{"id":"https://openalex.org/W4322718303","doi":"https://doi.org/10.1093/bib/bbad058","title":"Designing antimicrobial peptides using deep learning and molecular dynamic simulations","display_name":"Designing antimicrobial peptides using deep learning and molecular dynamic simulations","publication_year":2023,"publication_date":"2023-03-01","ids":{"openalex":"https://openalex.org/W4322718303","doi":"https://doi.org/10.1093/bib/bbad058","pmid":"https://pubmed.ncbi.nlm.nih.gov/36857616"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad058","pdf_url":"https://academic.oup.com/bib/article-pdf/24/2/bbad058/49560424/bbad058.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/2/bbad058/49560424/bbad058.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000722823","display_name":"Qiushi Cao","orcid":"https://orcid.org/0000-0002-2768-0814"},"institutions":[{"id":"https://openalex.org/I4210113896","display_name":"Qingdao National Laboratory for Marine Science and Technology","ror":"https://ror.org/026sv7t11","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210113896"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiushi Cao","raw_affiliation_strings":["Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China , 5 Yushan Road, Qingdao 266003 , China","Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China"],"raw_orcid":"https://orcid.org/0000-0002-2768-0814","affiliations":[{"raw_affiliation_string":"Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China , 5 Yushan Road, Qingdao 266003 , China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China","institution_ids":["https://openalex.org/I4210113896"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032901303","display_name":"Cheng Ge","orcid":"https://orcid.org/0000-0003-4010-5686"},"institutions":[{"id":"https://openalex.org/I4210113896","display_name":"Qingdao National Laboratory for Marine Science and Technology","ror":"https://ror.org/026sv7t11","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210113896"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cheng Ge","raw_affiliation_strings":["Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China , 5 Yushan Road, Qingdao 266003 , China","Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China"],"raw_orcid":"https://orcid.org/0000-0003-4010-5686","affiliations":[{"raw_affiliation_string":"Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China , 5 Yushan Road, Qingdao 266003 , China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China","institution_ids":["https://openalex.org/I4210113896"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101406969","display_name":"Xuejie Wang","orcid":"https://orcid.org/0000-0003-3254-5999"},"institutions":[{"id":"https://openalex.org/I4210113896","display_name":"Qingdao National Laboratory for Marine Science and Technology","ror":"https://ror.org/026sv7t11","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210113896"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuejie Wang","raw_affiliation_strings":["College of Marine Life Sciences, Ocean University of China , Qingdao 266003 , China","Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Marine Life Sciences, Ocean University of China , Qingdao 266003 , China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China","institution_ids":["https://openalex.org/I4210113896"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015410355","display_name":"Peta J. Harvey","orcid":"https://orcid.org/0000-0003-4735-6242"},"institutions":[{"id":"https://openalex.org/I1337719021","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86","country_code":"AU","type":"government","lineage":["https://openalex.org/I1337719021","https://openalex.org/I2801453606","https://openalex.org/I4210132349"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I4210139041","display_name":"ARC Centre of Excellence for Innovations in Peptide and Protein Science","ror":"https://ror.org/04dxv8v14","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1337719021","https://openalex.org/I165143802","https://openalex.org/I2801453606","https://openalex.org/I4210132349","https://openalex.org/I4210139041"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Peta J Harvey","raw_affiliation_strings":["Institute for Molecular Bioscience, Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Queensland , Brisbane, QLD, 4072 Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Queensland , Brisbane, QLD, 4072 Australia","institution_ids":["https://openalex.org/I1337719021","https://openalex.org/I165143802","https://openalex.org/I4210139041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100321171","display_name":"Zixuan Zhang","orcid":"https://orcid.org/0009-0000-5250-8672"},"institutions":[{"id":"https://openalex.org/I4210113896","display_name":"Qingdao National Laboratory for Marine Science and Technology","ror":"https://ror.org/026sv7t11","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210113896"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zixuan Zhang","raw_affiliation_strings":["Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China , 5 Yushan Road, Qingdao 266003 , China","Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China , 5 Yushan Road, Qingdao 266003 , China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China","institution_ids":["https://openalex.org/I4210113896"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040419079","display_name":"Yuan Ma","orcid":null},"institutions":[{"id":"https://openalex.org/I4210113896","display_name":"Qingdao National Laboratory for Marine Science and Technology","ror":"https://ror.org/026sv7t11","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210113896"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuan Ma","raw_affiliation_strings":["Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China , 5 Yushan Road, Qingdao 266003 , China","Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China , 5 Yushan Road, Qingdao 266003 , China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China","institution_ids":["https://openalex.org/I4210113896"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101544783","display_name":"Xianghong Wang","orcid":"https://orcid.org/0000-0003-2172-2582"},"institutions":[{"id":"https://openalex.org/I4210113896","display_name":"Qingdao National Laboratory for Marine Science and Technology","ror":"https://ror.org/026sv7t11","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210113896"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianghong Wang","raw_affiliation_strings":["College of Marine Life Sciences, Ocean University of China , Qingdao 266003 , China","Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Marine Life Sciences, Ocean University of China , Qingdao 266003 , China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China","institution_ids":["https://openalex.org/I4210113896"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014223975","display_name":"Xinying Jia","orcid":"https://orcid.org/0000-0003-0133-8321"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Xinying Jia","raw_affiliation_strings":["Centre for Advanced Imaging, The University of Queensland , St Lucia QLD 4072"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Advanced Imaging, The University of Queensland , St Lucia QLD 4072","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027954268","display_name":"Mehdi Mobli","orcid":"https://orcid.org/0000-0003-2420-4262"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Mehdi Mobli","raw_affiliation_strings":["Centre for Advanced Imaging, The University of Queensland , St Lucia QLD 4072"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Advanced Imaging, The University of Queensland , St Lucia QLD 4072","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079308758","display_name":"David J. Craik","orcid":"https://orcid.org/0000-0003-0007-6796"},"institutions":[{"id":"https://openalex.org/I1337719021","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86","country_code":"AU","type":"government","lineage":["https://openalex.org/I1337719021","https://openalex.org/I2801453606","https://openalex.org/I4210132349"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I4210139041","display_name":"ARC Centre of Excellence for Innovations in Peptide and Protein Science","ror":"https://ror.org/04dxv8v14","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1337719021","https://openalex.org/I165143802","https://openalex.org/I2801453606","https://openalex.org/I4210132349","https://openalex.org/I4210139041"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"David J Craik","raw_affiliation_strings":["Institute for Molecular Bioscience, Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Queensland , Brisbane, QLD, 4072 Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Queensland , Brisbane, QLD, 4072 Australia","institution_ids":["https://openalex.org/I1337719021","https://openalex.org/I165143802","https://openalex.org/I4210139041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028704221","display_name":"Tao Jiang","orcid":"https://orcid.org/0000-0002-6590-5041"},"institutions":[{"id":"https://openalex.org/I4210113896","display_name":"Qingdao National Laboratory for Marine Science and Technology","ror":"https://ror.org/026sv7t11","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210113896"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Jiang","raw_affiliation_strings":["Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China , 5 Yushan Road, Qingdao 266003 , China","Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China , 5 Yushan Road, Qingdao 266003 , China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China","institution_ids":["https://openalex.org/I4210113896"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083965647","display_name":"Jinbo Yang","orcid":"https://orcid.org/0000-0003-3517-9701"},"institutions":[{"id":"https://openalex.org/I4210113896","display_name":"Qingdao National Laboratory for Marine Science and Technology","ror":"https://ror.org/026sv7t11","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210113896"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinbo Yang","raw_affiliation_strings":["Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China , 5 Yushan Road, Qingdao 266003 , China","Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China , 5 Yushan Road, Qingdao 266003 , China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China","institution_ids":["https://openalex.org/I4210113896"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079932099","display_name":"Zhiqiang Wei","orcid":"https://orcid.org/0000-0002-2830-8301"},"institutions":[{"id":"https://openalex.org/I4210113896","display_name":"Qingdao National Laboratory for Marine Science and Technology","ror":"https://ror.org/026sv7t11","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210113896"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiqiang Wei","raw_affiliation_strings":["College of Computer Science and Technology, Ocean University of China , Qingdao 266100 , China","Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China , Qingdao 266100 , China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China","institution_ids":["https://openalex.org/I4210113896"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066509079","display_name":"Yan Wang","orcid":"https://orcid.org/0000-0003-4632-5786"},"institutions":[{"id":"https://openalex.org/I4210113896","display_name":"Qingdao National Laboratory for Marine Science and Technology","ror":"https://ror.org/026sv7t11","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210113896"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yan Wang","raw_affiliation_strings":["College of Marine Life Sciences, Ocean University of China , Qingdao 266003 , China","Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Marine Life Sciences, Ocean University of China , Qingdao 266003 , China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China","institution_ids":["https://openalex.org/I4210113896"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071710594","display_name":"Shan Chang","orcid":"https://orcid.org/0000-0001-7169-9398"},"institutions":[{"id":"https://openalex.org/I4210144214","display_name":"Jiangsu University of Technology","ror":"https://ror.org/04jabhf80","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210144214"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shan Chang","raw_affiliation_strings":["Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology , Changzhou 213001 , China"],"raw_orcid":"https://orcid.org/0000-0001-7169-9398","affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology , Changzhou 213001 , China","institution_ids":["https://openalex.org/I4210144214"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086459069","display_name":"Rilei Yu","orcid":"https://orcid.org/0000-0001-6625-2014"},"institutions":[{"id":"https://openalex.org/I4210113896","display_name":"Qingdao National Laboratory for Marine Science and Technology","ror":"https://ror.org/026sv7t11","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210113896"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Rilei Yu","raw_affiliation_strings":["Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China , 5 Yushan Road, Qingdao 266003 , China","Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China , 5 Yushan Road, Qingdao 266003 , China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"Qingdao National Laboratory for Marine Science and Technology , Qingdao 266003 , China","institution_ids":["https://openalex.org/I4210113896"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5066509079","https://openalex.org/A5071710594","https://openalex.org/A5086459069"],"corresponding_institution_ids":["https://openalex.org/I4210113896","https://openalex.org/I4210144214","https://openalex.org/I59028903"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":16.1002,"has_fulltext":true,"cited_by_count":110,"citation_normalized_percentile":{"value":0.99628654,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"24","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antimicrobial-peptides","display_name":"Antimicrobial peptides","score":0.8179911375045776},{"id":"https://openalex.org/keywords/stenotrophomonas-maltophilia","display_name":"Stenotrophomonas maltophilia","score":0.6043469309806824},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6008474826812744},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5906426906585693},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5430031418800354},{"id":"https://openalex.org/keywords/structural-motif","display_name":"Structural motif","score":0.4452541470527649},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.436051607131958},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42632368206977844},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34621763229370117},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.28379884362220764},{"id":"https://openalex.org/keywords/pseudomonas-aeruginosa","display_name":"Pseudomonas aeruginosa","score":0.24191081523895264},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2274552881717682},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12405166029930115}],"concepts":[{"id":"https://openalex.org/C540938839","wikidata":"https://www.wikidata.org/wiki/Q1201508","display_name":"Antimicrobial peptides","level":3,"score":0.8179911375045776},{"id":"https://openalex.org/C2776352461","wikidata":"https://www.wikidata.org/wiki/Q142705","display_name":"Stenotrophomonas maltophilia","level":4,"score":0.6043469309806824},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6008474826812744},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5906426906585693},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5430031418800354},{"id":"https://openalex.org/C132677234","wikidata":"https://www.wikidata.org/wiki/Q3273544","display_name":"Structural motif","level":2,"score":0.4452541470527649},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.436051607131958},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42632368206977844},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34621763229370117},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.28379884362220764},{"id":"https://openalex.org/C2777637488","wikidata":"https://www.wikidata.org/wiki/Q31856","display_name":"Pseudomonas aeruginosa","level":3,"score":0.24191081523895264},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2274552881717682},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12405166029930115}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D006090","descriptor_name":"Gram-Negative Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006090","descriptor_name":"Gram-Negative Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006090","descriptor_name":"Gram-Negative Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006094","descriptor_name":"Gram-Positive Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006094","descriptor_name":"Gram-Positive Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006094","descriptor_name":"Gram-Positive Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbad058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad058","pdf_url":"https://academic.oup.com/bib/article-pdf/24/2/bbad058/49560424/bbad058.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36857616","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36857616","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbad058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad058","pdf_url":"https://academic.oup.com/bib/article-pdf/24/2/bbad058/49560424/bbad058.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1206874926","display_name":null,"funder_award_id":"2018ZX09735-004","funder_id":"https://openalex.org/F4320329860","funder_display_name":"National Science and Technology Major Project"},{"id":"https://openalex.org/G2064855699","display_name":null,"funder_award_id":"82122064","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3791141413","display_name":"Advancing peptide-based drug design","funder_award_id":"2009564","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G5572172683","display_name":null,"funder_award_id":"CE200100012","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G8489493968","display_name":null,"funder_award_id":"42176108","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G857746265","display_name":null,"funder_award_id":"32171267","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320329860","display_name":"National Science and Technology Major Project","ror":null},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4322718303.pdf","grobid_xml":"https://content.openalex.org/works/W4322718303.grobid-xml"},"referenced_works_count":67,"referenced_works":["https://openalex.org/W1979973356","https://openalex.org/W2025938842","https://openalex.org/W2034129786","https://openalex.org/W2067402644","https://openalex.org/W2103945336","https://openalex.org/W2147533449","https://openalex.org/W2154714625","https://openalex.org/W2163316049","https://openalex.org/W2167785149","https://openalex.org/W2170747616","https://openalex.org/W2175270296","https://openalex.org/W2187089797","https://openalex.org/W2189116376","https://openalex.org/W2404280981","https://openalex.org/W2604779599","https://openalex.org/W2739980134","https://openalex.org/W2790352202","https://openalex.org/W2791848964","https://openalex.org/W2792631429","https://openalex.org/W2901282632","https://openalex.org/W2906960763","https://openalex.org/W2914965474","https://openalex.org/W2971787971","https://openalex.org/W2981587771","https://openalex.org/W2989064569","https://openalex.org/W2999336918","https://openalex.org/W3003673046","https://openalex.org/W3023413280","https://openalex.org/W3027325047","https://openalex.org/W3036144909","https://openalex.org/W3037279713","https://openalex.org/W3040513559","https://openalex.org/W3045294277","https://openalex.org/W3081615418","https://openalex.org/W3082620742","https://openalex.org/W3094421290","https://openalex.org/W3094708881","https://openalex.org/W3111460299","https://openalex.org/W3112601518","https://openalex.org/W3117992890","https://openalex.org/W3131869701","https://openalex.org/W3135156311","https://openalex.org/W3146944767","https://openalex.org/W3154086429","https://openalex.org/W3164698295","https://openalex.org/W3177298550","https://openalex.org/W3177828909","https://openalex.org/W3187251571","https://openalex.org/W3196587048","https://openalex.org/W3212983993","https://openalex.org/W3217347090","https://openalex.org/W4213430678","https://openalex.org/W4214943162","https://openalex.org/W4226148785","https://openalex.org/W4235106149","https://openalex.org/W4285405240","https://openalex.org/W4292678539","https://openalex.org/W4297263351","https://openalex.org/W4304114151","https://openalex.org/W4308370073","https://openalex.org/W4308834846","https://openalex.org/W4309452766","https://openalex.org/W4309578061","https://openalex.org/W6667333778","https://openalex.org/W6686723365","https://openalex.org/W6749238564","https://openalex.org/W6782303958"],"related_works":["https://openalex.org/W3147428629","https://openalex.org/W2380595568","https://openalex.org/W2371210626","https://openalex.org/W2002841577","https://openalex.org/W2975236406","https://openalex.org/W2355316318","https://openalex.org/W2376735077","https://openalex.org/W2377069240","https://openalex.org/W2380418546","https://openalex.org/W2391196954"],"abstract_inverted_index":{"With":[0],"the":[1,40,117,141,150,173,200],"emergence":[2],"of":[3,44,109,116,130,143,167,175,202],"multidrug-resistant":[4],"bacteria,":[5],"antimicrobial":[6],"peptides":[7,96],"(AMPs)":[8],"offer":[9],"promising":[10],"options":[11],"for":[12,212],"replacing":[13],"traditional":[14,26],"antibiotics":[15],"to":[16,39,63,105,162],"treat":[17],"bacterial":[18],"infections,":[19],"but":[20],"discovering":[21],"and":[22,31,46,65,78,91,103,124,170,188,205],"designing":[23],"AMPs":[24,45,84,102,204],"using":[25],"methods":[27],"is":[28],"a":[29,106,158,164],"time-consuming":[30],"costly":[32],"process.":[33],"Deep":[34],"learning":[35,194],"has":[36],"been":[37],"applied":[38],"de":[41],"novo":[42],"design":[43,64,163],"address":[47],"AMP":[48],"classification":[49],"with":[50,100,149],"high":[51],"efficiency.":[52],"In":[53],"this":[54,131],"study,":[55],"several":[56],"natural":[57],"language":[58],"processing":[59],"models":[60],"were":[61,85],"combined":[62],"identify":[66],"AMPs,":[67],"i.e.":[68],"sequence":[69],"generative":[70],"adversarial":[71],"nets,":[72],"bidirectional":[73],"encoder":[74],"representations":[75],"from":[76],"transformers":[77],"multilayer":[79],"perceptron.":[80],"Then,":[81],"six":[82],"candidate":[83],"screened":[86],"by":[87,136,153,181],"AlphaFold2":[88],"structure":[89],"prediction":[90],"molecular":[92],"dynamic":[93],"simulations.":[94],"These":[95],"show":[97],"low":[98],"homology":[99],"known":[101],"belong":[104],"novel":[107,132,203,214],"class":[108],"AMPs.":[110,215],"After":[111],"initial":[112],"bioactivity":[113],"testing,":[114],"one":[115],"peptides,":[118],"A-222,":[119],"showed":[120],"inhibition":[121],"against":[122,183],"gram-positive":[123],"gram-negative":[125],"bacteria.":[126],"The":[127],"structural":[128],"analysis":[129],"peptide":[133,168],"A-222":[134],"obtained":[135],"nuclear":[137],"magnetic":[138],"resonance":[139],"confirmed":[140],"presence":[142],"an":[144,209],"alpha-helix,":[145],"which":[146],"was":[147],"consistent":[148],"results":[151],"predicted":[152],"AlphaFold2.":[154],"We":[155],"then":[156],"performed":[157],"structure-activity":[159],"relationship":[160],"study":[161],"new":[165],"series":[166],"analogs":[169,177],"found":[171],"that":[172],"activities":[174],"these":[176],"could":[178],"be":[179],"increased":[180],"4-8-fold":[182],"Stenotrophomonas":[184],"maltophilia":[185],"WH":[186],"006":[187],"Pseudomonas":[189],"aeruginosa":[190],"PAO1.":[191],"Overall,":[192],"deep":[193],"shows":[195],"great":[196],"potential":[197],"in":[198],"accelerating":[199],"discovery":[201],"holds":[206],"promise":[207],"as":[208],"important":[210],"tool":[211],"developing":[213]},"counts_by_year":[{"year":2026,"cited_by_count":25},{"year":2025,"cited_by_count":47},{"year":2024,"cited_by_count":31},{"year":2023,"cited_by_count":7}],"updated_date":"2026-08-05T07:39:15.569665","created_date":"2025-10-10T00:00:00"}
