{"id":"https://openalex.org/W4317703003","doi":"https://doi.org/10.1093/bib/bbac628","title":"Enhanced compound-protein binding affinity prediction by representing protein multimodal information via a coevolutionary strategy","display_name":"Enhanced compound-protein binding affinity prediction by representing protein multimodal information via a coevolutionary strategy","publication_year":2022,"publication_date":"2022-12-26","ids":{"openalex":"https://openalex.org/W4317703003","doi":"https://doi.org/10.1093/bib/bbac628","pmid":"https://pubmed.ncbi.nlm.nih.gov/36682005"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac628","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac628","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010320694","display_name":"Binjie Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I4210166576","display_name":"First Affiliated Hospital Zhejiang University","ror":"https://ror.org/05m1p5x56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210166576"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Binjie Guo","raw_affiliation_strings":["Department of Neurobiology and Department of Rehabilitation Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","Liangzhu Laboratory , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University , Hangzhou 310058 , China","Zhejiang University , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","Zhejiang University School of Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, Zhejiang University, 1369 West Wenyi Road, Hangzhou 311121, China","Department of Neurobiology and Department of Rehabilitation Medicine, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang Province 310058, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurobiology and Department of Rehabilitation Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","institution_ids":["https://openalex.org/I4210166576"]},{"raw_affiliation_string":"Liangzhu Laboratory , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","institution_ids":[]},{"raw_affiliation_string":"NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University , Hangzhou 310058 , China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang University , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang University School of Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","institution_ids":["https://openalex.org/I4210166576"]},{"raw_affiliation_string":"Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, Zhejiang University, 1369 West Wenyi Road, Hangzhou 311121, China","institution_ids":["https://openalex.org/I4210123185","https://openalex.org/I76130692"]},{"raw_affiliation_string":"Department of Neurobiology and Department of Rehabilitation Medicine, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang Province 310058, China","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I4210166576"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007715764","display_name":"Hanyu Zheng","orcid":"https://orcid.org/0000-0003-1922-8112"},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I4210166576","display_name":"First Affiliated Hospital Zhejiang University","ror":"https://ror.org/05m1p5x56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210166576"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hanyu Zheng","raw_affiliation_strings":["Department of Neurobiology and Department of Rehabilitation Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","Liangzhu Laboratory , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University , Hangzhou 310058 , China","Zhejiang University , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","Zhejiang University School of Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, Zhejiang University, 1369 West Wenyi Road, Hangzhou 311121, China","Department of Neurobiology and Department of Rehabilitation Medicine, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang Province 310058, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurobiology and Department of Rehabilitation Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","institution_ids":["https://openalex.org/I4210166576"]},{"raw_affiliation_string":"Liangzhu Laboratory , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","institution_ids":[]},{"raw_affiliation_string":"NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University , Hangzhou 310058 , China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang University , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang University School of Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","institution_ids":["https://openalex.org/I4210166576"]},{"raw_affiliation_string":"Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, Zhejiang University, 1369 West Wenyi Road, Hangzhou 311121, China","institution_ids":["https://openalex.org/I4210123185","https://openalex.org/I76130692"]},{"raw_affiliation_string":"Department of Neurobiology and Department of Rehabilitation Medicine, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang Province 310058, China","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I4210166576"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019078756","display_name":"Haohan Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I4210166576","display_name":"First Affiliated Hospital Zhejiang University","ror":"https://ror.org/05m1p5x56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210166576"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haohan Jiang","raw_affiliation_strings":["Department of Neurobiology and Department of Rehabilitation Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","Liangzhu Laboratory , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University , Hangzhou 310058 , China","Zhejiang University , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","Zhejiang University School of Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","Department of Neurobiology and Department of Rehabilitation Medicine, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang Province 310058, China","Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, Zhejiang University, 1369 West Wenyi Road, Hangzhou 311121, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurobiology and Department of Rehabilitation Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","institution_ids":["https://openalex.org/I4210166576"]},{"raw_affiliation_string":"Liangzhu Laboratory , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","institution_ids":[]},{"raw_affiliation_string":"NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University , Hangzhou 310058 , China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang University , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang University School of Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","institution_ids":["https://openalex.org/I4210166576"]},{"raw_affiliation_string":"Department of Neurobiology and Department of Rehabilitation Medicine, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang Province 310058, China","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I4210166576"]},{"raw_affiliation_string":"Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, Zhejiang University, 1369 West Wenyi Road, Hangzhou 311121, China","institution_ids":["https://openalex.org/I4210123185","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100433314","display_name":"Xiaodan Li","orcid":"https://orcid.org/0000-0002-5025-4805"},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I4210166576","display_name":"First Affiliated Hospital Zhejiang University","ror":"https://ror.org/05m1p5x56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210166576"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaodan Li","raw_affiliation_strings":["Department of Neurobiology and Department of Rehabilitation Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","Liangzhu Laboratory , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University , Hangzhou 310058 , China","Zhejiang University , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","Zhejiang University School of Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, Zhejiang University, 1369 West Wenyi Road, Hangzhou 311121, China","Department of Neurobiology and Department of Rehabilitation Medicine, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang Province 310058, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurobiology and Department of Rehabilitation Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","institution_ids":["https://openalex.org/I4210166576"]},{"raw_affiliation_string":"Liangzhu Laboratory , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","institution_ids":[]},{"raw_affiliation_string":"NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University , Hangzhou 310058 , China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang University , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang University School of Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","institution_ids":["https://openalex.org/I4210166576"]},{"raw_affiliation_string":"Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, Zhejiang University, 1369 West Wenyi Road, Hangzhou 311121, China","institution_ids":["https://openalex.org/I4210123185","https://openalex.org/I76130692"]},{"raw_affiliation_string":"Department of Neurobiology and Department of Rehabilitation Medicine, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang Province 310058, China","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I4210166576"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087950064","display_name":"Naiyu Guan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I4210166576","display_name":"First Affiliated Hospital Zhejiang University","ror":"https://ror.org/05m1p5x56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210166576"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Naiyu Guan","raw_affiliation_strings":["Department of Neurobiology and Department of Rehabilitation Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","Liangzhu Laboratory , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University , Hangzhou 310058 , China","Zhejiang University , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","Zhejiang University School of Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, Zhejiang University, 1369 West Wenyi Road, Hangzhou 311121, China","Department of Neurobiology and Department of Rehabilitation Medicine, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang Province 310058, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurobiology and Department of Rehabilitation Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","institution_ids":["https://openalex.org/I4210166576"]},{"raw_affiliation_string":"Liangzhu Laboratory , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","institution_ids":[]},{"raw_affiliation_string":"NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University , Hangzhou 310058 , China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang University , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang University School of Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","institution_ids":["https://openalex.org/I4210166576"]},{"raw_affiliation_string":"Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, Zhejiang University, 1369 West Wenyi Road, Hangzhou 311121, China","institution_ids":["https://openalex.org/I4210123185","https://openalex.org/I76130692"]},{"raw_affiliation_string":"Department of Neurobiology and Department of Rehabilitation Medicine, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang Province 310058, China","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I4210166576"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046116486","display_name":"Yanming Zuo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanming Zuo","raw_affiliation_strings":["Liangzhu Laboratory , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University , Hangzhou 310058 , China","Zhejiang University , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, Zhejiang University, 1369 West Wenyi Road, Hangzhou 311121, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Liangzhu Laboratory , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","institution_ids":[]},{"raw_affiliation_string":"NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University , Hangzhou 310058 , China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang University , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, Zhejiang University, 1369 West Wenyi Road, Hangzhou 311121, China","institution_ids":["https://openalex.org/I4210123185","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019762150","display_name":"Yicheng Zhang","orcid":"https://orcid.org/0000-0001-5979-793X"},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I4210166576","display_name":"First Affiliated Hospital Zhejiang University","ror":"https://ror.org/05m1p5x56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210166576"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yicheng Zhang","raw_affiliation_strings":["Department of Neurobiology and Department of Rehabilitation Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","Liangzhu Laboratory , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University , Hangzhou 310058 , China","Zhejiang University , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","Zhejiang University School of Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, Zhejiang University, 1369 West Wenyi Road, Hangzhou 311121, China","Department of Neurobiology and Department of Rehabilitation Medicine, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang Province 310058, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurobiology and Department of Rehabilitation Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","institution_ids":["https://openalex.org/I4210166576"]},{"raw_affiliation_string":"Liangzhu Laboratory , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","institution_ids":[]},{"raw_affiliation_string":"NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University , Hangzhou 310058 , China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang University , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang University School of Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","institution_ids":["https://openalex.org/I4210166576"]},{"raw_affiliation_string":"Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, Zhejiang University, 1369 West Wenyi Road, Hangzhou 311121, China","institution_ids":["https://openalex.org/I4210123185","https://openalex.org/I76130692"]},{"raw_affiliation_string":"Department of Neurobiology and Department of Rehabilitation Medicine, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang Province 310058, China","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I4210166576"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102736447","display_name":"Hengfu Yang","orcid":"https://orcid.org/0000-0002-8006-9715"},"institutions":[{"id":"https://openalex.org/I916048824","display_name":"Hunan First Normal University","ror":"https://ror.org/00s9d1a36","country_code":"CN","type":"education","lineage":["https://openalex.org/I916048824"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hengfu Yang","raw_affiliation_strings":["School of Computer Science, Hunan First Normal University , Changsha, 410205 Hunan , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Hunan First Normal University , Changsha, 410205 Hunan , China","institution_ids":["https://openalex.org/I916048824"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075325267","display_name":"Xuhua Wang","orcid":"https://orcid.org/0000-0002-4565-787X"},"institutions":[{"id":"https://openalex.org/I199305430","display_name":"Nantong University","ror":"https://ror.org/02afcvw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I199305430"]},{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I4210166576","display_name":"First Affiliated Hospital Zhejiang University","ror":"https://ror.org/05m1p5x56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210166576"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xuhua Wang","raw_affiliation_strings":["Co-innovation Center of Neuroregeneration, Nantong University , Nantong, 226001 Jiangsu , China","Department of Neurobiology and Department of Rehabilitation Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","Liangzhu Laboratory , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University , Hangzhou 310058 , China","Zhejiang University , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","Zhejiang University School of Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, Zhejiang University, 1369 West Wenyi Road, Hangzhou 311121, China","Department of Neurobiology and Department of Rehabilitation Medicine, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang Province 310058, China"],"raw_orcid":"https://orcid.org/0000-0002-4565-787X","affiliations":[{"raw_affiliation_string":"Co-innovation Center of Neuroregeneration, Nantong University , Nantong, 226001 Jiangsu , China","institution_ids":["https://openalex.org/I199305430"]},{"raw_affiliation_string":"Department of Neurobiology and Department of Rehabilitation Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","institution_ids":["https://openalex.org/I4210166576"]},{"raw_affiliation_string":"Liangzhu Laboratory , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","institution_ids":[]},{"raw_affiliation_string":"NHC and CAMS Key Laboratory of Medical Neurobiology, Zhejiang University , Hangzhou 310058 , China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang University , MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, , 1369 West Wenyi Road, Hangzhou 311121 , China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang University School of Medicine , First Affiliated Hospital, , Hangzhou, Zhejiang Province 310058 , China","institution_ids":["https://openalex.org/I4210166576"]},{"raw_affiliation_string":"Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-machine Integration, State Key Laboratory of Brain-machine Intelligence, Zhejiang University, 1369 West Wenyi Road, Hangzhou 311121, China","institution_ids":["https://openalex.org/I4210123185","https://openalex.org/I76130692"]},{"raw_affiliation_string":"Department of Neurobiology and Department of Rehabilitation Medicine, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang Province 310058, China","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I4210166576"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5075325267"],"corresponding_institution_ids":["https://openalex.org/I199305430","https://openalex.org/I4210123185","https://openalex.org/I4210166576","https://openalex.org/I76130692"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.5036,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.61588038,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"24","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5594101548194885},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.46894073486328125},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4222782552242279},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1577613353729248}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5594101548194885},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.46894073486328125},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4222782552242279},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1577613353729248}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac628","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac628","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36682005","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36682005","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1166363120","display_name":null,"funder_award_id":"LR20H090002","funder_id":"https://openalex.org/F4320338464","funder_display_name":"Natural Science Foundation of Zhejiang Province"},{"id":"https://openalex.org/G2202637478","display_name":null,"funder_award_id":"K20210195","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G2962354298","display_name":null,"funder_award_id":"81971866","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null},{"id":"https://openalex.org/F4320338464","display_name":"Natural Science Foundation of Zhejiang Province","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":77,"referenced_works":["https://openalex.org/W19471559","https://openalex.org/W1688073391","https://openalex.org/W1969231606","https://openalex.org/W1986240377","https://openalex.org/W1993046136","https://openalex.org/W2015604457","https://openalex.org/W2070643112","https://openalex.org/W2093345318","https://openalex.org/W2098432123","https://openalex.org/W2101569554","https://openalex.org/W2114162221","https://openalex.org/W2125539642","https://openalex.org/W2139736926","https://openalex.org/W2146465875","https://openalex.org/W2148512505","https://openalex.org/W2153838454","https://openalex.org/W2194775991","https://openalex.org/W2204695023","https://openalex.org/W2259538443","https://openalex.org/W2297764176","https://openalex.org/W2529607894","https://openalex.org/W2583907533","https://openalex.org/W2785947426","https://openalex.org/W2800315269","https://openalex.org/W2806547269","https://openalex.org/W2844076759","https://openalex.org/W2897803911","https://openalex.org/W2899769766","https://openalex.org/W2899788782","https://openalex.org/W2922152201","https://openalex.org/W2944973540","https://openalex.org/W2945811181","https://openalex.org/W2964015378","https://openalex.org/W2990256362","https://openalex.org/W2999554466","https://openalex.org/W3005769002","https://openalex.org/W3017149343","https://openalex.org/W3019745511","https://openalex.org/W3025511956","https://openalex.org/W3027236388","https://openalex.org/W3034492151","https://openalex.org/W3038797371","https://openalex.org/W3046010945","https://openalex.org/W3048079539","https://openalex.org/W3089488726","https://openalex.org/W3090894484","https://openalex.org/W3095368098","https://openalex.org/W3096561213","https://openalex.org/W3098935468","https://openalex.org/W3102188026","https://openalex.org/W3119193565","https://openalex.org/W3119225668","https://openalex.org/W3135420706","https://openalex.org/W3135935512","https://openalex.org/W3139690347","https://openalex.org/W3152632743","https://openalex.org/W3176010026","https://openalex.org/W3177684048","https://openalex.org/W3177828909","https://openalex.org/W3177976091","https://openalex.org/W3185341429","https://openalex.org/W3213488059","https://openalex.org/W4200139236","https://openalex.org/W4205171481","https://openalex.org/W4210683988","https://openalex.org/W4210727434","https://openalex.org/W4213077304","https://openalex.org/W4221066482","https://openalex.org/W4223602425","https://openalex.org/W4250664506","https://openalex.org/W4297801719","https://openalex.org/W6600778564","https://openalex.org/W6687483927","https://openalex.org/W6726873649","https://openalex.org/W6762896663","https://openalex.org/W6779961489","https://openalex.org/W6788598020"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Due":[0],"to":[1,7,52,91],"the":[2,10,55,65,73,93,108,117,127,137],"lack":[3],"of":[4,13,60,75,98,139,164],"a":[5,14,41,49,80,122,167],"method":[6,82,149],"efficiently":[8,160],"represent":[9,54],"multimodal":[11,162],"information":[12,163],"protein,":[15],"including":[16],"its":[17],"structure":[18,56,115],"and":[19,57,62,88,95,114,155],"sequence":[20,58,113],"information,":[21],"predicting":[22,69],"compound-protein":[23],"binding":[24],"affinity":[25],"(CPA)":[26],"still":[27],"suffers":[28],"from":[29,72],"low":[30],"accuracy":[31,94,154],"when":[32],"applying":[33],"machine-learning":[34],"methods.":[35],"To":[36],"overcome":[37],"this":[38,140],"limitation,":[39],"in":[40,100,116,131],"novel":[42],"end-to-end":[43],"architecture":[44],"(named":[45],"FeatNN),":[46],"we":[47,78,105],"develop":[48],"coevolutionary":[50,168],"strategy":[51],"jointly":[53],"features":[59],"proteins":[61,165],"ultimately":[63],"optimize":[64,92],"mathematical":[66],"models":[67],"for":[68,142,150],"CPA.":[70],"Furthermore,":[71],"perspective":[74],"data-driven":[76],"approach,":[77],"proposed":[79],"rational":[81],"that":[83],"can":[84],"utilize":[85],"both":[86],"high-":[87],"low-quality":[89],"databases":[90],"generalization":[96,157],"ability":[97,158],"FeatNN":[99,124,145],"CPA":[101,152],"prediction":[102,153],"tasks.":[103],"Notably,":[104],"visually":[106],"interpret":[107],"feature":[109],"interaction":[110],"process":[111],"between":[112],"rationally":[118],"designed":[119],"architecture.":[120],"As":[121],"result,":[123],"considerably":[125],"outperforms":[126],"state-of-the-art":[128],"(SOTA)":[129],"baseline":[130],"virtual":[132],"drug":[133],"evaluation":[134],"tasks,":[135],"indicating":[136],"feasibility":[138],"approach":[141],"practical":[143],"use.":[144],"provides":[146],"an":[147],"outstanding":[148],"higher":[151],"better":[156],"by":[159],"representing":[161],"via":[166],"strategy.":[169]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
