{"id":"https://openalex.org/W4320489547","doi":"https://doi.org/10.1093/bib/bbad048","title":"Identifying spatial domain by adapting transcriptomics with histology through contrastive learning","display_name":"Identifying spatial domain by adapting transcriptomics with histology through contrastive learning","publication_year":2023,"publication_date":"2023-02-13","ids":{"openalex":"https://openalex.org/W4320489547","doi":"https://doi.org/10.1093/bib/bbad048","pmid":"https://pubmed.ncbi.nlm.nih.gov/36781228"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbad048","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad048","pdf_url":"https://academic.oup.com/bib/article-pdf/24/2/bbad048/49560108/bbad048.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/2/bbad048/49560108/bbad048.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088056853","display_name":"Yuansong Zeng","orcid":"https://orcid.org/0000-0002-3145-430X"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuansong Zeng","raw_affiliation_strings":["School of Computer Science and Engineering, Sun Yat-sen University , Guangzhou 510000 , China"],"raw_orcid":"https://orcid.org/0000-0002-3145-430X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Sun Yat-sen University , Guangzhou 510000 , China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077105641","display_name":"Rui Yin","orcid":"https://orcid.org/0000-0002-1403-0396"},"institutions":[{"id":"https://openalex.org/I4210098034","display_name":"Key Laboratory of Guangdong Province","ror":"https://ror.org/00swtqp09","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210098034"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rui Yin","raw_affiliation_strings":["Key Laboratory of Machine Intelligence and Advanced Computing (MOE) , Guangzhou 510000 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Machine Intelligence and Advanced Computing (MOE) , Guangzhou 510000 , China","institution_ids":["https://openalex.org/I4210098034"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002145972","display_name":"Mai Luo","orcid":null},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mai Luo","raw_affiliation_strings":["School of Computer Science and Engineering, Sun Yat-sen University , Guangzhou 510000 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Sun Yat-sen University , Guangzhou 510000 , China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100613502","display_name":"Jianing Chen","orcid":"https://orcid.org/0000-0002-7525-1424"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianing Chen","raw_affiliation_strings":["School of Computer Science and Engineering, Sun Yat-sen University , Guangzhou 510000 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Sun Yat-sen University , Guangzhou 510000 , China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005203378","display_name":"Zixiang Pan","orcid":"https://orcid.org/0000-0001-5128-6051"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zixiang Pan","raw_affiliation_strings":["School of Computer Science and Engineering, Sun Yat-sen University , Guangzhou 510000 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Sun Yat-sen University , Guangzhou 510000 , China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101633465","display_name":"Yutong Lu","orcid":"https://orcid.org/0000-0001-5315-3375"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yutong Lu","raw_affiliation_strings":["School of Computer Science and Engineering, Sun Yat-sen University , Guangzhou 510000 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Sun Yat-sen University , Guangzhou 510000 , China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055989750","display_name":"Weijiang Yu","orcid":"https://orcid.org/0000-0002-7449-3093"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Weijiang Yu","raw_affiliation_strings":["School of Computer Science and Engineering, Sun Yat-sen University , Guangzhou 510000 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Sun Yat-sen University , Guangzhou 510000 , China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023539493","display_name":"Yuedong Yang","orcid":"https://orcid.org/0000-0002-6782-2813"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":true,"raw_author_name":"Yuedong Yang","raw_affiliation_strings":["Department of Computer Science, The University of Hong Kong , Hong Kong SAR , China","School of Computer Science and Engineering, Sun Yat-sen University , Guangzhou 510000 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, The University of Hong Kong , Hong Kong SAR , China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Sun Yat-sen University , Guangzhou 510000 , China","institution_ids":["https://openalex.org/I157773358"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5023539493","https://openalex.org/A5055989750"],"corresponding_institution_ids":["https://openalex.org/I157773358","https://openalex.org/I889458895"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":9.1582,"has_fulltext":true,"cited_by_count":63,"citation_normalized_percentile":{"value":0.98480418,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"24","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9194999933242798,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9021000266075134,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7107159495353699},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6726726293563843},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6193161606788635},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5932427048683167},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.5350561738014221},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5120242238044739},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.49428367614746094},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.4827505946159363},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.47185230255126953},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.46725863218307495},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3535413146018982},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.23971953988075256},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.23725220561027527},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18756794929504395},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08374235033988953}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7107159495353699},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6726726293563843},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6193161606788635},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5932427048683167},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.5350561738014221},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5120242238044739},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.49428367614746094},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.4827505946159363},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.47185230255126953},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.46725863218307495},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3535413146018982},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23971953988075256},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.23725220561027527},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18756794929504395},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08374235033988953},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbad048","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad048","pdf_url":"https://academic.oup.com/bib/article-pdf/24/2/bbad048/49560108/bbad048.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36781228","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36781228","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/429313","is_oa":true,"landing_page_url":"http://hdl.handle.net/10072/429313","pdf_url":null,"source":{"id":"https://openalex.org/S4306402548","display_name":"Griffith Research Online (Griffith University, Queensland, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11701301","host_organization_name":"Griffith University","host_organization_lineage":["https://openalex.org/I11701301"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbad048","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbad048","pdf_url":"https://academic.oup.com/bib/article-pdf/24/2/bbad048/49560108/bbad048.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.47999998927116394}],"awards":[{"id":"https://openalex.org/G3931435871","display_name":null,"funder_award_id":"2020YFB0204803","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5178878423","display_name":null,"funder_award_id":"2020YFB0204803","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6346021793","display_name":null,"funder_award_id":"2019B020228001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8092729911","display_name":null,"funder_award_id":"12126610","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8595978569","display_name":null,"funder_award_id":"62201150","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4320489547.pdf"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W1977556410","https://openalex.org/W2033403400","https://openalex.org/W2042789810","https://openalex.org/W2131681506","https://openalex.org/W2222512263","https://openalex.org/W2471536144","https://openalex.org/W2640408555","https://openalex.org/W2786672974","https://openalex.org/W2800392236","https://openalex.org/W2806524706","https://openalex.org/W2809368942","https://openalex.org/W2832881433","https://openalex.org/W2899224111","https://openalex.org/W2950372712","https://openalex.org/W3032266082","https://openalex.org/W3036371598","https://openalex.org/W3044030235","https://openalex.org/W3096655658","https://openalex.org/W3099768174","https://openalex.org/W3108118546","https://openalex.org/W3124439729","https://openalex.org/W3126958162","https://openalex.org/W3127011314","https://openalex.org/W3134482219","https://openalex.org/W3140605903","https://openalex.org/W3152852090","https://openalex.org/W3164692211","https://openalex.org/W3165120573","https://openalex.org/W3169098619","https://openalex.org/W3195383593","https://openalex.org/W3205213119","https://openalex.org/W3216067893","https://openalex.org/W4200191176","https://openalex.org/W4206826076","https://openalex.org/W4210583065","https://openalex.org/W4220765701","https://openalex.org/W4224009065","https://openalex.org/W4236965008","https://openalex.org/W4283274609","https://openalex.org/W4285803722","https://openalex.org/W4290154117","https://openalex.org/W4295717668","https://openalex.org/W4306406844","https://openalex.org/W4309258819","https://openalex.org/W6644682428","https://openalex.org/W6748816842","https://openalex.org/W6800634405","https://openalex.org/W6804194808","https://openalex.org/W6815484573"],"related_works":["https://openalex.org/W2399513595","https://openalex.org/W4388386498","https://openalex.org/W2028462563","https://openalex.org/W2982720988","https://openalex.org/W4388725868","https://openalex.org/W2104762330","https://openalex.org/W4379374180","https://openalex.org/W2523545060","https://openalex.org/W2381031055","https://openalex.org/W2366070815"],"abstract_inverted_index":{"Recent":[0],"advances":[1],"in":[2,42,49],"spatial":[3,18,30,43,65,77,107,151,158,170],"transcriptomics":[4,44,159],"have":[5,54,178],"enabled":[6],"measurements":[7],"of":[8,24,32,64,86],"gene":[9,50,88,111,132],"expression":[10,89,112,133],"at":[11],"cell/spot":[12],"resolution":[13],"meanwhile":[14],"retaining":[15],"both":[16,154],"the":[17,21,25,29,72,76,84,87,95,139,150,169,175],"information":[19],"and":[20,90,127,134,156,191],"histology":[22],"images":[23,60,115],"tissues.":[26],"Accurately":[27],"identifying":[28],"domains":[31,108,152],"spots":[33],"is":[34],"a":[35,100],"vital":[36],"step":[37],"for":[38,61,75,79,168,183],"various":[39,184],"downstream":[40,185],"tasks":[41],"analysis.":[45],"To":[46],"remove":[47],"noises":[48],"expression,":[51],"several":[52],"methods":[53,69,167],"been":[55,180],"developed":[56],"to":[57,104,137,148,164],"combine":[58],"histopathological":[59,114],"data":[62],"analysis":[63],"transcriptomics.":[66],"However,":[67],"these":[68],"either":[70],"use":[71],"image":[73,91,135],"only":[74],"relations":[78],"spots,":[80],"or":[81],"individually":[82],"learn":[83,138],"embeddings":[85],"without":[92],"fully":[93],"coupling":[94],"information.":[96],"Here,":[97],"we":[98,120],"propose":[99],"novel":[101],"method":[102],"ConGI":[103,161],"accurately":[105],"exploit":[106],"by":[109],"adapting":[110],"with":[113],"through":[116],"contrastive":[117,123],"learning.":[118],"Specifically,":[119],"designed":[121],"three":[122],"loss":[124],"functions":[125],"within":[126],"between":[128],"two":[129],"modalities":[130],"(the":[131],"data)":[136],"common":[140],"representations.":[141],"The":[142],"learned":[143,176],"representations":[144,177],"are":[145],"then":[146],"used":[147],"cluster":[149],"on":[153],"tumor":[155],"normal":[157],"datasets.":[160],"was":[162],"shown":[163,181],"outperform":[165],"existing":[166],"domain":[171],"identification.":[172],"In":[173],"addition,":[174],"also":[179],"powerful":[182],"tasks,":[186],"including":[187],"trajectory":[188],"inference,":[189],"clustering,":[190],"visualization.":[192]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":27},{"year":2024,"cited_by_count":23},{"year":2023,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
