":"https://doi.org/10.1093/bib/bbad194","title":"DCiPatho: deep cross-fusion networks for genome scale identification of pathogens","display_name":"DCiPatho: deep cross-fusion networks for genome scale identification of pathogens","publication_year":2023,"publication_date":"2023-05-30","ids":{"openalex":"https://openalex.org/W4378745253","doi":"https://doi.org/10.1093/bib/bbad194","pmid":"https://pubmed.ncbi.nlm.nih.gov/37249547"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad194","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad194","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad194/50487328/bbad194.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad194/50487328/bbad194.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017193147","display_name":"Gaofei Jiang","orcid":"https://orcid.org/0000-0002-5331-739X"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]},{"id":"https://openalex.org/I4210159340","display_name":"The Synergetic Innovation Center for Advanced Materials","ror":"https://ror.org/05nzc1r88","country_code":"CN","type":"facility","lineage":["https://openalex.org/I134687103","https://openalex.org/I41198531","https://openalex.org/I4210159340","https://openalex.org/I76130692","https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Gaofei Jiang","raw_affiliation_strings":["Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I4210159340"]},{"raw_affiliation_string":"Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100628888","display_name":"Jiaxuan Zhang","orcid":"https://orcid.org/0000-0003-2439-7607"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiaxuan Zhang","raw_affiliation_strings":["College of Artificial Intelligence, Nanjing Agricultural University , Nanjing 210095, Jiangsu , China"],"affiliations":[{"raw_affiliation_string":"College of Artificial Intelligence, Nanjing Agricultural University , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077857361","display_name":"Yaozhong Zhang","orcid":"https://orcid.org/0000-0002-8024-6523"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]},{"id":"https://openalex.org/I4210159340","display_name":"The Synergetic Innovation Center for Advanced Materials","ror":"https://ror.org/05nzc1r88","country_code":"CN","type":"facility","lineage":["https://openalex.org/I134687103","https://openalex.org/I41198531","https://openalex.org/I4210159340","https://openalex.org/I76130692","https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaozhong Zhang","raw_affiliation_strings":["Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I4210159340"]},{"raw_affiliation_string":"Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012549475","display_name":"Xinrun Yang","orcid":"https://orcid.org/0000-0002-6482-8734"},"institutions":[{"id":"https://openalex.org/I4210159340","display_name":"The Synergetic Innovation Center for Advanced Materials","ror":"https://ror.org/05nzc1r88","country_code":"CN","type":"facility","lineage":["https://openalex.org/I134687103","https://openalex.org/I41198531","https://openalex.org/I4210159340","https://openalex.org/I76130692","https://openalex.org/I99065089"]},{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinrun Yang","raw_affiliation_strings":["Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I4210159340"]},{"raw_affiliation_string":"Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101962419","display_name":"Tingting Li","orcid":"https://orcid.org/0000-0003-4583-946X"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]},{"id":"https://openalex.org/I4210159340","display_name":"The Synergetic Innovation Center for Advanced Materials","ror":"https://ror.org/05nzc1r88","country_code":"CN","type":"facility","lineage":["https://openalex.org/I134687103","https://openalex.org/I41198531","https://openalex.org/I4210159340","https://openalex.org/I76130692","https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tingting Li","raw_affiliation_strings":["Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I4210159340"]},{"raw_affiliation_string":"Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047284728","display_name":"Ningqi Wang","orcid":"https://orcid.org/0000-0002-7788-4364"},"institutions":[{"id":"https://openalex.org/I4210159340","display_name":"The Synergetic Innovation Center for Advanced Materials","ror":"https://ror.org/05nzc1r88","country_code":"CN","type":"facility","lineage":["https://openalex.org/I134687103","https://openalex.org/I41198531","https://openalex.org/I4210159340","https://openalex.org/I76130692","https://openalex.org/I99065089"]},{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ningqi Wang","raw_affiliation_strings":["Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I4210159340"]},{"raw_affiliation_string":"Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023836500","display_name":"Xingjian Chen","orcid":"https://orcid.org/0000-0001-9639-1584"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Xingjian Chen","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong , Hong Kong 999077 , China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong , Hong Kong 999077 , China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061592897","display_name":"Fang\u2010Jie Zhao","orcid":"https://orcid.org/0000-0002-0164-169X"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]},{"id":"https://openalex.org/I4210159340","display_name":"The Synergetic Innovation Center for Advanced Materials","ror":"https://ror.org/05nzc1r88","country_code":"CN","type":"facility","lineage":["https://openalex.org/I134687103","https://openalex.org/I41198531","https://openalex.org/I4210159340","https://openalex.org/I76130692","https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fang-Jie Zhao","raw_affiliation_strings":["Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I4210159340"]},{"raw_affiliation_string":"Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031172391","display_name":"Zhong Wei","orcid":"https://orcid.org/0000-0002-7967-4897"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]},{"id":"https://openalex.org/I4210159340","display_name":"The Synergetic Innovation Center for Advanced Materials","ror":"https://ror.org/05nzc1r88","country_code":"CN","type":"facility","lineage":["https://openalex.org/I134687103","https://openalex.org/I41198531","https://openalex.org/I4210159340","https://openalex.org/I76130692","https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhong Wei","raw_affiliation_strings":["Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I4210159340"]},{"raw_affiliation_string":"Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054767122","display_name":"Yangchun Xu","orcid":"https://orcid.org/0000-0003-2740-5561"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]},{"id":"https://openalex.org/I4210159340","display_name":"The Synergetic Innovation Center for Advanced Materials","ror":"https://ror.org/05nzc1r88","country_code":"CN","type":"facility","lineage":["https://openalex.org/I134687103","https://openalex.org/I41198531","https://openalex.org/I4210159340","https://openalex.org/I76130692","https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yangchun Xu","raw_affiliation_strings":["Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I4210159340"]},{"raw_affiliation_string":"Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067482090","display_name":"Qirong Shen","orcid":"https://orcid.org/0000-0002-5662-9620"},"institutions":[{"id":"https://openalex.org/I4210159340","display_name":"The Synergetic Innovation Center for Advanced Materials","ror":"https://ror.org/05nzc1r88","country_code":"CN","type":"facility","lineage":["https://openalex.org/I134687103","https://openalex.org/I41198531","https://openalex.org/I4210159340","https://openalex.org/I76130692","https://openalex.org/I99065089"]},{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qirong Shen","raw_affiliation_strings":["Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I4210159340"]},{"raw_affiliation_string":"Nanjing Agricultural University , Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Laboratory of Bio-interactions and Crop Health, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Joint International Research Laboratory of Soil Health, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108847280","display_name":"Wei Xue","orcid":null},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wei Xue","raw_affiliation_strings":["College of Artificial Intelligence, Nanjing Agricultural University , Nanjing 210095, Jiangsu , China"],"affiliations":[{"raw_affiliation_string":"College of Artificial Intelligence, Nanjing Agricultural University , Nanjing 210095, Jiangsu , China","institution_ids":["https://openalex.org/I119454577"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5031172391","https://openalex.org/A5108847280"],"corresponding_institution_ids":["https://openalex.org/I119454577","https://openalex.org/I4210159340"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.7607,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.90488316,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"24","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.7008326053619385},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6639045476913452},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6162310838699341},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.604320228099823},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5932917594909668},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5121169090270996},{"id":"https://openalex.org/keywords/pathogen","display_name":"Pathogen","score":0.449381560087204},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.43982842564582825},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43474602699279785},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4094370901584625},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21106520295143127},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1704382598400116},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.08577066659927368}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7008326053619385},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6639045476913452},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6162310838699341},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.604320228099823},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5932917594909668},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5121169090270996},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.449381560087204},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.43982842564582825},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43474602699279785},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4094370901584625},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21106520295143127},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1704382598400116},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.08577066659927368}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbad194","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad194","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad194/50487328/bbad194.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37249547","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37249547","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10359081","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10359081","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10359081/pdf/bbad194.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/2b8d6afd-6d88-46f0-a61c-338ee5aa8685","is_oa":true,"landing_page_url":"https://hdl.handle.net/2031/2b8d6afd-6d88-46f0-a61c-338ee5aa8685","pdf_url":null,"source":{"id":"https://openalex.org/S7407055387","display_name":"CityU Scholars","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Jiang, G, Zhang, J, Zhang, Y, Yang, X, Li, T, Wang, N, Chen, X, Zhao, F-J, Wei, Z, Xu, Y, Shen, Q & Xue, W 2023, 'DCiPatho : deep cross-fusion networks for genome scale identification of pathogens', Briefings in Bioinformatics, vol. 24, no. 4, bbad194. https://doi.org/10.1093/bib/bbad194","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbad194","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad194","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad194/50487328/bbad194.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1268505717","display_name":null,"funder_award_id":"SBK2023030230","funder_id":"https://openalex.org/F4320322769","funder_display_name":"Natural Science Foundation of Jiangsu Province"},{"id":"https://openalex.org/G1804798301","display_name":null,"funder_award_id":"KYT2023001","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2376276132","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G286080043","display_name":null,"funder_award_id":"42007038","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3910829908","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320322769","funder_display_name":"Natural Science Foundation of Jiangsu Province"},{"id":"https://openalex.org/G4134043446","display_name":null,"funder_award_id":"42090062","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4974499567","display_name":null,"funder_award_id":"42090064","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5945699193","display_name":null,"funder_award_id":"31972504","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6085153489","display_name":null,"funder_award_id":"XUEKEN2023039","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G713534915","display_name":null,"funder_award_id":"42277113","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G770456615","display_name":null,"funder_award_id":"Funds","funder_id":"https://openalex.org/F4320322769","funder_display_name":"Natural Science Foundation of Jiangsu Province"},{"id":"https://openalex.org/G7742790738","display_name":null,"funder_award_id":"110202101047(LS-07)","funder_id":"https://openalex.org/F4320325433","funder_display_name":"China National Tobacco Corporation"},{"id":"https://openalex.org/G8524574720","display_name":null,"funder_award_id":"XUEKEN2023044","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321605","display_name":"Government of Jiangsu Province","ror":"https://ror.org/004svx814"},{"id":"https://openalex.org/F4320322769","display_name":"Natural Science Foundation of Jiangsu Province","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320325433","display_name":"China National Tobacco Corporation","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4378745253.pdf"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W1835750348","https://openalex.org/W2030717203","https://openalex.org/W2101234009","https://openalex.org/W2112364185","https://openalex.org/W2184652140","https://openalex.org/W2311607323","https://openalex.org/W2475334473","https://openalex.org/W2570535773","https://openalex.org/W2590156219","https://openalex.org/W2736280136","https://openalex.org/W2767318416","https://openalex.org/W2780712416","https://openalex.org/W2793768763","https://openalex.org/W2803509875","https://openalex.org/W2896262061","https://openalex.org/W2898604559","https://openalex.org/W2899818496","https://openalex.org/W2913500366","https://openalex.org/W2918598256","https://openalex.org/W2920083709","https://openalex.org/W2950572599","https://openalex.org/W2961729414","https://openalex.org/W2968201070","https://openalex.org/W3002262829","https://openalex.org/W3004621509","https://openalex.org/W3014345701","https://openalex.org/W3014810983","https://openalex.org/W3023530394","https://openalex.org/W3025472913","https://openalex.org/W3049452180","https://openalex.org/W3081278968","https://openalex.org/W3090491025","https://openalex.org/W3093218166","https://openalex.org/W3099584446","https://openalex.org/W3104030692","https://openalex.org/W3110681500","https://openalex.org/W3112172360","https://openalex.org/W3125850677","https://openalex.org/W3128792544","https://openalex.org/W3132126111","https://openalex.org/W3156669901","https://openalex.org/W3165426002","https://openalex.org/W3184635404","https://openalex.org/W4206405364","https://openalex.org/W4214943162","https://openalex.org/W4225255896","https://openalex.org/W4226175423","https://openalex.org/W4293150093","https://openalex.org/W4296779585","https://openalex.org/W4297138475","https://openalex.org/W4297263351","https://openalex.org/W4315707395","https://openalex.org/W4319787893","https://openalex.org/W6675354045","https://openalex.org/W6698064614","https://openalex.org/W6776633558","https://openalex.org/W6791179192","https://openalex.org/W6849743070"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W4388282505","https://openalex.org/W3198631238","https://openalex.org/W4255657129"],"abstract_inverted_index":{"Pathogen":[0],"detection":[1,17,47],"from":[2],"biological":[3],"and":[4,37,76,84,91],"environmental":[5],"samples":[6],"is":[7,95,118],"important":[8],"for":[9,44,99],"global":[10],"disease":[11],"control.":[12],"Despite":[13],"advances":[14],"in":[15,25],"pathogen":[16,46,86],"using":[18,88],"deep":[19,32,38,112],"learning,":[20],"current":[21],"algorithms":[22],"have":[23],"limitations":[24],"processing":[26],"long":[27],"genomic":[28],"sequences.":[29],"Through":[30],"the":[31,50,59,100,107],"cross-fusion":[33,113],"of":[34,54,103,109],"cross,":[35],"residual":[36],"neural":[39],"networks,":[40],"we":[41],"developed":[42],"DCiPatho":[43,63,80,94],"accurate":[45],"based":[48],"on":[49,81],"integrated":[51],"frequency":[52,108],"features":[53],"3-to-7":[55],"k-mers.":[56],"Compared":[57],"with":[58],"existing":[60],"state-of-the-art":[61],"algorithms,":[62],"can":[64],"be":[65],"used":[66],"to":[67],"accurately":[68],"identify":[69],"distinct":[70],"pathogenic":[71],"bacteria":[72],"infecting":[73],"humans,":[74],"animals":[75],"plants.":[77],"We":[78],"evaluated":[79],"both":[82,89],"learned":[83],"unlearned":[85],"species":[87],"genomics":[90],"metagenomics":[92],"datasets.":[93],"an":[96],"effective":[97],"tool":[98],"genomic-scale":[101],"identification":[102],"pathogens":[104],"by":[105],"integrating":[106],"k-mers":[110],"into":[111],"networks.":[114],"The":[115],"source":[116],"code":[117],"publicly":[119],"available":[120],"at":[121],"https://github.com/LorMeBioAI/DCiPatho.":[122]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":11}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}