{"id":"https://openalex.org/W4368358783","doi":"https://doi.org/10.1093/bib/bbad166","title":"InferLoop: leveraging single-cell chromatin accessibility for the signal of chromatin loop","display_name":"InferLoop: leveraging single-cell chromatin accessibility for the signal of chromatin loop","publication_year":2023,"publication_date":"2023-05-01","ids":{"openalex":"https://openalex.org/W4368358783","doi":"https://doi.org/10.1093/bib/bbad166","pmid":"https://pubmed.ncbi.nlm.nih.gov/37139553"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad166","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad166","pdf_url":"https://academic.oup.com/bib/article-pdf/24/3/bbad166/50410218/bbad166.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/24/3/bbad166/50410218/bbad166.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075642803","display_name":"Feng Zhang","orcid":"https://orcid.org/0000-0003-3447-897X"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210123333","display_name":"Ministry of Education","ror":"https://ror.org/036nq5137","country_code":"TH","type":"government","lineage":["https://openalex.org/I4210123333"]}],"countries":["CN","TH"],"is_corresponding":true,"raw_author_name":"Feng Zhang","raw_affiliation_strings":["Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","Department of Histoembryology, Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I4210123333"]},{"raw_affiliation_string":"Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Department of Histoembryology, Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047055356","display_name":"Huiyuan Jiao","orcid":null},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210123333","display_name":"Ministry of Education","ror":"https://ror.org/036nq5137","country_code":"TH","type":"government","lineage":["https://openalex.org/I4210123333"]}],"countries":["CN","TH"],"is_corresponding":false,"raw_author_name":"Huiyuan Jiao","raw_affiliation_strings":["Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","Department of Histoembryology, Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I4210123333"]},{"raw_affiliation_string":"Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Department of Histoembryology, Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039242210","display_name":"Yihao Wang","orcid":"https://orcid.org/0000-0002-6185-3483"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210097066","display_name":"Shanghai Ninth People's Hospital","ror":"https://ror.org/010826a91","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210097066"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yihao Wang","raw_affiliation_strings":["Department of Ophthalmology , Ninth People\u2019s Hospital, , Shanghai 200025, China","Institute of Translational Medicine , National Facility for Translational Medicine, , Shanghai 201109, China","Shanghai Jiao Tong University , National Facility for Translational Medicine, , Shanghai 201109, China","Shanghai Jiao Tong University School of Medicine , Ninth People\u2019s Hospital, , Shanghai 200025, China","Shanghai Key Laboratory of Orbital Diseases and Ocular Oncology , Shanghai 200025, China","Department of Ophthalmology, Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China","Institute of Translational Medicine, National Facility for Translational Medicine, Shanghai Jiao Tong University, Shanghai 201109, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Ophthalmology , Ninth People\u2019s Hospital, , Shanghai 200025, China","institution_ids":["https://openalex.org/I4210097066"]},{"raw_affiliation_string":"Institute of Translational Medicine , National Facility for Translational Medicine, , Shanghai 201109, China","institution_ids":[]},{"raw_affiliation_string":"Shanghai Jiao Tong University , National Facility for Translational Medicine, , Shanghai 201109, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai Jiao Tong University School of Medicine , Ninth People\u2019s Hospital, , Shanghai 200025, China","institution_ids":["https://openalex.org/I4210097066"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Orbital Diseases and Ocular Oncology , Shanghai 200025, China","institution_ids":[]},{"raw_affiliation_string":"Department of Ophthalmology, Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210097066"]},{"raw_affiliation_string":"Institute of Translational Medicine, National Facility for Translational Medicine, Shanghai Jiao Tong University, Shanghai 201109, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100350382","display_name":"Yang Chen","orcid":"https://orcid.org/0000-0001-9406-8273"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210123333","display_name":"Ministry of Education","ror":"https://ror.org/036nq5137","country_code":"TH","type":"government","lineage":["https://openalex.org/I4210123333"]}],"countries":["CN","TH"],"is_corresponding":false,"raw_author_name":"Chen Yang","raw_affiliation_strings":["Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","Department of Histoembryology, Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I4210123333"]},{"raw_affiliation_string":"Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Department of Histoembryology, Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101772634","display_name":"Linying Li","orcid":"https://orcid.org/0000-0002-7358-855X"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210123333","display_name":"Ministry of Education","ror":"https://ror.org/036nq5137","country_code":"TH","type":"government","lineage":["https://openalex.org/I4210123333"]},{"id":"https://openalex.org/I4210159420","display_name":"Shanghai Children's Hospital","ror":"https://ror.org/05pea1m70","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159420"]}],"countries":["CN","TH"],"is_corresponding":true,"raw_author_name":"Linying Li","raw_affiliation_strings":["Department of Central Laboratory , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","Shanghai Jiao Tong University , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","Department of Central Laboratory, Shanghai Children's Hospital, School of medicine, Shanghai Jiao Tong University, Shanghai 200062, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Central Laboratory , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","institution_ids":["https://openalex.org/I4210159420"]},{"raw_affiliation_string":"Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I4210123333"]},{"raw_affiliation_string":"Shanghai Jiao Tong University , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210159420"]},{"raw_affiliation_string":"Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Department of Central Laboratory, Shanghai Children's Hospital, School of medicine, Shanghai Jiao Tong University, Shanghai 200062, China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210159420"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5143820237","display_name":"Linying Li","orcid":null},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210123333","display_name":"Ministry of Education","ror":"https://ror.org/036nq5137","country_code":"TH","type":"government","lineage":["https://openalex.org/I4210123333"]},{"id":"https://openalex.org/I4210159420","display_name":"Shanghai Children's Hospital","ror":"https://ror.org/05pea1m70","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159420"]}],"countries":["CN","TH"],"is_corresponding":false,"raw_author_name":"Linying Li","raw_affiliation_strings":["Department of Central Laboratory , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","Shanghai Jiao Tong University , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","Department of Histoembryology, Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Central Laboratory , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","institution_ids":["https://openalex.org/I4210159420"]},{"raw_affiliation_string":"Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I4210123333"]},{"raw_affiliation_string":"Shanghai Jiao Tong University , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210159420"]},{"raw_affiliation_string":"Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Department of Histoembryology, Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100372799","display_name":"Zhiming Wang","orcid":"https://orcid.org/0000-0002-3047-3285"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210123333","display_name":"Ministry of Education","ror":"https://ror.org/036nq5137","country_code":"TH","type":"government","lineage":["https://openalex.org/I4210123333"]}],"countries":["CN","TH"],"is_corresponding":false,"raw_author_name":"Zhiming Wang","raw_affiliation_strings":["Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","Department of Histoembryology, Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I4210123333"]},{"raw_affiliation_string":"Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Department of Histoembryology, Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071893940","display_name":"Ran Tong","orcid":null},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210123333","display_name":"Ministry of Education","ror":"https://ror.org/036nq5137","country_code":"TH","type":"government","lineage":["https://openalex.org/I4210123333"]},{"id":"https://openalex.org/I4210159420","display_name":"Shanghai Children's Hospital","ror":"https://ror.org/05pea1m70","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159420"]}],"countries":["CN","TH"],"is_corresponding":false,"raw_author_name":"Ran Tong","raw_affiliation_strings":["Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","Department of Central Laboratory, Shanghai Children's Hospital, School of medicine, Shanghai Jiao Tong University, Shanghai 200062, China","Shanghai Jiao Tong University , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I4210123333"]},{"raw_affiliation_string":"Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Department of Central Laboratory, Shanghai Children's Hospital, School of medicine, Shanghai Jiao Tong University, Shanghai 200062, China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210159420"]},{"raw_affiliation_string":"Shanghai Jiao Tong University , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210159420"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5143759860","display_name":"Junmei Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210097066","display_name":"Shanghai Ninth People's Hospital","ror":"https://ror.org/010826a91","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210097066"]},{"id":"https://openalex.org/I4210159420","display_name":"Shanghai Children's Hospital","ror":"https://ror.org/05pea1m70","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159420"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junmei Zhou","raw_affiliation_strings":["Department of Central Laboratory , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","Shanghai Jiao Tong University , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","Department of Ophthalmology, Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China","Institute of Translational Medicine , National Facility for Translational Medicine, , Shanghai 201109, China","Institute of Translational Medicine, National Facility for Translational Medicine, Shanghai Jiao Tong University, Shanghai 201109, China","Shanghai Jiao Tong University , National Facility for Translational Medicine, , Shanghai 201109, China","Shanghai Key Laboratory of Orbital Diseases and Ocular Oncology , Shanghai 200025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Central Laboratory , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","institution_ids":["https://openalex.org/I4210159420"]},{"raw_affiliation_string":"Shanghai Jiao Tong University , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210159420"]},{"raw_affiliation_string":"Department of Ophthalmology, Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210097066"]},{"raw_affiliation_string":"Institute of Translational Medicine , National Facility for Translational Medicine, , Shanghai 201109, China","institution_ids":[]},{"raw_affiliation_string":"Institute of Translational Medicine, National Facility for Translational Medicine, Shanghai Jiao Tong University, Shanghai 201109, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai Jiao Tong University , National Facility for Translational Medicine, , Shanghai 201109, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Orbital Diseases and Ocular Oncology , Shanghai 200025, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085668020","display_name":"Jianfeng Shen","orcid":"https://orcid.org/0000-0001-9779-6225"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210097066","display_name":"Shanghai Ninth People's Hospital","ror":"https://ror.org/010826a91","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210097066"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianfeng Shen","raw_affiliation_strings":["Department of Ophthalmology , Ninth People\u2019s Hospital, , Shanghai 200025, China","Institute of Translational Medicine , National Facility for Translational Medicine, , Shanghai 201109, China","Shanghai Jiao Tong University , National Facility for Translational Medicine, , Shanghai 201109, China","Shanghai Jiao Tong University School of Medicine , Ninth People\u2019s Hospital, , Shanghai 200025, China","Shanghai Key Laboratory of Orbital Diseases and Ocular Oncology , Shanghai 200025, China","Department of Histoembryology, Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China","Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Ophthalmology , Ninth People\u2019s Hospital, , Shanghai 200025, China","institution_ids":["https://openalex.org/I4210097066"]},{"raw_affiliation_string":"Institute of Translational Medicine , National Facility for Translational Medicine, , Shanghai 201109, China","institution_ids":[]},{"raw_affiliation_string":"Shanghai Jiao Tong University , National Facility for Translational Medicine, , Shanghai 201109, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai Jiao Tong University School of Medicine , Ninth People\u2019s Hospital, , Shanghai 200025, China","institution_ids":["https://openalex.org/I4210097066"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Orbital Diseases and Ocular Oncology , Shanghai 200025, China","institution_ids":[]},{"raw_affiliation_string":"Department of Histoembryology, Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100772631","display_name":"Lingjie Li","orcid":"https://orcid.org/0000-0003-4348-516X"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210123333","display_name":"Ministry of Education","ror":"https://ror.org/036nq5137","country_code":"TH","type":"government","lineage":["https://openalex.org/I4210123333"]},{"id":"https://openalex.org/I4210159420","display_name":"Shanghai Children's Hospital","ror":"https://ror.org/05pea1m70","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159420"]}],"countries":["CN","TH"],"is_corresponding":true,"raw_author_name":"Lingjie Li","raw_affiliation_strings":["Department of Central Laboratory , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","Shanghai Jiao Tong University , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Central Laboratory , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","institution_ids":["https://openalex.org/I4210159420"]},{"raw_affiliation_string":"Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I4210123333"]},{"raw_affiliation_string":"Shanghai Jiao Tong University , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210159420"]},{"raw_affiliation_string":"Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100772631","display_name":"Lingjie Li","orcid":"https://orcid.org/0000-0003-4348-516X"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210123333","display_name":"Ministry of Education","ror":"https://ror.org/036nq5137","country_code":"TH","type":"government","lineage":["https://openalex.org/I4210123333"]},{"id":"https://openalex.org/I4210159420","display_name":"Shanghai Children's Hospital","ror":"https://ror.org/05pea1m70","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159420"]}],"countries":["CN","TH"],"is_corresponding":false,"raw_author_name":"Lingjie Li","raw_affiliation_strings":["Department of Central Laboratory , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","Shanghai Jiao Tong University , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Central Laboratory , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","institution_ids":["https://openalex.org/I4210159420"]},{"raw_affiliation_string":"Department of Histoembryology , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I4210123333"]},{"raw_affiliation_string":"Shanghai Jiao Tong University , Shanghai Children's Hospital, School of medicine, , Shanghai 200062, China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210159420"]},{"raw_affiliation_string":"Shanghai Jiao Tong University School of Medicine , Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, , Shanghai 200025, China","institution_ids":["https://openalex.org/I183067930"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5075642803","https://openalex.org/A5100772631","https://openalex.org/A5101772634"],"corresponding_institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210123333","https://openalex.org/I4210159420"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":{"value":3885,"currency":"USD","value_usd":3885},"fwci":0.3817,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.55535464,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"24","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.8193715810775757},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6668275594711304},{"id":"https://openalex.org/keywords/intergenic-region","display_name":"Intergenic region","score":0.5905573964118958},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5447484254837036},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5428069233894348},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36423081159591675},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3338342308998108},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.33355599641799927},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2998530864715576},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22153320908546448},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18835851550102234}],"concepts":[{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.8193715810775757},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6668275594711304},{"id":"https://openalex.org/C195139083","wikidata":"https://www.wikidata.org/wiki/Q3463539","display_name":"Intergenic region","level":4,"score":0.5905573964118958},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5447484254837036},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5428069233894348},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36423081159591675},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3338342308998108},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.33355599641799927},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2998530864715576},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22153320908546448},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18835851550102234}],"mesh":[{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbad166","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad166","pdf_url":"https://academic.oup.com/bib/article-pdf/24/3/bbad166/50410218/bbad166.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37139553","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37139553","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10199765","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10199765","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10199765/pdf/bbad166.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbad166","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad166","pdf_url":"https://academic.oup.com/bib/article-pdf/24/3/bbad166/50410218/bbad166.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2103857195","display_name":null,"funder_award_id":"81972667","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3308574116","display_name":null,"funder_award_id":"32100516","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4050426226","display_name":null,"funder_award_id":"2021YFC2701103","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5170525688","display_name":null,"funder_award_id":"32070867","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6178393015","display_name":null,"funder_award_id":"2021YFA1100400","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G6558006138","display_name":"TFAP2C\u8c03\u63a7\u4f53\u8868\u5916\u80da\u5c42\u5e72\u7ec6\u80de\u5206\u5316\u6f5c\u80fd\u7684\u8868\u89c2\u9057\u4f20\u5b66\u673a\u5236","funder_award_id":"21ZR1435900","funder_id":"https://openalex.org/F4320309612","funder_display_name":"Natural Science Foundation of Shanghai"}],"funders":[{"id":"https://openalex.org/F4320309612","display_name":"Natural Science Foundation of Shanghai","ror":null},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322999","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4368358783.pdf","grobid_xml":"https://content.openalex.org/works/W4368358783.grobid-xml"},"referenced_works_count":71,"referenced_works":["https://openalex.org/W1975914956","https://openalex.org/W1985621639","https://openalex.org/W2023020030","https://openalex.org/W2041155293","https://openalex.org/W2089823661","https://openalex.org/W2090037139","https://openalex.org/W2102619694","https://openalex.org/W2132555912","https://openalex.org/W2166783472","https://openalex.org/W2171808845","https://openalex.org/W2191292005","https://openalex.org/W2196905301","https://openalex.org/W2305116528","https://openalex.org/W2406250479","https://openalex.org/W2508622936","https://openalex.org/W2523285811","https://openalex.org/W2734464417","https://openalex.org/W2740163174","https://openalex.org/W2750049634","https://openalex.org/W2765567136","https://openalex.org/W2887694579","https://openalex.org/W2889474202","https://openalex.org/W2901303766","https://openalex.org/W2933433092","https://openalex.org/W2936068176","https://openalex.org/W2945220048","https://openalex.org/W2946016273","https://openalex.org/W2950655801","https://openalex.org/W2951322997","https://openalex.org/W2951506174","https://openalex.org/W2952664869","https://openalex.org/W2960979937","https://openalex.org/W2965985232","https://openalex.org/W2972380686","https://openalex.org/W2977083349","https://openalex.org/W2979670855","https://openalex.org/W2979911343","https://openalex.org/W3099179344","https://openalex.org/W3111554464","https://openalex.org/W3112390879","https://openalex.org/W3124946892","https://openalex.org/W3126430294","https://openalex.org/W3126563441","https://openalex.org/W3127451872","https://openalex.org/W3131634425","https://openalex.org/W3152578692","https://openalex.org/W3156830838","https://openalex.org/W3158393751","https://openalex.org/W3164692211","https://openalex.org/W3183522384","https://openalex.org/W3206184033","https://openalex.org/W3210860076","https://openalex.org/W3213694110","https://openalex.org/W3214158901","https://openalex.org/W4211255280","https://openalex.org/W4223992851","https://openalex.org/W4226185665","https://openalex.org/W4226244475","https://openalex.org/W4229448159","https://openalex.org/W4290973104","https://openalex.org/W4292074958","https://openalex.org/W4292121951","https://openalex.org/W4296488518","https://openalex.org/W4305013698","https://openalex.org/W4310438905","https://openalex.org/W6734855276","https://openalex.org/W6768092213","https://openalex.org/W6789145472","https://openalex.org/W6789821668","https://openalex.org/W6811639996","https://openalex.org/W6846665952"],"related_works":["https://openalex.org/W1987704141","https://openalex.org/W2937595795","https://openalex.org/W2784001400","https://openalex.org/W3151497773","https://openalex.org/W2152861454","https://openalex.org/W3004891660","https://openalex.org/W2030987331","https://openalex.org/W2571285940","https://openalex.org/W2108267719","https://openalex.org/W2952365809"],"abstract_inverted_index":{"Deciphering":[0],"cell-type-specific":[1,85],"3D":[2,120],"structures":[3],"of":[4,19,29,65,79,84,90,97,104,124,135,168,177],"chromatin":[5,20,24,174],"is":[6,60,181],"challenging.":[7],"Here,":[8],"we":[9,73],"present":[10],"InferLoop,":[11,80],"a":[12,55],"novel":[13],"method":[14],"for":[15,45,51],"inferring":[16],"the":[17,63,66,82,88,95,118,131,143,147,154,172],"strength":[18],"interaction":[21],"using":[22,54,117,171],"single-cell":[23,119,132],"accessibility":[25,49,175],"data.":[26],"The":[27,100],"workflow":[28],"InferLoop":[30,105,160,180],"is,":[31],"first,":[32],"to":[33,62,164],"conduct":[34],"signal":[35],"enhancement":[36],"by":[37,116],"grouping":[38],"nearby":[39],"cells":[40],"into":[41],"bins,":[42],"and":[43,94,102,128,138,142],"then,":[44],"each":[46],"bin,":[47],"leverage":[48],"signals":[50,53,167],"loop":[52,86,166],"newly":[56],"constructed":[57],"metric":[58],"that":[59],"similar":[61],"perturbation":[64],"Pearson":[67],"correlation":[68],"coefficient.":[69],"In":[70,158],"this":[71],"study,":[72],"have":[74],"described":[75],"three":[76,111],"application":[77],"scenarios":[78,112],"including":[81],"inference":[83],"signals,":[87],"prediction":[89],"gene":[91],"expression":[92],"levels":[93],"interpretation":[96],"intergenic":[98,144],"loci.":[99],"effectiveness":[101],"superiority":[103],"over":[106],"other":[107],"methods":[108],"in":[109,146],"those":[110],"are":[113],"rigorously":[114],"validated":[115],"genome":[121],"structure":[122],"data":[123,134,176],"human":[125,129,136],"brain":[126,140],"cortex":[127],"blood,":[130],"multi-omics":[133],"blood":[137],"mouse":[139,178],"cortex,":[141],"loci":[145],"GWAS":[148],"Catalog":[149],"database":[150],"as":[151,153],"well":[152],"GTEx":[155],"database,":[156],"respectively.":[157],"addition,":[159],"can":[161],"be":[162],"applied":[163],"predict":[165],"individual":[169],"spots":[170],"spatial":[173],"embryo.":[179],"available":[182],"at":[183],"https://github.com/jumphone/inferloop.":[184]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}
