{"id":"https://openalex.org/W4367550252","doi":"https://doi.org/10.1093/bib/bbad164","title":"STMHCpan, an accurate Star-Transformer-based extensible framework for predicting MHC I allele binding peptides","display_name":"STMHCpan, an accurate Star-Transformer-based extensible framework for predicting MHC I allele binding peptides","publication_year":2023,"publication_date":"2023-04-29","ids":{"openalex":"https://openalex.org/W4367550252","doi":"https://doi.org/10.1093/bib/bbad164","pmid":"https://pubmed.ncbi.nlm.nih.gov/37122066"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad164","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad164","pdf_url":"https://academic.oup.com/bib/article-pdf/24/3/bbad164/50410338/bbad164.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/24/3/bbad164/50410338/bbad164.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101538412","display_name":"Zheng Ye","orcid":"https://orcid.org/0000-0001-5532-6428"},"institutions":[{"id":"https://openalex.org/I4387154005","display_name":"State Key Laboratory of Digital Medical Engineering","ror":"https://ror.org/03ab0at74","country_code":null,"type":"facility","lineage":["https://openalex.org/I4387154005","https://openalex.org/I76569877"]},{"id":"https://openalex.org/I4210165005","display_name":"BioElectronics (United States)","ror":"https://ror.org/05mh3a113","country_code":"US","type":"company","lineage":["https://openalex.org/I4210165005"]},{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Zheng Ye","raw_affiliation_strings":["Southeast University , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","State Key Laboratory of Bioelectronics , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, Jiangsu 210096, China"],"affiliations":[{"raw_affiliation_string":"Southeast University , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","institution_ids":["https://openalex.org/I76569877"]},{"raw_affiliation_string":"State Key Laboratory of Bioelectronics , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","institution_ids":["https://openalex.org/I4210165005"]},{"raw_affiliation_string":"State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, Jiangsu 210096, China","institution_ids":["https://openalex.org/I76569877","https://openalex.org/I4387154005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091088074","display_name":"Shaohao Li","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165005","display_name":"BioElectronics (United States)","ror":"https://ror.org/05mh3a113","country_code":"US","type":"company","lineage":["https://openalex.org/I4210165005"]},{"id":"https://openalex.org/I4387154005","display_name":"State Key Laboratory of Digital Medical Engineering","ror":"https://ror.org/03ab0at74","country_code":null,"type":"facility","lineage":["https://openalex.org/I4387154005","https://openalex.org/I76569877"]},{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Shaohao Li","raw_affiliation_strings":["Southeast University , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","State Key Laboratory of Bioelectronics , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, Jiangsu 210096, China"],"affiliations":[{"raw_affiliation_string":"Southeast University , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","institution_ids":["https://openalex.org/I76569877"]},{"raw_affiliation_string":"State Key Laboratory of Bioelectronics , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","institution_ids":["https://openalex.org/I4210165005"]},{"raw_affiliation_string":"State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, Jiangsu 210096, China","institution_ids":["https://openalex.org/I76569877","https://openalex.org/I4387154005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101729229","display_name":"Xue Mi","orcid":"https://orcid.org/0000-0002-8771-1547"},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]},{"id":"https://openalex.org/I4387154005","display_name":"State Key Laboratory of Digital Medical Engineering","ror":"https://ror.org/03ab0at74","country_code":null,"type":"facility","lineage":["https://openalex.org/I4387154005","https://openalex.org/I76569877"]},{"id":"https://openalex.org/I4210165005","display_name":"BioElectronics (United States)","ror":"https://ror.org/05mh3a113","country_code":"US","type":"company","lineage":["https://openalex.org/I4210165005"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Xue Mi","raw_affiliation_strings":["Southeast University , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","State Key Laboratory of Bioelectronics , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, Jiangsu 210096, China"],"affiliations":[{"raw_affiliation_string":"Southeast University , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","institution_ids":["https://openalex.org/I76569877"]},{"raw_affiliation_string":"State Key Laboratory of Bioelectronics , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","institution_ids":["https://openalex.org/I4210165005"]},{"raw_affiliation_string":"State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, Jiangsu 210096, China","institution_ids":["https://openalex.org/I76569877","https://openalex.org/I4387154005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008431987","display_name":"Baoyi Shao","orcid":null},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]},{"id":"https://openalex.org/I4210165005","display_name":"BioElectronics (United States)","ror":"https://ror.org/05mh3a113","country_code":"US","type":"company","lineage":["https://openalex.org/I4210165005"]},{"id":"https://openalex.org/I4387154005","display_name":"State Key Laboratory of Digital Medical Engineering","ror":"https://ror.org/03ab0at74","country_code":null,"type":"facility","lineage":["https://openalex.org/I4387154005","https://openalex.org/I76569877"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Baoyi Shao","raw_affiliation_strings":["Southeast University , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","State Key Laboratory of Bioelectronics , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, Jiangsu 210096, China"],"affiliations":[{"raw_affiliation_string":"Southeast University , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","institution_ids":["https://openalex.org/I76569877"]},{"raw_affiliation_string":"State Key Laboratory of Bioelectronics , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","institution_ids":["https://openalex.org/I4210165005"]},{"raw_affiliation_string":"State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, Jiangsu 210096, China","institution_ids":["https://openalex.org/I76569877","https://openalex.org/I4387154005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047316470","display_name":"Zhu Dai","orcid":"https://orcid.org/0000-0003-1512-2775"},"institutions":[{"id":"https://openalex.org/I4210165005","display_name":"BioElectronics (United States)","ror":"https://ror.org/05mh3a113","country_code":"US","type":"company","lineage":["https://openalex.org/I4210165005"]},{"id":"https://openalex.org/I4387154005","display_name":"State Key Laboratory of Digital Medical Engineering","ror":"https://ror.org/03ab0at74","country_code":null,"type":"facility","lineage":["https://openalex.org/I4387154005","https://openalex.org/I76569877"]},{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Zhu Dai","raw_affiliation_strings":["Southeast University , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","State Key Laboratory of Bioelectronics , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, Jiangsu 210096, China"],"affiliations":[{"raw_affiliation_string":"Southeast University , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","institution_ids":["https://openalex.org/I76569877"]},{"raw_affiliation_string":"State Key Laboratory of Bioelectronics , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","institution_ids":["https://openalex.org/I4210165005"]},{"raw_affiliation_string":"State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, Jiangsu 210096, China","institution_ids":["https://openalex.org/I76569877","https://openalex.org/I4387154005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088184178","display_name":"Bo Ding","orcid":"https://orcid.org/0000-0001-8771-6578"},"institutions":[{"id":"https://openalex.org/I4210105806","display_name":"Zhongda Hospital Southeast University","ror":"https://ror.org/01k3hq685","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210105806"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Ding","raw_affiliation_strings":["Department of Obstetrics and Gynecoloty, Zhongda Hospital, School of Medicine, Southeast University , Nanjing 210009 , China"],"affiliations":[{"raw_affiliation_string":"Department of Obstetrics and Gynecoloty, Zhongda Hospital, School of Medicine, Southeast University , Nanjing 210009 , China","institution_ids":["https://openalex.org/I4210105806"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104083378","display_name":"Songwei Feng","orcid":null},"institutions":[{"id":"https://openalex.org/I4210105806","display_name":"Zhongda Hospital Southeast University","ror":"https://ror.org/01k3hq685","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210105806"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Songwei Feng","raw_affiliation_strings":["Department of Obstetrics and Gynecoloty, Zhongda Hospital, School of Medicine, Southeast University , Nanjing 210009 , China"],"affiliations":[{"raw_affiliation_string":"Department of Obstetrics and Gynecoloty, Zhongda Hospital, School of Medicine, Southeast University , Nanjing 210009 , China","institution_ids":["https://openalex.org/I4210105806"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101410372","display_name":"Bo Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]},{"id":"https://openalex.org/I4387154005","display_name":"State Key Laboratory of Digital Medical Engineering","ror":"https://ror.org/03ab0at74","country_code":null,"type":"facility","lineage":["https://openalex.org/I4387154005","https://openalex.org/I76569877"]},{"id":"https://openalex.org/I4210165005","display_name":"BioElectronics (United States)","ror":"https://ror.org/05mh3a113","country_code":"US","type":"company","lineage":["https://openalex.org/I4210165005"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Bo Sun","raw_affiliation_strings":["Southeast University , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","State Key Laboratory of Bioelectronics , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, Jiangsu 210096, China"],"affiliations":[{"raw_affiliation_string":"Southeast University , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","institution_ids":["https://openalex.org/I76569877"]},{"raw_affiliation_string":"State Key Laboratory of Bioelectronics , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","institution_ids":["https://openalex.org/I4210165005"]},{"raw_affiliation_string":"State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, Jiangsu 210096, China","institution_ids":["https://openalex.org/I76569877","https://openalex.org/I4387154005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009824612","display_name":"Yang Shen","orcid":"https://orcid.org/0000-0002-3313-5062"},"institutions":[{"id":"https://openalex.org/I4210105806","display_name":"Zhongda Hospital Southeast University","ror":"https://ror.org/01k3hq685","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210105806"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yang Shen","raw_affiliation_strings":["Department of Obstetrics and Gynecoloty, Zhongda Hospital, School of Medicine, Southeast University , Nanjing 210009 , China"],"affiliations":[{"raw_affiliation_string":"Department of Obstetrics and Gynecoloty, Zhongda Hospital, School of Medicine, Southeast University , Nanjing 210009 , China","institution_ids":["https://openalex.org/I4210105806"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101969583","display_name":"Zhongdang Xiao","orcid":"https://orcid.org/0000-0003-2288-951X"},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]},{"id":"https://openalex.org/I4387154005","display_name":"State Key Laboratory of Digital Medical Engineering","ror":"https://ror.org/03ab0at74","country_code":null,"type":"facility","lineage":["https://openalex.org/I4387154005","https://openalex.org/I76569877"]},{"id":"https://openalex.org/I4210165005","display_name":"BioElectronics (United States)","ror":"https://ror.org/05mh3a113","country_code":"US","type":"company","lineage":["https://openalex.org/I4210165005"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Zhongdang Xiao","raw_affiliation_strings":["Southeast University , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","State Key Laboratory of Bioelectronics , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, Jiangsu 210096, China"],"affiliations":[{"raw_affiliation_string":"Southeast University , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","institution_ids":["https://openalex.org/I76569877"]},{"raw_affiliation_string":"State Key Laboratory of Bioelectronics , School of Biological Science and Medical Engineering, , Nanjing, Jiangsu 210096 , China","institution_ids":["https://openalex.org/I4210165005"]},{"raw_affiliation_string":"State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, Jiangsu 210096, China","institution_ids":["https://openalex.org/I76569877","https://openalex.org/I4387154005"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5009824612","https://openalex.org/A5101969583"],"corresponding_institution_ids":["https://openalex.org/I4210105806","https://openalex.org/I4210165005","https://openalex.org/I4387154005","https://openalex.org/I76569877"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":3.7498,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.93581766,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"24","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9876000285148621,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/overfitting","display_name":"Overfitting","score":0.7737380266189575},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7581923604011536},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6044944524765015},{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.5786746740341187},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5645585060119629},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.5369477272033691},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5195953845977783},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.488457590341568},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.41898036003112793},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3758293092250824},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3545991778373718},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.33616185188293457},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.20412087440490723},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1687735915184021},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.11801761388778687},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.10646781325340271}],"concepts":[{"id":"https://openalex.org/C22019652","wikidata":"https://www.wikidata.org/wiki/Q331309","display_name":"Overfitting","level":3,"score":0.7737380266189575},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7581923604011536},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6044944524765015},{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.5786746740341187},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5645585060119629},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.5369477272033691},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5195953845977783},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.488457590341568},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.41898036003112793},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3758293092250824},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3545991778373718},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.33616185188293457},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.20412087440490723},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1687735915184021},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.11801761388778687},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.10646781325340271},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad164","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad164","pdf_url":"https://academic.oup.com/bib/article-pdf/24/3/bbad164/50410338/bbad164.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37122066","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37122066","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbad164","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad164","pdf_url":"https://academic.oup.com/bib/article-pdf/24/3/bbad164/50410338/bbad164.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2376276132","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G3085993365","display_name":null,"funder_award_id":"(Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3303564023","display_name":null,"funder_award_id":"81671807","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4020255992","display_name":null,"funder_award_id":"Project","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4654795997","display_name":null,"funder_award_id":"82072078","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7726157001","display_name":null,"funder_award_id":"Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G793751557","display_name":null,"funder_award_id":"2242018K3DN05","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G8951484681","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G8956904727","display_name":null,"funder_award_id":"202074","funder_id":"https://openalex.org/F4320321605","funder_display_name":"Government of Jiangsu Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321605","display_name":"Government of Jiangsu Province","ror":"https://ror.org/004svx814"},{"id":"https://openalex.org/F4320324856","display_name":"Southeast University","ror":"https://ror.org/04ct4d772"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4367550252.pdf"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W2053931156","https://openalex.org/W2076455712","https://openalex.org/W2120399005","https://openalex.org/W2138900023","https://openalex.org/W2151455241","https://openalex.org/W2168688111","https://openalex.org/W2271914738","https://openalex.org/W2721701181","https://openalex.org/W2748343486","https://openalex.org/W2898389621","https://openalex.org/W2904711643","https://openalex.org/W2912290085","https://openalex.org/W2915716523","https://openalex.org/W2947207002","https://openalex.org/W2979826702","https://openalex.org/W3015468748","https://openalex.org/W3042910002","https://openalex.org/W3119872582","https://openalex.org/W3122375914","https://openalex.org/W3133696297","https://openalex.org/W3134443156","https://openalex.org/W3159295432","https://openalex.org/W3166397150","https://openalex.org/W3168124404","https://openalex.org/W4205185581","https://openalex.org/W4220655797","https://openalex.org/W4250335244","https://openalex.org/W4256259473","https://openalex.org/W4281489883","https://openalex.org/W4282958541","https://openalex.org/W4295312788","https://openalex.org/W4300543510","https://openalex.org/W4306705230","https://openalex.org/W4385245566","https://openalex.org/W6739607658","https://openalex.org/W6739901393","https://openalex.org/W6766978945","https://openalex.org/W6776048684","https://openalex.org/W6790690058","https://openalex.org/W6796494063","https://openalex.org/W6796707148","https://openalex.org/W6838271186"],"related_works":["https://openalex.org/W1574414179","https://openalex.org/W4362597605","https://openalex.org/W2922073769","https://openalex.org/W4297676672","https://openalex.org/W4281702477","https://openalex.org/W4378510483","https://openalex.org/W2490526372","https://openalex.org/W4376166922","https://openalex.org/W4221142204","https://openalex.org/W757031997"],"abstract_inverted_index":{"Peptide-major":[0],"histocompatibility":[1],"complex":[2],"I":[3,47],"(MHC":[4],"I)":[5],"binding":[6,48],"affinity":[7,84],"prediction":[8],"is":[9,106,115],"crucial":[10],"for":[11,45,109,118],"vaccine":[12],"development,":[13],"but":[14],"existing":[15,89],"methods":[16],"face":[17],"limitations":[18],"such":[19],"as":[20],"small":[21],"datasets,":[22],"model":[23],"overfitting":[24],"due":[25],"to":[26,57],"excessive":[27],"parameters":[28,81],"and":[29,64,105,121],"suboptimal":[30],"performance.":[31],"Here,":[32],"we":[33],"present":[34],"STMHCPan":[35,75,87],"(STAR-MHCPan),":[36],"an":[37,54],"open-source":[38],"package":[39],"based":[40],"on":[41],"the":[42,59],"Star-Transformer":[43],"model,":[44],"MHC":[46],"peptide":[49],"prediction.":[50,68],"Our":[51,113],"approach":[52],"introduces":[53],"attention":[55],"mechanism":[56],"improve":[58],"deep":[60,72],"learning":[61,73],"network":[62],"architecture":[63],"performance":[65,78],"in":[66,82],"antigen":[67],"Compared":[69],"with":[70,79],"classical":[71],"algorithms,":[74],"exhibits":[76],"improved":[77],"fewer":[80],"receptor":[83],"training.":[85],"Furthermore,":[86],"outperforms":[88],"ligand":[90],"benchmark":[91],"datasets":[92],"identified":[93],"by":[94],"mass":[95],"spectrometry.":[96],"It":[97],"can":[98],"also":[99],"handle":[100],"peptides":[101],"of":[102],"arbitrary":[103],"length":[104],"highly":[107],"scalable":[108],"predicting":[110],"T-cell":[111],"responses.":[112],"software":[114],"freely":[116],"available":[117],"use,":[119],"training":[120],"extension":[122],"through":[123],"Github":[124],"(https://github.com/Luckysoutheast/STMHCPan.git).":[125]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":1}],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}