{"id":"https://openalex.org/W4368361817","doi":"https://doi.org/10.1093/bib/bbad165","title":"LPAD: using network construction and label propagation to detect topologically associating domains from Hi-C data","display_name":"LPAD: using network construction and label propagation to detect topologically associating domains from Hi-C data","publication_year":2023,"publication_date":"2023-05-01","ids":{"openalex":"https://openalex.org/W4368361817","doi":"https://doi.org/10.1093/bib/bbad165","pmid":"https://pubmed.ncbi.nlm.nih.gov/37139561"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad165","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad165","pdf_url":"https://academic.oup.com/bib/article-pdf/24/3/bbad165/50410228/bbad165.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/3/bbad165/50410228/bbad165.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100414626","display_name":"Jian Liu","orcid":"https://orcid.org/0000-0001-7732-1505"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jian Liu","raw_affiliation_strings":["College of Computer Science, Nankai University , Tianjin 300071 , China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science, Nankai University , Tianjin 300071 , China","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050254080","display_name":"Pingjing Li","orcid":null},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pingjing Li","raw_affiliation_strings":["College of Computer Science, Nankai University , Tianjin 300071 , China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science, Nankai University , Tianjin 300071 , China","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101920535","display_name":"Jialiang Sun","orcid":"https://orcid.org/0000-0003-1898-9593"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jialiang Sun","raw_affiliation_strings":["Centre for Bioinformatics and Intelligent Medicine, Nankai University , Tianjin 300071 , China","College of Computer Science, Nankai University , Tianjin 300071 , China"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics and Intelligent Medicine, Nankai University , Tianjin 300071 , China","institution_ids":["https://openalex.org/I205237279"]},{"raw_affiliation_string":"College of Computer Science, Nankai University , Tianjin 300071 , China","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101554564","display_name":"Jun Guo","orcid":"https://orcid.org/0000-0003-2643-6331"},"institutions":[{"id":"https://openalex.org/I9224756","display_name":"Northeastern University","ror":"https://ror.org/03awzbc87","country_code":"CN","type":"education","lineage":["https://openalex.org/I9224756"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jun Guo","raw_affiliation_strings":["College of Software, Northeastern University , Shenyang 110819 , China"],"affiliations":[{"raw_affiliation_string":"College of Software, Northeastern University , Shenyang 110819 , China","institution_ids":["https://openalex.org/I9224756"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100414626","https://openalex.org/A5101554564"],"corresponding_institution_ids":["https://openalex.org/I205237279","https://openalex.org/I9224756"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.0658,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.76972095,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"24","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromosome-conformation-capture","display_name":"Chromosome conformation capture","score":0.8172253370285034},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6407192945480347},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5755164623260498},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5720484256744385},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5422976016998291},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.5346974730491638},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5125155448913574},{"id":"https://openalex.org/keywords/chromatin-immunoprecipitation","display_name":"Chromatin immunoprecipitation","score":0.5088043808937073},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.45574474334716797},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.4518931210041046},{"id":"https://openalex.org/keywords/distance-matrix","display_name":"Distance matrix","score":0.4387199282646179},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3758648633956909},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.3479158878326416},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3189954161643982},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29512259364128113},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2215932309627533},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.21118730306625366},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.1726938784122467},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1725059449672699},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1446598768234253},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1316133439540863},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.09214633703231812},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.09155720472335815}],"concepts":[{"id":"https://openalex.org/C93946551","wikidata":"https://www.wikidata.org/wiki/Q5113914","display_name":"Chromosome conformation capture","level":5,"score":0.8172253370285034},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6407192945480347},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5755164623260498},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5720484256744385},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5422976016998291},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.5346974730491638},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5125155448913574},{"id":"https://openalex.org/C134320426","wikidata":"https://www.wikidata.org/wiki/Q901026","display_name":"Chromatin immunoprecipitation","level":5,"score":0.5088043808937073},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.45574474334716797},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.4518931210041046},{"id":"https://openalex.org/C111208986","wikidata":"https://www.wikidata.org/wiki/Q901698","display_name":"Distance matrix","level":2,"score":0.4387199282646179},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3758648633956909},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.3479158878326416},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3189954161643982},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29512259364128113},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2215932309627533},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.21118730306625366},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.1726938784122467},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1725059449672699},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1446598768234253},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1316133439540863},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.09214633703231812},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.09155720472335815},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.0},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D042421","descriptor_name":"Histone Code","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D042421","descriptor_name":"Histone Code","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D042421","descriptor_name":"Histone Code","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad165","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad165","pdf_url":"https://academic.oup.com/bib/article-pdf/24/3/bbad165/50410228/bbad165.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37139561","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37139561","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbad165","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad165","pdf_url":"https://academic.oup.com/bib/article-pdf/24/3/bbad165/50410228/bbad165.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1711637756","display_name":null,"funder_award_id":"2021YFC2100801","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4784360784","display_name":null,"funder_award_id":"2020YFA0908700","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5569922501","display_name":null,"funder_award_id":"2021YFC2100800","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6624196571","display_name":null,"funder_award_id":"2021YFC","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G6884513467","display_name":null,"funder_award_id":"2020YFA0908702","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8644249901","display_name":null,"funder_award_id":"62272246","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8764400641","display_name":null,"funder_award_id":"2021YFC210080","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4368361817.pdf","grobid_xml":"https://content.openalex.org/works/W4368361817.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W2010334283","https://openalex.org/W2015416439","https://openalex.org/W2056482755","https://openalex.org/W2065006553","https://openalex.org/W2070021921","https://openalex.org/W2073026107","https://openalex.org/W2090037139","https://openalex.org/W2117977423","https://openalex.org/W2163412235","https://openalex.org/W2171808845","https://openalex.org/W2227178360","https://openalex.org/W2324665822","https://openalex.org/W2769659182","https://openalex.org/W2782454362","https://openalex.org/W2897189049","https://openalex.org/W2939046546","https://openalex.org/W2945038365","https://openalex.org/W2951531839","https://openalex.org/W2951765178","https://openalex.org/W2988641336","https://openalex.org/W3000300544","https://openalex.org/W3102278977","https://openalex.org/W3114643239","https://openalex.org/W3162538759","https://openalex.org/W3175495956","https://openalex.org/W4220743473","https://openalex.org/W4307845770","https://openalex.org/W6761570923","https://openalex.org/W6770792585"],"related_works":["https://openalex.org/W3195254751","https://openalex.org/W3116849561","https://openalex.org/W2136004413","https://openalex.org/W3180808842","https://openalex.org/W2111997778","https://openalex.org/W2793253652","https://openalex.org/W2898514070","https://openalex.org/W2043314233","https://openalex.org/W2065057682","https://openalex.org/W4210812535"],"abstract_inverted_index":{"With":[0],"the":[1,8,53,83,114,144],"development":[2],"of":[3,10,13,34,49,56,79,118,128,139],"chromosome":[4],"conformation":[5,12],"capture":[6],"technique,":[7],"study":[9],"spatial":[11],"a":[14,22,65,101],"genome":[15,58],"based":[16,81],"on":[17,82,153],"Hi-C":[18,95],"technique":[19],"has":[20],"made":[21],"quantum":[23],"leap.":[24],"Previous":[25],"studies":[26],"reveal":[27],"that":[28,134],"genomes":[29],"are":[30],"folded":[31],"into":[32],"hierarchy":[33],"three-dimensional":[35],"(3D)":[36],"structures":[37],"associated":[38],"with":[39,86,122],"topologically":[40],"associating":[41],"domains":[42],"(TADs),":[43],"and":[44,88,108,116,147],"detecting":[45],"TAD":[46,67,119,145,154],"boundaries":[47],"is":[48],"great":[50],"significance":[51],"in":[52],"chromosome-level":[54],"analysis":[55],"3D":[57],"architecture.":[59],"In":[60],"this":[61],"paper,":[62],"we":[63],"propose":[64],"novel":[66],"identification":[68,155],"method,":[69],"LPAD,":[70],"which":[71],"first":[72],"extracts":[73],"node":[74],"correlations":[75],"from":[76,94],"global":[77],"interactions":[78],"chromosomes":[80],"random":[84],"walk":[85],"restart":[87],"then":[89],"builds":[90],"an":[91],"undirected":[92],"graph":[93],"contact":[96],"matrix.":[97],"Next,":[98],"LPAD":[99,135],"designs":[100],"label":[102],"propagation-based":[103],"approach":[104],"to":[105],"discover":[106],"communities":[107],"generates":[109],"TADs.":[110],"Experimental":[111],"results":[112,149],"verify":[113],"effectiveness":[115],"quality":[117],"detections":[120],"compared":[121],"existing":[123],"methods.":[124],"Furthermore,":[125],"experimental":[126],"evaluation":[127],"chromatin":[129],"immunoprecipitation":[130],"sequencing":[131],"data":[132],"shows":[133],"performs":[136],"high":[137],"enrichment":[138],"histone":[140],"modifications":[141],"remarkably":[142],"nearby":[143],"boundaries,":[146],"these":[148],"demonstrate":[150],"LPAD's":[151],"advantages":[152],"accuracy.":[156]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
