{"id":"https://openalex.org/W4378349624","doi":"https://doi.org/10.1093/bib/bbad186","title":"Recent trends in RNA informatics: a review of machine learning and deep learning for RNA secondary structure prediction and RNA drug discovery","display_name":"Recent trends in RNA informatics: a review of machine learning and deep learning for RNA secondary structure prediction and RNA drug discovery","publication_year":2023,"publication_date":"2023-05-25","ids":{"openalex":"https://openalex.org/W4378349624","doi":"https://doi.org/10.1093/bib/bbad186","pmid":"https://pubmed.ncbi.nlm.nih.gov/37232359"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad186","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad186","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad186/50452616/bbad186.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad186/50452616/bbad186.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076175043","display_name":"Kengo Sato","orcid":"https://orcid.org/0000-0001-6744-7390"},"institutions":[{"id":"https://openalex.org/I165522056","display_name":"Tokyo Denki University","ror":"https://ror.org/01pa62v70","country_code":"JP","type":"education","lineage":["https://openalex.org/I165522056"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Kengo Sato","raw_affiliation_strings":["School of System Design and Technology, Tokyo Denki University , 5 Senju Asahi-cho, Adachi-ku, Tokyo 120-8551, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of System Design and Technology, Tokyo Denki University , 5 Senju Asahi-cho, Adachi-ku, Tokyo 120-8551, Japan","institution_ids":["https://openalex.org/I165522056"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025857432","display_name":"Michiaki Hamada","orcid":"https://orcid.org/0000-0001-9466-1034"},"institutions":[{"id":"https://openalex.org/I150744194","display_name":"Waseda University","ror":"https://ror.org/00ntfnx83","country_code":"JP","type":"education","lineage":["https://openalex.org/I150744194"]},{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]},{"id":"https://openalex.org/I80188885","display_name":"Nippon Medical School","ror":"https://ror.org/00krab219","country_code":"JP","type":"education","lineage":["https://openalex.org/I80188885"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Michiaki Hamada","raw_affiliation_strings":["Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL) , National Institute of Advanced Industrial Science and Technology (AIST) , 3-4-1, Okubo, Shinjuku-ku, Tokyo 169-8555, Japan","Department of Electrical Engineering and Bioscience , Faculty of Science and Engineering, , 55N-06-10, 3-4-1, Okubo, Shinjuku-ku, Tokyo 169-8555, Japan","Graduate School of Medicine, Nippon Medical School , 1-1-5, Sendagi, Bunkyo-ku, Tokyo 113-8602, Japan","Waseda University , Faculty of Science and Engineering, , 55N-06-10, 3-4-1, Okubo, Shinjuku-ku, Tokyo 169-8555, Japan","Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL) , National Institute of Advanced Industrial Science and Technology (AIST), 3-4-1, Okubo, Shinjuku-ku, Tokyo 169-8555, Japan","Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University, 55N-06-10, 3-4-1, Okubo, Shinjuku-ku, Tokyo 169-8555, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL) , National Institute of Advanced Industrial Science and Technology (AIST) , 3-4-1, Okubo, Shinjuku-ku, Tokyo 169-8555, Japan","institution_ids":["https://openalex.org/I73613424"]},{"raw_affiliation_string":"Department of Electrical Engineering and Bioscience , Faculty of Science and Engineering, , 55N-06-10, 3-4-1, Okubo, Shinjuku-ku, Tokyo 169-8555, Japan","institution_ids":["https://openalex.org/I150744194"]},{"raw_affiliation_string":"Graduate School of Medicine, Nippon Medical School , 1-1-5, Sendagi, Bunkyo-ku, Tokyo 113-8602, Japan","institution_ids":["https://openalex.org/I80188885"]},{"raw_affiliation_string":"Waseda University , Faculty of Science and Engineering, , 55N-06-10, 3-4-1, Okubo, Shinjuku-ku, Tokyo 169-8555, Japan","institution_ids":["https://openalex.org/I150744194"]},{"raw_affiliation_string":"Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL) , National Institute of Advanced Industrial Science and Technology (AIST), 3-4-1, Okubo, Shinjuku-ku, Tokyo 169-8555, Japan","institution_ids":["https://openalex.org/I73613424"]},{"raw_affiliation_string":"Department of Electrical Engineering and Bioscience, Faculty of Science and Engineering, Waseda University, 55N-06-10, 3-4-1, Okubo, Shinjuku-ku, Tokyo 169-8555, Japan","institution_ids":["https://openalex.org/I150744194"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5076175043"],"corresponding_institution_ids":["https://openalex.org/I165522056"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":12.6471,"has_fulltext":true,"cited_by_count":87,"citation_normalized_percentile":{"value":0.99153881,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"24","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.6469907760620117},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6259585022926331},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.6224353313446045},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.562903106212616},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5375596880912781},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5352749228477478},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5190877914428711},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5009088516235352},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4041043519973755},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2664783000946045},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2030869722366333},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12624388933181763},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.12092709541320801},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09506151080131531}],"concepts":[{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.6469907760620117},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6259585022926331},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.6224353313446045},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.562903106212616},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5375596880912781},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5352749228477478},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5190877914428711},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5009088516235352},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4041043519973755},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2664783000946045},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2030869722366333},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12624388933181763},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.12092709541320801},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09506151080131531},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D052157","descriptor_name":"Aptamers, Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D052157","descriptor_name":"Aptamers, Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D052157","descriptor_name":"Aptamers, Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D052157","descriptor_name":"Aptamers, Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbad186","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad186","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad186/50452616/bbad186.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37232359","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37232359","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10359090","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10359090","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10359090/pdf/bbad186.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbad186","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad186","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbad186/50452616/bbad186.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1408967043","display_name":null,"funder_award_id":"JP22ama121055","funder_id":"https://openalex.org/F4320311405","funder_display_name":"Japan Agency for Medical Research and Development"},{"id":"https://openalex.org/G2576085165","display_name":null,"funder_award_id":"CREST","funder_id":"https://openalex.org/F4320311405","funder_display_name":"Japan Agency for Medical Research and Development"},{"id":"https://openalex.org/G3389560584","display_name":"\u4eba\u5de5\u77e5\u80fd\u6280\u8853\u3092\u7528\u3044\u305f\u9769\u65b0\u7684\u30a2\u30d7\u30bf\u30de\u30fc\u5275\u85ac\u30b7\u30b9\u30c6\u30e0\u306e\u958b\u767a","funder_award_id":"JPMJCR1881","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G342479731","display_name":null,"funder_award_id":"22H04925","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G5111648280","display_name":null,"funder_award_id":"22H04925","funder_id":"https://openalex.org/F4320311405","funder_display_name":"Japan Agency for Medical Research and Development"},{"id":"https://openalex.org/G5303493250","display_name":null,"funder_award_id":"JPMJCR21F1","funder_id":"https://openalex.org/F4320338075","funder_display_name":"Core Research for Evolutional Science and Technology"},{"id":"https://openalex.org/G5348053622","display_name":null,"funder_award_id":"21479280","funder_id":"https://openalex.org/F4320311405","funder_display_name":"Japan Agency for Medical Research and Development"},{"id":"https://openalex.org/G547548319","display_name":null,"funder_award_id":"JPMJCR1881","funder_id":"https://openalex.org/F4320338075","funder_display_name":"Core Research for Evolutional Science and Technology"},{"id":"https://openalex.org/G6698396052","display_name":"AI\u30a2\u30d7\u30bf\u30de\u30fc\u5275\u85ac\u30d7\u30ed\u30b8\u30a7\u30af\u30c8","funder_award_id":"JPMJCR21F1","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G6718509927","display_name":null,"funder_award_id":"CREST","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G6776636297","display_name":null,"funder_award_id":"17K20032","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G6931467858","display_name":null,"funder_award_id":"22H03689","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G7669804585","display_name":null,"funder_award_id":"20H00624","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320311405","display_name":"Japan Agency for Medical Research and Development","ror":"https://ror.org/004rtk039"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320334789","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19"},{"id":"https://openalex.org/F4320338075","display_name":"Core Research for Evolutional Science and Technology","ror":"https://ror.org/00097mb19"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4378349624.pdf","grobid_xml":"https://content.openalex.org/works/W4378349624.grobid-xml"},"referenced_works_count":161,"referenced_works":["https://openalex.org/W51469642","https://openalex.org/W1605441808","https://openalex.org/W1861164398","https://openalex.org/W1963706689","https://openalex.org/W1974900622","https://openalex.org/W1981576666","https://openalex.org/W1984675364","https://openalex.org/W1988884185","https://openalex.org/W2000191287","https://openalex.org/W2003147263","https://openalex.org/W2004945910","https://openalex.org/W2009818318","https://openalex.org/W2011368877","https://openalex.org/W2016614259","https://openalex.org/W2020546070","https://openalex.org/W2023206235","https://openalex.org/W2025763720","https://openalex.org/W2025980739","https://openalex.org/W2026181790","https://openalex.org/W2031352989","https://openalex.org/W2034393805","https://openalex.org/W2042881722","https://openalex.org/W2045895660","https://openalex.org/W2051713039","https://openalex.org/W2052080622","https://openalex.org/W2057590917","https://openalex.org/W2064580019","https://openalex.org/W2071883352","https://openalex.org/W2076091642","https://openalex.org/W2076756368","https://openalex.org/W2086509077","https://openalex.org/W2086561953","https://openalex.org/W2098553089","https://openalex.org/W2098571862","https://openalex.org/W2101497682","https://openalex.org/W2102017611","https://openalex.org/W2102225325","https://openalex.org/W2103250001","https://openalex.org/W2104141342","https://openalex.org/W2108230379","https://openalex.org/W2109297587","https://openalex.org/W2109638684","https://openalex.org/W2111272410","https://openalex.org/W2113816707","https://openalex.org/W2114783261","https://openalex.org/W2115275409","https://openalex.org/W2123241418","https://openalex.org/W2127322768","https://openalex.org/W2127375279","https://openalex.org/W2130479394","https://openalex.org/W2130682154","https://openalex.org/W2131054067","https://openalex.org/W2134489577","https://openalex.org/W2137640371","https://openalex.org/W2139993947","https://openalex.org/W2140302584","https://openalex.org/W2141152740","https://openalex.org/W2141157874","https://openalex.org/W2142038007","https://openalex.org/W2142056356","https://openalex.org/W2143407915","https://openalex.org/W2146721220","https://openalex.org/W2148599336","https://openalex.org/W2156244955","https://openalex.org/W2158267024","https://openalex.org/W2158915909","https://openalex.org/W2159117141","https://openalex.org/W2162224067","https://openalex.org/W2167377315","https://openalex.org/W2167673850","https://openalex.org/W2169185001","https://openalex.org/W2170157200","https://openalex.org/W2339718724","https://openalex.org/W2400250419","https://openalex.org/W2495359280","https://openalex.org/W2536860838","https://openalex.org/W2564720591","https://openalex.org/W2590034108","https://openalex.org/W2602856279","https://openalex.org/W2759571676","https://openalex.org/W2761947905","https://openalex.org/W2766234835","https://openalex.org/W2898210859","https://openalex.org/W2898649315","https://openalex.org/W2944704300","https://openalex.org/W2946035471","https://openalex.org/W2951298881","https://openalex.org/W2954102902","https://openalex.org/W2955231772","https://openalex.org/W2966178198","https://openalex.org/W2990138404","https://openalex.org/W2990262863","https://openalex.org/W2990528340","https://openalex.org/W2999955472","https://openalex.org/W3008092300","https://openalex.org/W3027546635","https://openalex.org/W3035476925","https://openalex.org/W3037200131","https://openalex.org/W3041118201","https://openalex.org/W3085874984","https://openalex.org/W3095979265","https://openalex.org/W3099560547","https://openalex.org/W3100348855","https://openalex.org/W3115880421","https://openalex.org/W3118798023","https://openalex.org/W3119808766","https://openalex.org/W3126773939","https://openalex.org/W3127634170","https://openalex.org/W3127926106","https://openalex.org/W3133458480","https://openalex.org/W3138479300","https://openalex.org/W3156114568","https://openalex.org/W3156401343","https://openalex.org/W3164412373","https://openalex.org/W3171835979","https://openalex.org/W3177828909","https://openalex.org/W3184615727","https://openalex.org/W3204096889","https://openalex.org/W3208650284","https://openalex.org/W3212533323","https://openalex.org/W4210357271","https://openalex.org/W4211132315","https://openalex.org/W4213095938","https://openalex.org/W4220991830","https://openalex.org/W4221089965","https://openalex.org/W4225917625","https://openalex.org/W4251866352","https://openalex.org/W4281786804","https://openalex.org/W4283447041","https://openalex.org/W4283787644","https://openalex.org/W4283832815","https://openalex.org/W4285013647","https://openalex.org/W4285677862","https://openalex.org/W4286721853","https://openalex.org/W4290546063","https://openalex.org/W4290672950","https://openalex.org/W4292840778","https://openalex.org/W4295532582","https://openalex.org/W4297990198","https://openalex.org/W4300861274","https://openalex.org/W4308101956","https://openalex.org/W4309788336","https://openalex.org/W4310470802","https://openalex.org/W4311486625","https://openalex.org/W4313315369","https://openalex.org/W4313339983","https://openalex.org/W4313488537","https://openalex.org/W4317859954","https://openalex.org/W4366082790","https://openalex.org/W4367681391","https://openalex.org/W4383216587","https://openalex.org/W4388520896","https://openalex.org/W6636160900","https://openalex.org/W6771520483","https://openalex.org/W6778833358","https://openalex.org/W6788107056","https://openalex.org/W6807289553","https://openalex.org/W6839309144","https://openalex.org/W6840306137","https://openalex.org/W6841216957","https://openalex.org/W6847396639"],"related_works":["https://openalex.org/W4375867731","https://openalex.org/W2611989081","https://openalex.org/W2480711475","https://openalex.org/W2731899572","https://openalex.org/W2147993839","https://openalex.org/W1988429360","https://openalex.org/W4385457841","https://openalex.org/W2581348958","https://openalex.org/W4367048159","https://openalex.org/W962838231"],"abstract_inverted_index":{"Computational":[0],"analysis":[1,35,76,113],"of":[2,12,19,25,52,74,97,114,126,145,173],"RNA":[3,13,33,53,79,98,127,130,146,149,152,174],"sequences":[4],"constitutes":[5],"a":[6,91],"crucial":[7],"step":[8],"in":[9,16,40,64,111,123,142,170],"the":[10,20,23,50,72,95,112,124,143,171],"field":[11,96,172],"biology.":[14,99],"As":[15],"other":[17],"domains":[18],"life":[21],"sciences,":[22],"incorporation":[24],"artificial":[26,101],"intelligence":[27,102],"and":[28,103,122,151,160,163],"machine":[29,57,104,156],"learning":[30,105,159],"techniques":[31],"into":[32],"sequence":[34,75],"has":[36,86],"gained":[37],"significant":[38],"traction":[39],"recent":[41,65,140],"years.":[42],"Historically,":[43],"thermodynamics-based":[44],"methods":[45],"were":[46],"widely":[47],"employed":[48],"for":[49,118],"prediction":[51,144],"secondary":[54,80,147],"structures;":[55],"however,":[56],"learning-based":[58],"approaches":[59],"have":[60],"demonstrated":[61],"remarkable":[62],"advancements":[63],"years,":[66],"enabling":[67],"more":[68],"accurate":[69],"predictions.":[70],"Consequently,":[71],"precision":[73],"pertaining":[77],"to":[78,94],"structures,":[81],"such":[82],"as":[83,132],"RNA-protein":[84],"interactions,":[85],"also":[87,107,165],"been":[88],"enhanced,":[89],"making":[90],"substantial":[92],"contribution":[93],"Additionally,":[100],"are":[106],"introducing":[108],"technical":[109],"innovations":[110],"RNA-small":[115],"molecule":[116],"interactions":[117],"RNA-targeted":[119],"drug":[120,153],"discovery":[121,154],"design":[125],"aptamers,":[128],"where":[129],"serves":[131],"its":[133],"own":[134],"ligand.":[135],"This":[136],"review":[137],"will":[138,164],"highlight":[139],"trends":[141],"structure,":[148],"aptamers":[150],"using":[155],"learning,":[157],"deep":[158],"related":[161],"technologies,":[162],"discuss":[166],"potential":[167],"future":[168],"avenues":[169],"informatics.":[175]},"counts_by_year":[{"year":2026,"cited_by_count":13},{"year":2025,"cited_by_count":41},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":7}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
