{"id":"https://openalex.org/W4376873201","doi":"https://doi.org/10.1093/bib/bbad155","title":"Attention-based cross domain graph neural network for prediction of drug\u2013drug interactions","display_name":"Attention-based cross domain graph neural network for prediction of drug\u2013drug interactions","publication_year":2023,"publication_date":"2023-05-17","ids":{"openalex":"https://openalex.org/W4376873201","doi":"https://doi.org/10.1093/bib/bbad155","pmid":"https://pubmed.ncbi.nlm.nih.gov/37195815"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad155","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbad155","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014009982","display_name":"Hui Yu","orcid":"https://orcid.org/0000-0002-5314-8127"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hui Yu","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072 , China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024355965","display_name":"KangKang Li","orcid":"https://orcid.org/0000-0001-9923-3610"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"KangKang Li","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072 , China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068582245","display_name":"WenMin Dong","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"WenMin Dong","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072 , China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108837384","display_name":"ShuangHong Song","orcid":null},"institutions":[{"id":"https://openalex.org/I88830068","display_name":"Shaanxi Normal University","ror":"https://ror.org/0170z8493","country_code":"CN","type":"education","lineage":["https://openalex.org/I88830068"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"ShuangHong Song","raw_affiliation_strings":["College of Life Sciences, Shaanxi Normal University , Xi\u2019an 710119 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Shaanxi Normal University , Xi\u2019an 710119 , China","institution_ids":["https://openalex.org/I88830068"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078622343","display_name":"Chen Gao","orcid":"https://orcid.org/0000-0002-7561-5646"},"institutions":[{"id":"https://openalex.org/I2801618472","display_name":"PLA Rocket Force University of Engineering","ror":"https://ror.org/00gg5zj35","country_code":"CN","type":"education","lineage":["https://openalex.org/I2801618472"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen Gao","raw_affiliation_strings":["Rocket Force University of Engineering , Xi\u2019an 710025 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rocket Force University of Engineering , Xi\u2019an 710025 , China","institution_ids":["https://openalex.org/I2801618472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000609872","display_name":"Jian\u2010Yu Shi","orcid":"https://orcid.org/0000-0002-2303-273X"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"JianYu Shi","raw_affiliation_strings":["School of Life Sciences, Northwestern Polytechnical University , Xi\u2019an 710072 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, Northwestern Polytechnical University , Xi\u2019an 710072 , China","institution_ids":["https://openalex.org/I17145004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5000609872","https://openalex.org/A5014009982"],"corresponding_institution_ids":["https://openalex.org/I17145004"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.4544,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.9374978,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"24","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.980400025844574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9793000221252441,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7914564609527588},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5994629263877869},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5543971657752991},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5108780264854431},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5078664422035217},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5059265494346619},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.48263344168663025},{"id":"https://openalex.org/keywords/drug-reaction","display_name":"Drug reaction","score":0.46902740001678467},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.4405534267425537},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39763981103897095},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.11822518706321716},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.07707902789115906}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7914564609527588},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5994629263877869},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5543971657752991},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5108780264854431},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5078664422035217},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5059265494346619},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.48263344168663025},{"id":"https://openalex.org/C2993432071","wikidata":"https://www.wikidata.org/wiki/Q45959","display_name":"Drug reaction","level":3,"score":0.46902740001678467},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.4405534267425537},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39763981103897095},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.11822518706321716},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.07707902789115906},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad155","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbad155","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37195815","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37195815","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.5799999833106995,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G5212910969","display_name":null,"funder_award_id":"SY20210003","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G6318023395","display_name":"\u590d\u6742\u7c7b\u578b\u836f\u7269\u76f8\u4e92\u4f5c\u7528\u9274\u522b\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61872297","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321392","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1595525817","https://openalex.org/W1978264672","https://openalex.org/W2017602106","https://openalex.org/W2043249607","https://openalex.org/W2168103112","https://openalex.org/W2460186498","https://openalex.org/W2562885672","https://openalex.org/W2591704587","https://openalex.org/W2648802171","https://openalex.org/W2786016794","https://openalex.org/W2798133167","https://openalex.org/W2802200505","https://openalex.org/W2906413107","https://openalex.org/W2937594636","https://openalex.org/W2943714799","https://openalex.org/W2946438679","https://openalex.org/W2974658886","https://openalex.org/W2975498843","https://openalex.org/W3024894285","https://openalex.org/W3089843526","https://openalex.org/W3108458441","https://openalex.org/W3139253280","https://openalex.org/W3152893301","https://openalex.org/W3157889929","https://openalex.org/W3160363665","https://openalex.org/W3198879735","https://openalex.org/W3212567773","https://openalex.org/W4281850946","https://openalex.org/W4294884620","https://openalex.org/W4294908374","https://openalex.org/W4297733535","https://openalex.org/W4307093167","https://openalex.org/W6724214775","https://openalex.org/W6733741073","https://openalex.org/W6739901393","https://openalex.org/W6745537798","https://openalex.org/W6751367952","https://openalex.org/W6757586295","https://openalex.org/W6761961326","https://openalex.org/W6772468720","https://openalex.org/W6777984693","https://openalex.org/W6779393347","https://openalex.org/W6799707405"],"related_works":["https://openalex.org/W111277538","https://openalex.org/W2544208578","https://openalex.org/W2044946730","https://openalex.org/W2377651601","https://openalex.org/W2378947884","https://openalex.org/W1583422155","https://openalex.org/W1649619740","https://openalex.org/W3213252596","https://openalex.org/W1534006406","https://openalex.org/W2165071883"],"abstract_inverted_index":{"Drug-drug":[0],"interactions":[1],"(DDI)":[2],"may":[3],"lead":[4],"to":[5,124],"adverse":[6],"reactions":[7],"in":[8,42,111,115,136,141],"human":[9],"body":[10],"and":[11,49,92,144,173],"accurate":[12],"prediction":[13,26,138],"of":[14,23,130,139,157],"DDI":[15,25,35,53,66,84],"can":[16,133,169],"mitigate":[17],"the":[18,38,70,88,101,137,155,175],"medical":[19],"risk.":[20],"Currently,":[21],"most":[22],"computer-aided":[24],"methods":[27],"construct":[28],"models":[29,55],"based":[30],"on":[31,150],"drug-associated":[32],"features":[33],"or":[34],"network,":[36,118],"ignoring":[37],"potential":[39],"information":[40,94,109],"contained":[41,110],"drug-related":[43,89,112],"biological":[44,116],"entities":[45,91,114],"such":[46],"as":[47],"targets":[48],"genes.":[50],"Besides,":[51],"existing":[52,102],"network-based":[54],"could":[56],"not":[57,105],"make":[58],"effective":[59],"predictions":[60],"for":[61,83],"drugs":[62],"without":[63],"any":[64],"known":[65],"records.":[67],"To":[68],"address":[69],"above":[71],"limitations,":[72],"we":[73,153],"propose":[74],"an":[75],"attention-based":[76],"cross":[77,96],"domain":[78,97],"graph":[79],"neural":[80],"network":[81],"(ACDGNN)":[82],"prediction,":[85],"which":[86],"considers":[87,107],"different":[90,128],"propagate":[93],"through":[95],"operation.":[98],"Different":[99],"from":[100],"methods,":[103],"ACDGNN":[104,132,158,168],"only":[106],"rich":[108],"biomedical":[113],"heterogeneous":[117],"but":[119],"also":[120],"adopts":[121],"cross-domain":[122],"transformation":[123],"eliminate":[125],"heterogeneity":[126],"between":[127],"types":[129],"entities.":[131],"be":[134],"used":[135],"DDIs":[140,172],"both":[142],"transductive":[143],"inductive":[145],"setting.":[146],"By":[147],"conducting":[148],"experiments":[149],"real-world":[151],"dataset,":[152],"compare":[154],"performance":[156],"with":[159],"several":[160],"state-of-the-art":[161],"methods.":[162],"The":[163],"experimental":[164],"results":[165],"show":[166],"that":[167],"effectively":[170],"predict":[171],"outperform":[174],"comparison":[176],"models.":[177]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
