{"id":"https://openalex.org/W4316339998","doi":"https://doi.org/10.1093/bib/bbac615","title":"Computational model for disease research","display_name":"Computational model for disease research","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4316339998","doi":"https://doi.org/10.1093/bib/bbac615","pmid":"https://pubmed.ncbi.nlm.nih.gov/36642407"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac615","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac615","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac615/48781857/bbac615.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac615/48781857/bbac615.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100371773","display_name":"Xing Chen","orcid":"https://orcid.org/0000-0001-9297-7174"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xing Chen","raw_affiliation_strings":["Artificial Intelligence Research Institute, China University of Mining and Technology , Xuzhou 221116 , China","School of Information and Control Engineering, China University of Mining and Technology , Xuzhou 221116 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Research Institute, China University of Mining and Technology , Xuzhou 221116 , China","institution_ids":["https://openalex.org/I25757504"]},{"raw_affiliation_string":"School of Information and Control Engineering, China University of Mining and Technology , Xuzhou 221116 , China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100744865","display_name":"Huang Li","orcid":"https://orcid.org/0000-0003-4669-3466"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Huang","raw_affiliation_strings":["The Future Laboratory, Tsinghua University , Beijing 100084 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Future Laboratory, Tsinghua University , Beijing 100084 , China","institution_ids":["https://openalex.org/I99065089"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100371773"],"corresponding_institution_ids":["https://openalex.org/I25757504"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.0182,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.86196278,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"24","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6357062458992004},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.6260308027267456},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.5123575925827026},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.48967245221138},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4718713164329529},{"id":"https://openalex.org/keywords/variable","display_name":"Variable (mathematics)","score":0.46454358100891113},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4280202388763428},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3728035092353821},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.31815674901008606},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2326129972934723},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.15900787711143494},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11660397052764893},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11505603790283203}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6357062458992004},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.6260308027267456},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.5123575925827026},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.48967245221138},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4718713164329529},{"id":"https://openalex.org/C182365436","wikidata":"https://www.wikidata.org/wiki/Q50701","display_name":"Variable (mathematics)","level":2,"score":0.46454358100891113},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4280202388763428},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3728035092353821},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.31815674901008606},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2326129972934723},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.15900787711143494},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11660397052764893},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11505603790283203},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac615","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac615","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac615/48781857/bbac615.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36642407","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36642407","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbac615","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac615","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac615/48781857/bbac615.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.5,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G3220252743","display_name":"\u57fa\u4e8e\u56fe\u4e0e\u7ec4\u5408\u4f18\u5316\u7684\u751f\u7269\u6570\u636e\u548c\u7f51\u7edc\u6570\u636e\u6316\u6398\u7b97\u6cd5\u7814\u7a76","funder_award_id":"11931008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G579333840","display_name":"\u57fa\u4e8e\u591a\u6e90\u6570\u636e\u878d\u5408\u7684\u836f\u7269\u54cd\u5e94\u548c\u836f\u7269\u76f8\u5173\u975e\u7f16\u7801RNA\u9776\u70b9\u9884\u6d4b\u7814\u7a76","funder_award_id":"61972399","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4316339998.pdf","grobid_xml":"https://content.openalex.org/works/W4316339998.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1577822803","https://openalex.org/W2023116290","https://openalex.org/W2052688256","https://openalex.org/W2059313072","https://openalex.org/W2074490119","https://openalex.org/W2090247362","https://openalex.org/W2170892256","https://openalex.org/W2935703330","https://openalex.org/W2972438906","https://openalex.org/W3015444032","https://openalex.org/W3138461147","https://openalex.org/W3159800610","https://openalex.org/W3172351936","https://openalex.org/W3185560091","https://openalex.org/W4225964782","https://openalex.org/W4226390629","https://openalex.org/W4281390506","https://openalex.org/W4282590144","https://openalex.org/W4283581736","https://openalex.org/W4283592141","https://openalex.org/W4283742024","https://openalex.org/W4285803635","https://openalex.org/W4291019765","https://openalex.org/W4292438737","https://openalex.org/W4294636450","https://openalex.org/W4295242189","https://openalex.org/W4306918625","https://openalex.org/W6811068709","https://openalex.org/W6842529296"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4224009465","https://openalex.org/W2389073067","https://openalex.org/W4286629047","https://openalex.org/W4306321456","https://openalex.org/W4285260836","https://openalex.org/W3046775127","https://openalex.org/W2275988210","https://openalex.org/W2312170576"],"abstract_inverted_index":{"Computational":[0],"analysis":[1],"of":[2,27,56,107,124,135,157,162],"vast":[3],"public":[4],"and":[5,22,51,92,145,148,159,174],"private":[6],"omics":[7],"data":[8,102],"[1\u20135]":[9],"generated":[10],"by":[11,87,141],"high-throughput":[12],"technologies":[13],"[6,":[14],"7]":[15],"aids":[16],"in":[17],"deciphering":[18],"complex":[19],"mechanisms":[20,75],"[8\u201311]":[21],"relevant":[23],"gene":[24,78],"functions":[25],"[12\u201315]":[26],"various":[28],"diseases":[29],"ranging":[30],"from":[31,76],"viral":[32,61],"infections":[33],"to":[34,59,65,71,103,152,170],"cancers.":[35],"Focusing":[36],"on":[37,97],"computational":[38],"model":[39],"for":[40,118],"disease":[41,73],"research,":[42],"this":[43],"special":[44],"issue":[45],"include":[46],"the":[47,93],"following":[48],"nine":[49],"research":[50],"three":[52,55],"review":[53],"articles:":[54],"them":[57],"related":[58],"understanding":[60],"infections,":[62],"two":[63,81],"aimed":[64],"benefit":[66],"cancer":[67],"diagnosis,":[68],"four":[69],"seeking":[70],"uncover":[72],"development":[74],"bulk":[77,99],"expression":[79,90],"data,":[80,91],"with":[82],"a":[83,114],"similar":[84],"objective":[85],"achieved":[86],"modelling":[88],"single-cell":[89,101],"remaining":[94],"one":[95],"based":[96],"either":[98],"or":[100],"identify":[104],"critical":[105],"states":[106],"diseases.":[108],"Yin":[109],"et":[110],"al.":[111],"[16]":[112],"developed":[113],"machine":[115],"learning":[116,176],"framework":[117,167],"predicting":[119],"variable-length":[120,137],"linear":[121],"B-cell":[122],"epitopes":[123],"human-adapted":[125],"viruses,":[126],"which":[127],"could":[128],"potentially":[129],"accelerate":[130],"vaccine":[131],"design.":[132],"The":[133,165],"capability":[134],"handling":[136],"sequences":[138],"was":[139,168],"enabled":[140],"deploying":[142],"QR":[143],"decomposition":[144],"composition,":[146],"transition,":[147],"distribution":[149],"(CTD)":[150],"descriptors":[151],"respectively":[153],"encode":[154],"Protvec":[155],"representation":[156],"peptides":[158],"physicochemical":[160],"properties":[161],"amino":[163],"acids.":[164],"proposed":[166],"applicable":[169],"both":[171],"traditional":[172],"classifiers":[173],"deep":[175],"models.":[177]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":5}],"updated_date":"2026-03-06T06:45:51.903784","created_date":"2025-10-10T00:00:00"}
